BAC Information

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BAC

Clone NameB6Ng01-113K08
Chromosome6 (Build37)
Map Location 82,784,776 - 82,785,555
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC232143, 1700009C05Rik, AW146020, Mrpl19, Tmem166, EG622198, Tacr1, Pole4, LOC100043412, Hk2
Downstream geneEG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113K08.bB6Ng01-113K08.g
ACCDH919386DH919387
length1,147782
definitionDH919386|Mus musculus domesticus DNA, BAC clone: B6Ng01-113K08, 5' end.DH919387|Mus musculus domesticus DNA, BAC clone: B6Ng01-113K08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttccttccttcctttctttcttcctttttctttctttctttctt
ctctctctctctctctctctctctctctttctttctttcttttttttttt
ttgagacagggcttctctgcgtagctctggctatcctggaactcactttg
tagaccaagatggcctcaaactcagatatctgcctgcttctgcctcctga
gtgctgggattaaaggtgtgcaccactaccacctggctatagatacacat
ttctaaccgatattattgtccttcttctcacccttctcaagtatgatttc
atacaaattgtagcttgatgaattatttcctcttaatactagatatttca
ttttatcatctttttattttgaatgattttgaagaagctgaatctaaccc
ttgctcctccctttcattcctgttagtcctcttcatttcatgagtcagtt
ttgttcttactttattactttatgtcatgtatgcatatgattttatatat
ctgtataaagtccaagacccacaaatgagaaaatgtgacttttgtccttc
tggatctgacttaattcacttagataatcttgtgatgcattcattttcct
aaaaatgatgcaataagaggttatcttgtctatggttgaacaaagttcca
ctgtgaacatatatcaccttgtcatgcatccttctgttgagagacatcta
gactgactccataatttagctactgtggataatgatgcaataagagttgg
tgtggaccatctccgtggtctgttgcttatttggatgctccttgacttca
cttagaagtatatttaggagcttctttcatttattacacattcctctgat
ttattcttttaacttttttttgtgtgtgcgatttcctctaatctctttca
ctgaatccctcactggagaactggcatttccagaggagtcccattgcctg
atttctttcatgtctcttgtttcttcattgtacttgtgcatttagggtac
ccattgtttggatttaaaagtcagcttgcattttccagttgaggtgttgg
agttgaattgtcctattcctctcacgtgtgaggggtgtgttcagtactga
atcccatatccttggtgccagtgtgttggggcacctcccctaccacc
gaattccacagttttaacaaacaaaaagtgagcaccaagtaggtatattt
aaatttttattacattgttctttcgtttgtgtgtggggtgtgcacgtgtg
ctgtagcccaagtatggaagtcagaggacagctccggggagtcagttctc
gatttccatggtgtggggcctggggacttggatcatcaggaggcttagtg
tcaagtatcttcaccttcaaaccatcttgcaggctgaagaagtttattcc
atcgttcttcctagctaagagcccactccttgcaggaaagaataaccttg
cccctatgagcatttatacgtgaggtcgtggaggggcctagccctcactt
aggaatgaagtcctaagcttcaggagaacccgtggggttggggtggctgt
ggggaaggacgttcaaggatgatgaggaggaggaaatgacttcctgtgat
gatttcctttgttcatttttcatttggaaatcctgtgtgtgcagccttat
ttccatgtgtgtgtgtggggaacaatgtgtgcctaggtccagaagaactg
acgcaggttctgcaatggtatgatcaatgagccccatcaaccgcaacaca
gaaccctgccaggcaatgctgacatcaaaggcattcccagctcaagtgac
tgatgtggtggctgggtctctcctctttcaacggtccacatgtatttcat
gggttgtcaatgattattcaggcttcctatgagcctgcagcagtgcccac
ctctgggggagtcttggaaaaaaggaaaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_82784776_82785555
seq2: B6Ng01-113K08.g_69_850

seq1  GAATTCCACAGTTTTAACAAACAAAAAGTGAGCACCAAGTAGGTATATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGTTTTAACAAACAAAAAGTGAGCACCAAGTAGGTATATTT  50

seq1  AAATTTTTATTACATTGTTCTTTCGTTTGTGTGTGGGGTGTGCACGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTATTACATTGTTCTTTCGTTTGTGTGTGGGGTGTGCACGTGTG  100

seq1  CTGTAGCCCAAGTATGGAAGTCAGAGGACAGCTCCGGGGAGTCAGTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCCCAAGTATGGAAGTCAGAGGACAGCTCCGGGGAGTCAGTTCTC  150

seq1  GATTTCCATGGTGTGGGGCCTGGGGACTTGGATCATCAGGAGGCTTAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCATGGTGTGGGGCCTGGGGACTTGGATCATCAGGAGGCTTAGTG  200

seq1  TCAAGTATCTTCACCTTCAAACCATCTTGCAGGCTGAAGAAGTTTATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTATCTTCACCTTCAAACCATCTTGCAGGCTGAAGAAGTTTATTCC  250

seq1  ATCGTTCTTCCTAGCTAAGAGCCCACTCCTTGCAGGAAAGAATAACCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTTCTTCCTAGCTAAGAGCCCACTCCTTGCAGGAAAGAATAACCTTG  300

seq1  CCCCTATGAGCATTTATACGTGAGGTCGTGGAGGGGCCTAGCCCTCACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTATGAGCATTTATACGTGAGGTCGTGGAGGGGCCTAGCCCTCACTT  350

seq1  AGGAATGAAGTCCTAAGCTTCAGGAGAACCCGTGGGGTTGGGGTGGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGAAGTCCTAAGCTTCAGGAGAACCCGTGGGGTTGGGGTGGCTGT  400

seq1  GGGGAAGGACGTTCAAGGATGATGAGGAGGAGGAAATGACTTCCTGTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGGACGTTCAAGGATGATGAGGAGGAGGAAATGACTTCCTGTGAT  450

seq1  GATTTCCTTTGTTCATTTTTCATTTGGAAATCCTGTGTGTGCAGCCTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCTTTGTTCATTTTTCATTTGGAAATCCTGTGTGTGCAGCCTTAT  500

seq1  TTCCATGTGTGTGTGTGGGGAACAATGTGTGCCTAGGTCCAGAAGAACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGTGTGTGTGTGGGGAACAATGTGTGCCTAGGTCCAGAAGAACTG  550

seq1  ACGCAGGTTCTGCAATGGTATGATCAATGAGCCCCATCAACCGCAACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAGGTTCTGCAATGGTATGATCAATGAGCCCCATCAACCGCAACACA  600

seq1  GAACCCTGCCAGGCAATGCTGACATCAAAGGCATTCCCAGCTCAAGTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCTGCCAGGCAATGCTGACATCAAAGGCATTCCCAGCTCAAGTGAC  650

seq1  TGATGTGGTGGCTGGGTCTCTCCTCTTTCAACGGTCCACATGTA-TTCAT  699
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGATGTGGTGGCTGGGTCTCTCCTCTTTCAACGGTCCACATGTATTTCAT  700

seq1  GGTTTGTCAATGATTTATTCAGGCTTCCTATGAGCCTGCAGCAGTG-CCA  748
      || |||||||||| |||||||||||||||||||||||||||||||| |||
seq2  GGGTTGTCAATGA-TTATTCAGGCTTCCTATGAGCCTGCAGCAGTGCCCA  749

seq1  CCTCT-GGGGAGTCTTGGAAAAAAGGAAAATAA  780
      ||||| |||||||||||||||||||||||||||
seq2  CCTCTGGGGGAGTCTTGGAAAAAAGGAAAATAA  782