BAC Information

Click to search

BAC

Clone NameB6Ng01-113L13
Chromosome6 (Build37)
Map Location 113,704,971 - 113,874,723
singlet/doubletdoublet
Overlap geneAtp2b2
Upstream geneSrgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13
Downstream geneSlc6a11, LOC666491, Slc6a1, Hrh1, Atg7, Vgll4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113L13.bB6Ng01-113L13.g
ACCDH919442DH919443
length6341,067
definitionDH919442|Mus musculus domesticus DNA, BAC clone: B6Ng01-113L13, 5' end.DH919443|Mus musculus domesticus DNA, BAC clone: B6Ng01-113L13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,704,971 - 113,705,604)(113,873,664 - 113,874,723)
sequence
gaattctgcttataattctagtgacccactgctggttataattcctgacc
cccagctagccccacgactgcttgagaactcttggtcaatgacactgtct
tcagtggccctttattcagcccgtgggcctcacagagacccctgtcccac
catgttctctggaccccggcccctgcccgcctgcccgcccaggagctggc
gttggtagtgccagcggaggcggtaaggagtcacactcacgcccagctgc
agcaggaggaaggctggtcggagaggaaagagcattggataacgacacgc
gactaggactagagagactggctacgtcctggctctggctggtgacggag
gactgtctccgcagggccccctggaaggaggccccgctcttgaaagtatt
gactacttcaatctgcaacggaggagagaacgagacaagttgcgagaaga
aacgaacaccacagctacacaactgacgggcgcaacatcacaaacagccg
cagccacggcgacaaggacaacaccacttaaaacaaaaataccagacaca
ctccaaggttcggaaagatgtctgctcagctctgggcccacctgtaggcc
ccggggatcccaagcggggggtggggggtaggga
gaattcaccaccaagtcttcaacttcataggttgactccagctaccaagc
atcctgtcaacaactctgaatgggaaaacaccccagaggccccagtttcc
cttgtcacctgactgaaaggaaggtctctcctgagacagatgagaagtcg
ggagacattgacaatagcagtcattgacaaaagcaggcattcctggaaga
tgagctgaagtatgctagcacatgcctgtgatctcagctttgggaggctg
aggcagatgggctgccatgagttcaaggccagcctctgctacatagaaag
ttctagaccaacccaggctaaagggaaaaacacaaatggaacatgaagag
aattctagaaaactttaggcagagggaaacacacatttagtggcttctat
ttccaggctggagtggagtcactagccagaatctcctctgtaaggacagc
tgaaagcccccgacacactcagaacaactagaagacagacacatgaaggg
ggaacacagctggcccggggtgggaagaggccccaggatcccacagtgga
aactctgggtctttccatgacaaaatttatcccagaatcaaactgaagaa
actaggactgaggccttgacaatagtcatacccagcagtccccaccctag
agcagccttcttcaatctgtgggctgtgaccctttttgggagtcaaatga
ctttcacagggggtcactttagactatcggaaaacacagatttcacatta
tgattcataagtgcaaaattacagttatgaaatagcaacaaaaaatcatt
ttatggttgggggtcaccacattatgaagaactgtaaagggtcacagcgt
ttaggaaggttgaagagccactgccgtggccaaatgcaagggtcaaacgc
aatactcagatgctggcggactgttcaagcatttccccatgaaatcttgt
aatgggagttgggacctccacctctacatgtttatatgccgaaaggccat
gggaggttgtaaggacccatgacccttccacctgaagggattcctatccc
ttctctagcaacaacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_113704971_113705604
seq2: B6Ng01-113L13.b_48_681

seq1  GAATTCTGCTTATAATTCTAGTGACCCACTGCTGGTTATAATTCCTGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTTATAATTCTAGTGACCCACTGCTGGTTATAATTCCTGACC  50

seq1  CCCAGCTAGCCCCACGACTGCTTGAGAACTCTTGGTCAATGACACTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTAGCCCCACGACTGCTTGAGAACTCTTGGTCAATGACACTGTCT  100

seq1  TCAGTGGCCCTTTATTCAGCCCGTGGGCCTCACAGAGACCCCTGTCCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGCCCTTTATTCAGCCCGTGGGCCTCACAGAGACCCCTGTCCCAC  150

seq1  CATGTTCTCTGGACCCCGGCCCCTGCCCGCCTGCCCGCCCAGGAGCTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCTCTGGACCCCGGCCCCTGCCCGCCTGCCCGCCCAGGAGCTGGC  200

seq1  GTTGGTAGTGCCAGCGGAGGCGGTAAGGAGTCACACTCACGCCCAGCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTAGTGCCAGCGGAGGCGGTAAGGAGTCACACTCACGCCCAGCTGC  250

seq1  AGCAGGAGGAAGGCTGGTCGGAGAGGAAAGAGCATTGGATAACGACACGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAGGAAGGCTGGTCGGAGAGGAAAGAGCATTGGATAACGACACGC  300

seq1  GACTAGGACTAGAGAGACTGGCTACGTCCTGGCTCTGGCTGGTGACGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGGACTAGAGAGACTGGCTACGTCCTGGCTCTGGCTGGTGACGGAG  350

seq1  GACTGTCTCCGCAGGGCCCCCTGGAAGGAGGCCCCGCTCTTGAAAGTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCTCCGCAGGGCCCCCTGGAAGGAGGCCCCGCTCTTGAAAGTATT  400

seq1  GACTACTTCAATCTGCAACGGAGGAGAGAACGAGACAAGTTGCGAGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACTTCAATCTGCAACGGAGGAGAGAACGAGACAAGTTGCGAGAAGA  450

seq1  AACGAACACCACAGCTACACAACTGACGGGCGCAACATCACAAACAGCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAACACCACAGCTACACAACTGACGGGCGCAACATCACAAACAGCCG  500

seq1  CAGCCACGGCGACAAGGACAACACCACTTAAAACAAAAATACCAGACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACGGCGACAAGGACAACACCACTTAAAACAAAAATACCAGACACA  550

seq1  CTCCAAGGTTCGGAAAGATGTCTGCTCAGCTCTGGGCCCACCTGTAGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGGTTCGGAAAGATGTCTGCTCAGCTCTGGGCCCACCTGTAGGCC  600

seq1  CCGGGGATCCCAAGCGGGGGGTGGGGGGTAGGGA  634
      ||||||||||||||||||||||||||||||||||
seq2  CCGGGGATCCCAAGCGGGGGGTGGGGGGTAGGGA  634

seq1: chr6_113873664_113874723
seq2: B6Ng01-113L13.g_68_1134 (reverse)

seq1  TTGTTGTTGCT-GAGAAGGGATAGGAATCCCTCTAGTTGG-AGGGTCTGG  48
      | ||||||||| ||||||||||||||||||||  || ||| ||||||  |
seq2  TGGTTGTTGCTAGAGAAGGGATAGGAATCCCTTCAGGTGGAAGGGTCATG  50

seq1  GGTCCTTACAACCTCCCATGGCC-TTCCGCATTATAGCCTGCTGATGGTG  97
      ||||||||||||||||||||||| ||| ||||   | | ||  || ||||
seq2  GGTCCTTACAACCTCCCATGGCCTTTCGGCATATAAACATGTAGA-GGTG  99

seq1  GAGGTCCCATCTCCCATTCCATG-TTTCTTGGTGACTGGCTGGGACAGT-  145
      ||||||||| |||||||| || | |||| ||| ||   ||| | ||||| 
seq2  GAGGTCCCAACTCCCATTACAAGATTTCATGGGGAAATGCTTGAACAGTC  149

seq1  CGCCAGCATCTGGAGTA-TGCGTTTGACCCTTGCA-TTCGCCACGGCAGT  193
      ||||||||||| ||||| ||||||||||||||||| || |||||||||||
seq2  CGCCAGCATCT-GAGTATTGCGTTTGACCCTTGCATTTGGCCACGGCAGT  198

seq1  GGCTC-TCAACCTTCCT-AACGCTGTGACCCTTTAACAGTTCTTCATAAT  241
      ||||| ||||||||||| |||||||||||||||| |||||||||||||||
seq2  GGCTCTTCAACCTTCCTAAACGCTGTGACCCTTT-ACAGTTCTTCATAAT  247

seq1  GTGGTGACCCCCAACCATAAAATGATTTTTTGTTGCTATTTCATAACTGT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGACCCCCAACCATAAAATGATTTTTTGTTGCTATTTCATAACTGT  297

seq1  AATTTTGCACTTATGAATCATAATGTGAAATCTGTGTTTTCCGATAGTCT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGCACTTATGAATCATAATGTGAAATCTGTGTTTTCCGATAGTCT  347

seq1  AAAGTGACCCCCTGTGAAAGTCATTTGACTCCC-AAAAGGGTCACAGCCC  390
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAAGTGACCCCCTGTGAAAGTCATTTGACTCCCAAAAAGGGTCACAGCCC  397

seq1  ACAGATTGAAGAAGGCTGCTCTAGGGTGGGGACTGCTGGGTATGACTATT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTGAAGAAGGCTGCTCTAGGGTGGGGACTGCTGGGTATGACTATT  447

seq1  GTCAAGGCCTCAGTCCTAGTTTCTTCAGTTTGATTCTGGGATAAATTTTG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGCCTCAGTCCTAGTTTCTTCAGTTTGATTCTGGGATAAATTTTG  497

seq1  TCATGGAAAGACCCAGAGTTTCCACTGTGGGATCCTGGGGCCTCTTCCCA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAAAGACCCAGAGTTTCCACTGTGGGATCCTGGGGCCTCTTCCCA  547

seq1  CCCCGGGCCAGCTGTGTTCCCCCTTCATGTGTCTGTCTTCTAGTTGTTCT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGGCCAGCTGTGTTCCCCCTTCATGTGTCTGTCTTCTAGTTGTTCT  597

seq1  GAGTGTGTCGGGGGCTTTCAGCTGTCCTTACAGAGGAGATTCTGGCTAGT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGTCGGGGGCTTTCAGCTGTCCTTACAGAGGAGATTCTGGCTAGT  647

seq1  GACTCCACTCCAGCCTGGAAATAGAAGCCACTAAATGTGTGTTTCCCTCT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCACTCCAGCCTGGAAATAGAAGCCACTAAATGTGTGTTTCCCTCT  697

seq1  GCCTAAAGTTTTCTAGAATTCTCTTCATGTTCCATTTGTGTTTTTCCCTT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAAGTTTTCTAGAATTCTCTTCATGTTCCATTTGTGTTTTTCCCTT  747

seq1  TAGCCTGGGTTGGTCTAGAACTTTCTATGTAGCAGAGGCTGGCCTTGAAC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGGGTTGGTCTAGAACTTTCTATGTAGCAGAGGCTGGCCTTGAAC  797

seq1  TCATGGCAGCCCATCTGCCTCAGCCTCCCAAAGCTGAGATCACAGGCATG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCAGCCCATCTGCCTCAGCCTCCCAAAGCTGAGATCACAGGCATG  847

seq1  TGCTAGCATACTTCAGCTCATCTTCCAGGAATGCCTGCTTTTGTCAATGA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCATACTTCAGCTCATCTTCCAGGAATGCCTGCTTTTGTCAATGA  897

seq1  CTGCTATTGTCAATGTCTCCCGACTTCTCATCTGTCTCAGGAGAGACCTT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATTGTCAATGTCTCCCGACTTCTCATCTGTCTCAGGAGAGACCTT  947

seq1  CCTTTCAGTCAGGTGACAAGGGAAACTGGGGCCTCTGGGGTGTTTTCCCA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAGTCAGGTGACAAGGGAAACTGGGGCCTCTGGGGTGTTTTCCCA  997

seq1  TTCAGAGTTGTTGACAGGATGCTTGGTAGCTGGAGTCAACCTATGAAGTT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGTTGTTGACAGGATGCTTGGTAGCTGGAGTCAACCTATGAAGTT  1047

seq1  GAAGACTTGGTGGTGAATTC  1060
      ||||||||||||||||||||
seq2  GAAGACTTGGTGGTGAATTC  1067