BAC Information

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BAC

Clone NameB6Ng01-113L14
Chromosome6 (Build37)
Map Location 102,236,644 - 102,237,822
singlet/doubletsinglet
Overlap geneCntn3
Upstream genePdzrn3, EG666084, EG666123
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113L14.bB6Ng01-113L14.g
ACCDH919444DH919445
length7971,187
definitionDH919444|Mus musculus domesticus DNA, BAC clone: B6Ng01-113L14, 5' end.DH919445|Mus musculus domesticus DNA, BAC clone: B6Ng01-113L14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtgaactgtatgtagtgtatcctgtatgagttttttctttttt
tctttttccttttcctttacattttttttttttttttttgctaatatcca
cttattattgagtacataccatgcaagtccttttgggtctgagttacctc
actcaggatgatattttctagttccatccatttgcctacaaaagtcagga
tatccttgttcttaataggtgagtagtattcctttgtgtaaatgaacctc
attttctgtatccattcttctgttatgggacatctgggttgtttccagct
tcttgctatcacaaataaggccactatgaacataatggaacatgtgcccc
tgtggtatggtgggcatgttttgggtatattcccaatagtgatatagctg
ggttttaaggtatatctatttccaaatttctgaagaacctccagatcgac
tctcagagtgcttgtaccagtttgcaatgccaccagcaatggaagagtgt
tcctctttctccacatcctctccaacatgtgttgtcacctgacaatttga
tactagccattctaactggtataaggtggaatctcagggtcgttttgact
tgcagttctctgatcactaaggacttttgaacatttcttaaggtgtttct
cagccattcaagattcctcggttgtgaattctcagtttagttctataccc
catttattgattggattatttggttttttggtggttatcttcttgagttc
tttatatatttttagatattatccctctctcagatgaggggttagtg

gaattctcttttcaattgtgtgaatcactgataaaatcttgaatgacatc
aagagccttcctgcacttttaaatatgtctcaacctaaaatgggtcagat
gtccccagttgccaccacagaaaatggcccaagtttcttttacagttttg
cctaactgcagttttgtttgacagaatttcttctacaaaatgcccgggct
tgggattaaatctccttcataatagaatttcataatagaactagaaacaa
accccaagtgccagtagtatatgcattaatatttctccaggtaaacacca
gagtggcatatttcatgttaaattgactggttgtacacttcagtgacctg
ggaaggaatgtgcatgccaaagtgacatcgtccatcatggactgcttctc
agaaagcagaatttcacaccttcatgctctttatttattgctttgattgt
tagagactcttagctctccaattaaaaaaatatttgctattattaataat
accattatagcattgctaatataaagccaacaggcaaagttacttaacca
tagggcatttatgatttccatgaaattttctgaatcttttgtaaagccta
gctttttggagtctgaaattagcatttgtatactagcctcttaaatattg
taatacataaaaggatgtataaatgatatatatttggctttgctatatcc
aattaacacttataaatttttataaatgaactctcataggactgcagtag
atgtcatttttactttttccagaatgtaataaatcacataactctcaaat
attttaagtaaagcctatgacctacatatctttaaggcaggcatgcaaaa
ggctaacaaaacttgatgcagatctttccttctaagaaaaggggtctata
atatactgtgagtgttgcagatttctacttactgtttgtgaccactgtga
gccatatcaacatgtgggtaggcagcctatcgctaaatctccaaaagtct
tagattggtgttaatagtcatttactactattttgttgactttgagaaat
tatagttgcttttctatcttgtaatattccaggtcttttctattaaatat
ggatctttctaatggtatatttgaaaaccaagctgccccgttggcttcct
cacacacaactttatataccctcgtccagtttatcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_102236644_102237822
seq2: B6Ng01-113L14.g_68_1254 (reverse)

seq1  ATGATAAAAATGGAACGAGGTTATATAAAGTTG-GTGGTAGAGAGCCAAA  49
      ||||| ||| ||| |||||| |||||||||||| |||  ||  |||||| 
seq2  ATGAT-AAACTGG-ACGAGGGTATATAAAGTTGTGTGTGAGGAAGCCAAC  48

seq1  GGGGCAGCTTGTGTTTCAAATAATACAATTAGAAAGATCCATATGTAATA  99
      |||||||||||  |||||||| |||| ||||||||||||||||| |||||
seq2  GGGGCAGCTTGGTTTTCAAAT-ATACCATTAGAAAGATCCATATTTAATA  97

seq1  GAAAAGACATGGAATATTCCAAGATAGAAAAGCAACTATAA-TTCTCAAA  148
      |||||||| ||||||||| |||||||||||||||||||||| ||||||||
seq2  GAAAAGACCTGGAATATTACAAGATAGAAAAGCAACTATAATTTCTCAAA  147

seq1  GTCAAC-AAATAGTAGTAAATGACTATTTACAACCATCT-AGACTTTTGA  196
      |||||| ||||||||||||||||||||| ||| | |||| ||||||||| 
seq2  GTCAACAAAATAGTAGTAAATGACTATTAACACCAATCTAAGACTTTTGG  197

seq1  AGATTTAGCGATAGGCTGCCTAACCACATG-TGATATGGCTCACAGT-GT  244
      |||||||||||||||||||||| ||||||| |||||||||||||||| ||
seq2  AGATTTAGCGATAGGCTGCCTACCCACATGTTGATATGGCTCACAGTGGT  247

seq1  CACAAACAGTAAGTAGAAATCTGCAACACTCACAGTATA-TATAGAACCC  293
      ||||||||||||||||||||||||||||||||||||||| |||||| |||
seq2  CACAAACAGTAAGTAGAAATCTGCAACACTCACAGTATATTATAGACCCC  297

seq1  TTTTCTTAG-AGGAAAGATCTGCATCAAGTTTTGTTAGCC-TTTGCATGC  341
      ||||||||| |||||||||||||||||||||||||||||| |||||||||
seq2  TTTTCTTAGAAGGAAAGATCTGCATCAAGTTTTGTTAGCCTTTTGCATGC  347

seq1  CTGCCTT-AAGATTTGTAGGTCATAGGCTTTACTTAAAATATTTGAGAGT  390
      ||||||| ||||| ||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTAAAGATATGTAGGTCATAGGCTTTACTTAAAATATTTGAGAGT  397

seq1  TATGTGATTTATTACATTCTGGAAAAAGT-AAAATGACATCTACTGCAGT  439
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TATGTGATTTATTACATTCTGGAAAAAGTAAAAATGACATCTACTGCAGT  447

seq1  CCTATGAGAGTTCATTTATAAAAATTTATAAGTGTTAATTGGATATAGCA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGAGAGTTCATTTATAAAAATTTATAAGTGTTAATTGGATATAGCA  497

seq1  AAGCCAAATATATATCATTTATACATCCTTTTATGTATTACAATATTTAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAATATATATCATTTATACATCCTTTTATGTATTACAATATTTAA  547

seq1  GAGGCTAGTATACAAATGCTAATTTCAGACTCCAAAAAGCTAGGCTTTAC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTAGTATACAAATGCTAATTTCAGACTCCAAAAAGCTAGGCTTTAC  597

seq1  AAAAGATTCAGAAAATTTCATGGAAATCATAAATGCCCTATGGTTAAGTA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATTCAGAAAATTTCATGGAAATCATAAATGCCCTATGGTTAAGTA  647

seq1  ACTTTGCCTGTTGGCTTTATATTAGCAATGCTATAATGGTATTATTAATA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCCTGTTGGCTTTATATTAGCAATGCTATAATGGTATTATTAATA  697

seq1  ATAGCAAATATTTTTTTAATTGGAGAGCTAAGAGTCTCTAACAATCAAAG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAATATTTTTTTAATTGGAGAGCTAAGAGTCTCTAACAATCAAAG  747

seq1  CAATAAATAAAGAGCATGAAGGTGTGAAATTCTGCTTTCTGAGAAGCAGT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAATAAAGAGCATGAAGGTGTGAAATTCTGCTTTCTGAGAAGCAGT  797

seq1  CCATGATGGACGATGTCACTTTGGCATGCACATTCCTTCCCAGGTCACTG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATGGACGATGTCACTTTGGCATGCACATTCCTTCCCAGGTCACTG  847

seq1  AAGTGTACAACCAGTCAATTTAACATGAAATATGCCACTCTGGTGTTTAC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTACAACCAGTCAATTTAACATGAAATATGCCACTCTGGTGTTTAC  897

seq1  CTGGAGAAATATTAATGCATATACTACTGGCACTTGGGGTTTGTTTCTAG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAAATATTAATGCATATACTACTGGCACTTGGGGTTTGTTTCTAG  947

seq1  TTCTATTATGAAATTCTATTATGAAGGAGATTTAATCCCAAGCCCGGGCA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTATGAAATTCTATTATGAAGGAGATTTAATCCCAAGCCCGGGCA  997

seq1  TTTTGTAGAAGAAATTCTGTCAAACAAAACTGCAGTTAGGCAAAACTGTA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAGAAGAAATTCTGTCAAACAAAACTGCAGTTAGGCAAAACTGTA  1047

seq1  AAAGAAACTTGGGCCATTTTCTGTGGTGGCAACTGGGGACATCTGACCCA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACTTGGGCCATTTTCTGTGGTGGCAACTGGGGACATCTGACCCA  1097

seq1  TTTTAGGTTGAGACATATTTAAAAGTGCAGGAAGGCTCTTGATGTCATTC  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGTTGAGACATATTTAAAAGTGCAGGAAGGCTCTTGATGTCATTC  1147

seq1  AAGATTTTATCAGTGATTCACACAATTGAAAAGAGAATTC  1179
      ||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTATCAGTGATTCACACAATTGAAAAGAGAATTC  1187


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