BAC Information

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BAC

Clone NameB6Ng01-113M19
Chromosome6 (Build37)
Map Location 37,643,479 - 37,829,959
singlet/doubletdoublet
Overlap geneLOC100039636, LOC665102, Trim24
Upstream genePtn, LOC100039514, Dgki, EG665024, Creb3l2, Akr1d1, LOC665046, Ybx1-ps2
Downstream geneSvopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113M19.bB6Ng01-113M19.g
ACCDH919500DH919501
length1,0671,126
definitionDH919500|Mus musculus domesticus DNA, BAC clone: B6Ng01-113M19, 5' end.DH919501|Mus musculus domesticus DNA, BAC clone: B6Ng01-113M19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,643,479 - 37,644,532)(37,828,836 - 37,829,959)
sequence
gaattcaataaaccagcctgtttaactgagattagtgtctgagtggtttg
tgtgatgattcccagaccccaacgtatagaaatacaaataatatatttaa
atttaaatttctgtaagaataacaaaacatattgaacaatctttgtagtt
cagacataaattcaacaaactagtaaaattgtccatcatttatgttcttt
acaatacaaataagggggtgagctattttaacccctggacagccacagtc
ttacagattttctcaattgaggctccctcatctcagatgcctgtaatgtg
tcaggttgacataaaactagccagtataccaagtaatgtatttatgcagt
ttcacctatatcatggattatcaagcaagaattcttacaacagaattttc
tcagaaaatgttcattgaagtggaaactaaatagtcaacataatttcctc
tcttgaaaaaaaaatggaaataattagaattactataatatagtctttta
aagacgtctctgttgttgttgttgttgttgtttttgttttttggaggcag
gatttccctggctgtcctggaactcactctgctaactaggctggccttaa
actcagagatctgccttcctttgcctcctcaatgctgggcttaaaagctt
cctgctgccactgtcaccaccaccccacaccagcttcccaccccttaccc
cagattgaaaacatttttatgtgaacaaataatatatttaaatttaaatt
tctgtaagaataacaaaacatattgagcaatctttgtagttcagacataa
attcaacaaactaataaaattgatctctgcagatggaagaatttgtgtgc
tattctattttattgacctagtgcaaagtagagcaacgtacaatccatct
ctcaaataaggtcttaccttgcttcacatagacttaaaagactagaacac
tgttaacacaaaaatacagctctcctcctcaaaggaaaggggagagggtt
attttaaaagaccatataagtgacaaggaaattaaaaattttcggtttct
tagaaacaaggtttcca
gaattctttctgtcctctttttcttggcaaactccaggttcagaggatcc
aactccctcttctagcctcaaaggataccagggactcatgcagtacacat
tatagacagacatgcaggaaaaacactcacacacaaagtaaaattaaatg
tttaggactcctgtataagacaacttaacagtgctggagagttggtccag
tggtgagaagtgctcggtgctcttgcagagaacctgggctcacatctata
acttcaattccagagaatctgacacactcttctggcatctatgagcacca
ggcacatatgtgttatatatacatacatacatacatgcatgcagacatgc
aggcaggcaaaacaattcatatgcattaaggagaacctaggggaggggaa
tgaagataaatacaaaaatacatctaagaattaaaaactgggagcttcat
ggtagtgagtgctttatatttacaaggcttactcctcagcatcaacataa
cattattgcaattaagattaagatttgagcctgataaagcatgcctttga
acctagcactcaagagtcagaggtcacccaaggttacatagaataagatt
aatgttatacctgcattacctttccagcaagcaagcccctttgagacaaa
ctactatgagattccacctttcctgcaacctaataaagaatcccaagttt
cacagatagtaagtttcttatgacaatggcaaagtaactcaaggattaga
gacaaaaaaaggtggtttattataaatagcaacagcataaactcaaagta
tttgtgacaaagcaactcagtgcagaggttcctccatctaatattcttgc
ccaggccactttatgtttgacaagatctccttgatgtaaaaagctcagag
gaaaatcactaaactctattctaggaacccggaggtcacgataccccagc
tatttgatccctgctcaccagaagagaaggacattccacctctttatgtt
ctgactggaccaatgggaatacaaaggagctaagagaaaatggttctccc
agagggaaggcccagaagctacctttacttcactggttcctctccctcat
cctaatcatgccctctggccatgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_37643479_37644532
seq2: B6Ng01-113M19.b_50_1103

seq1  GAATTCAATAAACCAGCCTGTTTAACTGAGATTAGTGTCTGAGTGGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAAACCAGCCTGTTTAACTGAGATTAGTGTCTGAGTGGTTTG  50

seq1  TGTGATGATTCCCAGACCCCAACGTATAGAAATACAAATAATATATTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGATTCCCAGACCCCAACGTATAGAAATACAAATAATATATTTAA  100

seq1  ATTTAAATTTCTGTAAGAATAACAAAACATATTGAACAATCTTTGTAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATTTCTGTAAGAATAACAAAACATATTGAACAATCTTTGTAGTT  150

seq1  CAGACATAAATTCAACAAACTAGTAAAATTGTCCATCATTTATGTTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATAAATTCAACAAACTAGTAAAATTGTCCATCATTTATGTTCTTT  200

seq1  ACAATACAAATAAGGGGGTGAGCTATTTTAACCCCTGGACAGCCACAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACAAATAAGGGGGTGAGCTATTTTAACCCCTGGACAGCCACAGTC  250

seq1  TTACAGATTTTCTCAATTGAGGCTCCCTCATCTCAGATGCCTGTAATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGATTTTCTCAATTGAGGCTCCCTCATCTCAGATGCCTGTAATGTG  300

seq1  TCAGGTTGACATAAAACTAGCCAGTATACCAAGTAATGTATTTATGCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTGACATAAAACTAGCCAGTATACCAAGTAATGTATTTATGCAGT  350

seq1  TTCACCTATATCATGGATTATCAAGCAAGAATTCTTACAACAGAATTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTATATCATGGATTATCAAGCAAGAATTCTTACAACAGAATTTTC  400

seq1  TCAGAAAATGTTCATTGAAGTGGAAACTAAATAGTCAACATAATTTCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAATGTTCATTGAAGTGGAAACTAAATAGTCAACATAATTTCCTC  450

seq1  TCTTGAAAAAAAAATGGAAATAATTAGAATTACTATAATATAGTCTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAAAAAAAATGGAAATAATTAGAATTACTATAATATAGTCTTTTA  500

seq1  AAGACGTCTCTGTTGTTGTTGTTGTTGTTGTTTTTGTTTTTTGGAGGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACGTCTCTGTTGTTGTTGTTGTTGTTGTTTTTGTTTTTTGGAGGCAG  550

seq1  GATTTCCCTGGCTGTCCTGGAACTCACTCTGCTAACTAGGCTGGCCTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCCTGGCTGTCCTGGAACTCACTCTGCTAACTAGGCTGGCCTTAA  600

seq1  ACTCAGAGATCTGCCTTCCTTTGCCTCCTCAATGCTGGGCTTAAAAGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAGATCTGCCTTCCTTTGCCTCCTCAATGCTGGGCTTAAAAGCTT  650

seq1  CCTGCTGCCACTGTCACCACCACCCCACACCAGCTTCCCACCCCTTACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGCCACTGTCACCACCACCCCACACCAGCTTCCCACCCCTTACCC  700

seq1  CAGATTGAAAACATTTTTATGTGAACAAATAATATATTTAAATTTAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGAAAACATTTTTATGTGAACAAATAATATATTTAAATTTAAATT  750

seq1  TCTGTAAGAATAACAAAACATATTGAGCAATCTTTGTAGTTCAGACATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAGAATAACAAAACATATTGAGCAATCTTTGTAGTTCAGACATAA  800

seq1  ATTCAACAAACTAATAAAATTGATCTCTGCAGATGGAAGAATTTGTGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACAAACTAATAAAATTGATCTCTGCAGATGGAAGAATTTGTGTGC  850

seq1  TATTTCTATTCTATTGACCTAGTGCAAAGTAGAGCAACGTACCATCCATC  900
      || ||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  TA-TTCTATTTTATTGACCTAGTGCAAAGTAGAGCAACGTACAATCCATC  899

seq1  TCTCAAAT-AGGTC-TACCTTGCTTCACATAGACTT-AAAGACTAAGAAC  947
      |||||||| ||||| ||||||||||||||||||||| ||||||| |||||
seq2  TCTCAAATAAGGTCTTACCTTGCTTCACATAGACTTAAAAGACT-AGAAC  948

seq1  ACTGTTAACACAAAAATACAGCTCT-CACCTCAAAGGAAAAGGGAGATGG  996
      ||||||||||||||||||||||||| | |||||||||||| |||||| ||
seq2  ACTGTTAACACAAAAATACAGCTCTCCTCCTCAAAGGAAAGGGGAGAGGG  998

seq1  TTTATTTAAAAGACCAATATAAGTGACCAAGGAAA-TAAAAAATTTCGGT  1045
      ||  ||||||||||| |||||||||| |||||||| |||||| |||||||
seq2  TTATTTTAAAAGACC-ATATAAGTGA-CAAGGAAATTAAAAATTTTCGGT  1046

seq1  TTCTCTAGA  1054
      |||| ||||
seq2  TTCT-TAGA  1054

seq1: chr6_37828836_37829959
seq2: B6Ng01-113M19.g_72_1197 (reverse)

seq1  CCCCATGGCCAGA-GGCATGA-TAGGGAGGGGGAGAAGGGACCAGGTGTA  48
      ||||||||||||| ||||||| ||||  | ||||| ||| |||| ||| |
seq2  CCCCATGGCCAGAGGGCATGATTAGGATGAGGGAG-AGGAACCA-GTGAA  48

seq1  GTAGAGTTAGCTTCCTGGCCTTCCCTCTGGGGAGAACCATTTTCTC-TAG  97
      ||| || |||||||  |||||||||||| ||||||||||||||||| |||
seq2  GTAAAGGTAGCTTCTGGGCCTTCCCTCT-GGGAGAACCATTTTCTCTTAG  97

seq1  CTCCTTTTGTATTTCCCATTGGTCCAGTCAGAACATAAAGAGGTGGAATG  147
      |||| |||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTCC-TTTGTA-TTCCCATTGGTCCAGTCAGAACATAAAGAGGTGGAATG  145

seq1  TCCTTCTCTTCTGGTGAGCAGGGATCAATTAGCTGGGGTATCGTGACCT-  196
      |||||||||||||||||||||||||||| |||||||||||||||||||| 
seq2  TCCTTCTCTTCTGGTGAGCAGGGATCAAATAGCTGGGGTATCGTGACCTC  195

seq1  CGGGTTCCTAGAATAGAGTTTAGTGATTTTCCTCTGGGCTTTTTACATCA  246
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CGGGTTCCTAGAATAGAGTTTAGTGATTTTCCTCTGAGCTTTTTACATCA  245

seq1  AGGAGATCTTGTCAAACATAAAGTGGCCTGGGCAAGAATA-TAGATGGAG  295
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGGAGATCTTGTCAAACATAAAGTGGCCTGGGCAAGAATATTAGATGGAG  295

seq1  GAACCTCTGCACTGAGTTGCTTTGTCACAAATAC-TTGAGTTTATGCTGT  344
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAACCTCTGCACTGAGTTGCTTTGTCACAAATACTTTGAGTTTATGCTGT  345

seq1  TGCTATTTATAATAAACCACCTTTTTTTGTCTCTAATCCTTGAGTTAC-T  393
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGCTATTTATAATAAACCACCTTTTTTTGTCTCTAATCCTTGAGTTACTT  395

seq1  TGCCATTGTCATAAGAAACTTACTATCTGTGAAACTTGGGATTCTTTATT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTGTCATAAGAAACTTACTATCTGTGAAACTTGGGATTCTTTATT  445

seq1  AGGTTGCAGGAAAGGTGGAATCTCATAGTAGTTTGTCTCAAAGGGGCTTG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGCAGGAAAGGTGGAATCTCATAGTAGTTTGTCTCAAAGGGGCTTG  495

seq1  CTTGCTGGAAAGGTAATGCAGGTATAACATTAATCTTATTCTATGTAACC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGGAAAGGTAATGCAGGTATAACATTAATCTTATTCTATGTAACC  545

seq1  TTGGGTGACCTCTGACTCTTGAGTGCTAGGTTCAAAGGCATGCTTTATCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGACCTCTGACTCTTGAGTGCTAGGTTCAAAGGCATGCTTTATCA  595

seq1  GGCTCAAATCTTAATCTTAATTGCAATAATGTTATGTTGATGCTGAGGAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAAATCTTAATCTTAATTGCAATAATGTTATGTTGATGCTGAGGAG  645

seq1  TAAGCCTTGTAAATATAAAGCACTCACTACCATGAAGCTCCCAGTTTTTA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTTGTAAATATAAAGCACTCACTACCATGAAGCTCCCAGTTTTTA  695

seq1  ATTCTTAGATGTATTTTTGTATTTATCTTCATTCCCCTCCCCTAGGTTCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAGATGTATTTTTGTATTTATCTTCATTCCCCTCCCCTAGGTTCT  745

seq1  CCTTAATGCATATGAATTGTTTTGCCTGCCTGCATGTCTGCATGCATGTA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATGCATATGAATTGTTTTGCCTGCCTGCATGTCTGCATGCATGTA  795

seq1  TGTATGTATGTATATATAACACATATGTGCCTGGTGCTCATAGATGCCAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTATGTATATATAACACATATGTGCCTGGTGCTCATAGATGCCAG  845

seq1  AAGAGTGTGTCAGATTCTCTGGAATTGAAGTTATAGATGTGAGCCCAGGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGTGTCAGATTCTCTGGAATTGAAGTTATAGATGTGAGCCCAGGT  895

seq1  TCTCTGCAAGAGCACCGAGCACTTCTCACCACTGGACCAACTCTCCAGCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCAAGAGCACCGAGCACTTCTCACCACTGGACCAACTCTCCAGCA  945

seq1  CTGTTAAGTTGTCTTATACAGGAGTCCTAAACATTTAATTTTACTTTGTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAAGTTGTCTTATACAGGAGTCCTAAACATTTAATTTTACTTTGTG  995

seq1  TGTGAGTGTTTTTCCTGCATGTCTGTCTATAATGTGTACTGCATGAGTCC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTGTTTTTCCTGCATGTCTGTCTATAATGTGTACTGCATGAGTCC  1045

seq1  CTGGTATCCTTTGAGGCTAGAAGAGGGAGTTGGATCCTCTGAACCTGGAG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTATCCTTTGAGGCTAGAAGAGGGAGTTGGATCCTCTGAACCTGGAG  1095

seq1  TTTGCCAAGAAAAAGAGGACAGAAAGAATTC  1124
      |||||||||||||||||||||||||||||||
seq2  TTTGCCAAGAAAAAGAGGACAGAAAGAATTC  1126