BAC Information

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BAC

Clone NameB6Ng01-114K03
Chromosome6 (Build37)
Map Location 26,755,186 - 26,904,233
singlet/doubletdoublet
Overlap genenone
Upstream genePot1a, EG626912, LOC100041210
Downstream geneLOC100041247, Grm8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114K03.bB6Ng01-114K03.g
ACCDH920107DH920108
length1,1371,137
definitionDH920107|Mus musculus domesticus DNA, BAC clone: B6Ng01-114K03, 5' end.DH920108|Mus musculus domesticus DNA, BAC clone: B6Ng01-114K03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,903,073 - 26,904,233)(26,755,186 - 26,756,340)
sequence
gaattctcttataattccccaattcagacatatcttgagaggattttcct
tgagatagaatttttattaagccctgaaatgctgtgtttttcccatgtat
tacatttcggtgactatttttcactgtcattaatgattgtagtggctatt
cctggttgtcaacttgacaatatttggaatgaactacaatccggaattgg
aaggctcaccagtgacccttatctggaggcttggagatccttatctggat
cttggtttgaagatcttgagccatagtggctatggattccagaagattga
atctccgagtttaaggaacacacctttaatctgggctacaccttctgctg
gagacaatataaggacattggaagaagggagtctagctcttgctcttgct
cctttgcctgcttgccgtgtgagactgagtaactgctagatccttggact
tccattcacagctgcgactgaacaattgttgggaattgggctgccgactg
taagtcatcaataaattcctttactatctagagactatccataagttctg
tgactctagagaaccctgactaatacaatgatgattaagataattatatt
cctgaataagaaacccttatcaaattatcaccttaatatctggtgttggg
aatgtttcaaaattcttccatagaatacaaaccctaggggctagagagat
ggcttgctgttaagagaacagactgctcttccagaggtccgtagttcaat
taccagcaaccacatggtggctcacaactatctgtaatgggatctgatgc
cctcttctggtgtggctgaagacagctacagtgtactcatgtaaataaat
aaataaataaatctataaaaaattaaaaagaatacaaacctagaatactt
cttgaccagctcatgatacttctccttgcagctcttactcctgtgaacct
cttctcatgtccagccccttctattatacaatacttaccagttttcttca
taaagcctgtgctttttcagagtcagattttatataccccaatttctatg
actcaaagctcaaagcccaaacactgattgaatcagtactacaaactcac
ccctatttacaatattgtcgaaatttcttaatatccc
gaattctgtttagattctttgttccatcctcactaatgagacagatattg
ataaagcatcaaattttgcattttccatgaagcagataaataactatatt
acctaagtcagattgttattctctgcctaatgaactccagggagatggcc
cctcaagagacccgagtaaactttccataattttttttagtcatcagaga
aaagagtttttcctgctttttaactataccaactaaataattaaatataa
tgatacaaatgtatatttatatacttacaaaatctatgccatcttaggca
atgtcaggccactgtttttaattttccttttcattacagttgatatgtgt
agatgtggatttacactgtgatatattaattctatggtctttttaaaagc
aattgtgaattttcatcactgccaatctcctttctgcactagctacaaga
tgtccattaatttttaaatcctactgttcctttaaattttaagagaattt
gttatattaggagcaagttccaagacagccaaggctatacagaaaaccct
tccccactctccccaaaaaagagagtgaaagaaaataaacaaaatgtact
attaatataatgaggattactaagaagaaagtacctactccggtgacatg
gacaattcaagacctatggtttaagtgatagcattaacatagaggggaac
agaaccacagttcagtaaacagacaaagatggatgagttcttgagagtta
tagatattagagaatgtggtgaaatgacatgcttagctacttatgtgtac
tggtttcctgaaccttaacctcttctatgatgcatctgaaaagcaacatg
aaagctgcaaattagaggcttcatatttggctatttattgagagccactt
atcacaatttagaaaagaagctcagctgtgctgtgatggttctcatctta
atcccaacactcagaggcagagatggcaagatcattctgagtttgaagaa
agagggagttcatgtagcttcagcaaggcgaagaatcttgttttgaagag
aacaaaacaaacaaacaaaattaggaaagaactcatctagagccatactt
gggattcaagaatcaggggaaatacattattatattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_26903073_26904233
seq2: B6Ng01-114K03.b_47_1183 (reverse)

seq1  GGGATATTAAGAAATATTTTGGACAATAATAGTAAAAATAAGTGGTGAGT  50
      ||||||||||||||   ||| |||||| || |||||    || |||||||
seq2  GGGATATTAAGAAA---TTTCGACAAT-ATTGTAAA---TAGGGGTGAGT  43

seq1  TTGTAGTACTGAATTTCAATCAGTGTTTGGGCTTATGAGCTTATGAGTCA  100
      ||||||||||||  |||||||||||||||||||| ||||||| |||||||
seq2  TTGTAGTACTGA--TTCAATCAGTGTTTGGGCTT-TGAGCTT-TGAGTCA  89

seq1  TAGAAATTGGGGTATATAAAATCTGGACTCCTTGAAAAAGCACAGGCTTT  150
      |||||||||||||||||||||||| |||||  ||||||||||||||||||
seq2  TAGAAATTGGGGTATATAAAATCT-GACTC--TGAAAAAGCACAGGCTTT  136

seq1  TAATTGAAGAGAACTGGTAAGTATTGTAATAATAG-AGGGGCTGGACATG  199
          |||||| |||||||||||||||| ||||||| ||||||||||||||
seq2  ---ATGAAGAAAACTGGTAAGTATTGT-ATAATAGAAGGGGCTGGACATG  182

seq1  AG-AGAGGTTCACCAGGGAGTAAGAGCTGCAAGGAGGAAGTATCATGAGC  248
      || ||||||||||   ||||||||||||||||||| ||||||||||||||
seq2  AGAAGAGGTTCAC--AGGAGTAAGAGCTGCAAGGA-GAAGTATCATGAGC  229

seq1  TGGTCAAGAAGTATTCTAGGTTTTGTATTCTTTTTTAATTTTTTTATAGA  298
      |||||||||||||||||||| ||||||||||||||  | |||||||||||
seq2  TGGTCAAGAAGTATTCTAGG-TTTGTATTCTTTTT--AATTTTTTATAGA  276

seq1  TTTATTTATTTTATTTTATTTACATGAGTACACTGTAGCTGTCTTCAGCC  348
      |||||||||||   ||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTT--ATTTATTTACATGAGTACACTGTAGCTGTCTTCAGCC  324

seq1  ACACCAGAAGAGGGCATCAGATCCCATTACAGATAGTTGTGAGCCACCAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGAAGAGGGCATCAGATCCCATTACAGATAGTTGTGAGCCACCAT  374

seq1  GTGGTTGCTGGTAATTGAACTACGGACCTCTGGAAGAGCAGTCTGTTCTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGCTGGTAATTGAACTACGGACCTCTGGAAGAGCAGTCTGTTCTC  424

seq1  TTAACAGCAAGCCATCTCTCTAGCCCCTAGGGTTTGTATTCTATGGAAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGCAAGCCATCTCTCTAGCCCCTAGGGTTTGTATTCTATGGAAGA  474

seq1  ATTTTGAAACATTCCCAACACCAGATATTAAGGTGATAATTTGATAAGGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAAACATTCCCAACACCAGATATTAAGGTGATAATTTGATAAGGG  524

seq1  TTTCTTATTCAGGAATATAATTATCTTAATCATCATTGTATTAGTCAGGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATTCAGGAATATAATTATCTTAATCATCATTGTATTAGTCAGGG  574

seq1  TTCTCTAGAGTCACAGAACTTATGGATAGTCTCTAGATAGTAAAGGAATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAGAGTCACAGAACTTATGGATAGTCTCTAGATAGTAAAGGAATT  624

seq1  TATTGATGACTTACAGTCGGCAGCCCAATTCCCAACAATTGTTCAGTCGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATGACTTACAGTCGGCAGCCCAATTCCCAACAATTGTTCAGTCGC  674

seq1  AGCTGTGAATGGAAGTCCAAGGATCTAGCAGTTACTCAGTCTCACACGGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGAATGGAAGTCCAAGGATCTAGCAGTTACTCAGTCTCACACGGC  724

seq1  AAGCAGGCAAAGGAGCAAGAGCAAGAGCTAGACTCCCTTCTTCCAATGTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGCAAAGGAGCAAGAGCAAGAGCTAGACTCCCTTCTTCCAATGTC  774

seq1  CTTATATTGTCTCCAGCAGAAGGTGTAGCCCAGATTAAAGGTGTGTTCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATTGTCTCCAGCAGAAGGTGTAGCCCAGATTAAAGGTGTGTTCCT  824

seq1  TAAACTCGGAGATTCAATCTTCTGGAATCCATAGCCACTATGGCTCAAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCGGAGATTCAATCTTCTGGAATCCATAGCCACTATGGCTCAAGA  874

seq1  TCTTCAAACCAAGATCCAGATAAGGATCTCCAAGCCTCCAGATAAGGGTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAACCAAGATCCAGATAAGGATCTCCAAGCCTCCAGATAAGGGTC  924

seq1  ACTGGTGAGCCTTCCAATTCCGGATTGTAGTTCATTCCAAATATTGTCAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGAGCCTTCCAATTCCGGATTGTAGTTCATTCCAAATATTGTCAA  974

seq1  GTTGACAACCAGGAATAGCCACTACAATCATTAATGACAGTGAAAAATAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACAACCAGGAATAGCCACTACAATCATTAATGACAGTGAAAAATAG  1024

seq1  TCACCGAAATGTAATACATGGGAAAAACACAGCATTTCAGGGCTTAATAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCGAAATGTAATACATGGGAAAAACACAGCATTTCAGGGCTTAATAA  1074

seq1  AAATTCTATCTCAAGGAAAATCCTCTCAAGATATGTCTGAATTGGGGAAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTATCTCAAGGAAAATCCTCTCAAGATATGTCTGAATTGGGGAAT  1124

seq1  TATAAGAGAATTC  1161
      |||||||||||||
seq2  TATAAGAGAATTC  1137

seq1: chr6_26755186_26756340
seq2: B6Ng01-114K03.g_68_1204

seq1  GAATTCTGTTTAGATTCTTTGTTCCATCCTCACTAATGAGACAGATATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTAGATTCTTTGTTCCATCCTCACTAATGAGACAGATATTG  50

seq1  ATAAAGCATCAAATTTTGCATTTTCCATGAAGCAGATAAATAACTATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCATCAAATTTTGCATTTTCCATGAAGCAGATAAATAACTATATT  100

seq1  ACCTAAGTCAGATTGTTATTCTCTGCCTAATGAACTCCAGGGAGATGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGTCAGATTGTTATTCTCTGCCTAATGAACTCCAGGGAGATGGCC  150

seq1  CCTCAAGAGACCCGAGTAAACTTTCCATAATTTTTTTTAGTCATCAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGAGACCCGAGTAAACTTTCCATAATTTTTTTTAGTCATCAGAGA  200

seq1  AAAGAGTTTTTCCTGCTTTTTAACTATACCAACTAAATAATTAAATATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTTTTTCCTGCTTTTTAACTATACCAACTAAATAATTAAATATAA  250

seq1  TGATACAAATGTATATTTATATACTTACAAAATCTATGCCATCTTAGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACAAATGTATATTTATATACTTACAAAATCTATGCCATCTTAGGCA  300

seq1  ATGTCAGGCCACTGTTTTTAATTTTCCTTTTCATTACAGTTGATATGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGGCCACTGTTTTTAATTTTCCTTTTCATTACAGTTGATATGTGT  350

seq1  AGATGTGGATTTACACTGTGATATATTAATTCTATGGTCTTTTTAAAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGGATTTACACTGTGATATATTAATTCTATGGTCTTTTTAAAAGC  400

seq1  AATTGTGAATTTTCATCACTGCCAATCTCCTTTCTGCACTAGCTACAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGAATTTTCATCACTGCCAATCTCCTTTCTGCACTAGCTACAAGA  450

seq1  TGTCCATTAATTTTTAAATCCTACTGTTCCTTTAAATTTTAAGAGAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATTAATTTTTAAATCCTACTGTTCCTTTAAATTTTAAGAGAATTT  500

seq1  GTTATATTAGGAGCAAGTTCCAAGACAGCCAAGGCTATACAGAAAACCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATTAGGAGCAAGTTCCAAGACAGCCAAGGCTATACAGAAAACCCT  550

seq1  TCCCCACTCTCCCCAAAAAAGAGAGTGAAAGAAAATAAACAAAATGTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACTCTCCCCAAAAAAGAGAGTGAAAGAAAATAAACAAAATGTACT  600

seq1  ATTAATATAATGAGGATTACTAAGAAGAAAGTACCTACTCCGGTGACATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATATAATGAGGATTACTAAGAAGAAAGTACCTACTCCGGTGACATG  650

seq1  GACAATTCAAGACCTATGGTTTAAGTGATAGCATTAACATAGAGGGGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTCAAGACCTATGGTTTAAGTGATAGCATTAACATAGAGGGGAAC  700

seq1  AGAACCACAGTTCAGTAAACAGACAAAGATGGATGAGTTCTTGAGAGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCACAGTTCAGTAAACAGACAAAGATGGATGAGTTCTTGAGAGTTA  750

seq1  TAGATATTAGAGAATGTGGTGAAATGACATGCTTAGCTACTTATGTGTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATTAGAGAATGTGGTGAAATGACATGCTTAGCTACTTATGTGTAC  800

seq1  TGGTTTCCTGAACCTTAACCTCTTCTATGATGCATCTGAAAAGCAACATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCCTGAACCTTAACCTCTTCTATGATGCATCTGAAAAGCAACATG  850

seq1  AAAGCTGCAAAATTAGAGGCTTCATATTTGGCTATTTATTGAGAGCCACT  900
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGC-AAATTAGAGGCTTCATATTTGGCTATTTATTGAGAGCCACT  899

seq1  TATCACAATTTAGAAAAAGAAGCTCAGCTGTGCTGTGATGGTTCTCATCT  950
      ||||||||||||| ||||||||||||||||||||||||||||||||||| 
seq2  TATCACAATTTAG-AAAAGAAGCTCAGCTGTGCTGTGATGGTTCTCATC-  947

seq1  TTAATCCCAACACTCAGGAGGCAGAAGATGGCAAGATCATTCTGAGTTTG  1000
      |||||||||||||||| ||||||| |||||||||||||||||||||||||
seq2  TTAATCCCAACACTCA-GAGGCAG-AGATGGCAAGATCATTCTGAGTTTG  995

seq1  AAGACAGAGTGAGTTCCATGGTAGCCTCAGCAAGGCGAAGAAATCCTGTC  1050
      |||| |||| ||||| ||| ||||| |||||||||||||| |||| ||| 
seq2  AAGAAAGAGGGAGTT-CAT-GTAGCTTCAGCAAGGCGAAG-AATCTTGTT  1042

seq1  TTGAAAGAGGAAACAAGACAAACAAACAAAAATTAGGAAAGAACATCATC  1100
      ||| |||||  ||||| |||||||||| |||||||||||||||| |||||
seq2  TTG-AAGAG--AACAAAACAAACAAAC-AAAATTAGGAAAGAAC-TCATC  1087

seq1  TAGAGCCCATAACTGGGGAATTCAAGAATTCAGGGGAAAATACATTATTA  1150
      ||||| |||||  ||||  ||||||||| ||||||| |||||||||||||
seq2  TAGAG-CCATACTTGGG--ATTCAAGAA-TCAGGGG-AAATACATTATTA  1132

seq1  TATTT  1155
      |||||
seq2  TATTT  1137