BAC Information

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BAC

Clone NameB6Ng01-114K06
Chromosome6 (Build37)
Map Location 126,030,909 - 126,169,241
singlet/doubletdoublet
Overlap geneNtf3, LOC100043565
Upstream geneGpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b
Downstream geneLOC667427, LOC100043567, Kcna5, Kcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114K06.bB6Ng01-114K06.g
ACCDH920113DH920114
length1,2141,106
definitionDH920113|Mus musculus domesticus DNA, BAC clone: B6Ng01-114K06, 5' end.DH920114|Mus musculus domesticus DNA, BAC clone: B6Ng01-114K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,167,995 - 126,169,241)(126,030,909 - 126,032,025)
sequence
gaattccagaggagcgaaacatgtgtgaaggcttatgacagcactgcgtg
tttgagaaactgcaaacattacaaatactgtggctaaccagaggggagct
ggaggaggggctgggaaacatctcaggagtattggcagtgtgcacagtca
gtctctcaaagaccttgtggctactcagggaagggtgggcttcgacctgc
ggcaatggacaaagcttttaattatcttttgttggtgttattttactgca
gaagccatgtagaatttcaggtggctgatgtcaatagcatgaagaaaaca
tatggaagaaaattgtagaaagagtctatgtcaaaggcagacacagtaag
aacagaggtcagcattcttgctgccccatcttcttcagtgttcctggacc
ttgaagagagtgaattagatgtcttgtttaagaattgtgtgtgattgtat
ttaatttttccataaacctaataaaaactcaaaatacaaagtctaagatt
tttaaacacatgtacacacacacacacacacacacacacacacacacaca
ccacacacacacacacacacacgcacacacacacacgtgcacgcgcatat
gcatgcacacatgcacacacatgcacttacacacatttctggcttttaca
taaacttttccagtccttgtccaagtaaatggaagtttaggccaggaatt
tagcttcacatgagttgtctgcatgtaaaaacttctcttcagcacaggaa
gaagtgacctctaaccctgccaagttacatcagagagggagaggaacgag
tcccagagtgatgaatgaggccagtgaagagactttatacaaatttctct
actttaaaactgacaagctgactccccagagaggcaagtaattcataatc
gcctgttgattaggagttgagacagataagagcagcaatggcgtgcccag
agagcagacatgagtaccacaagtgacaggtgtatgtattgctagtacat
ggtgcttgtgctacagacagcattccagagttaagcccggtctcatcatt
ttgattcaggctgtaggtgaaccgaagcatcactcttctgaaacgagaaa
aagacgagtcagacctctcatcttcctttctctctcgactgtgaagaaac
ctaggcaatccttggactttcgaaacgaaggacatcctgaagctgagggt
caggggaagcaact
gaattccagccacagaatgcagagagagctggctaggaagaatagctcta
tctggaagtgctaggtttgacttgtctcaaagaataatgtggaaaagtaa
cagggcacactccgggacatcaaccgcgggcctacacatggacgagtaat
gaagggtgcggtctaccatttccatacctacatttatgtaaatcatgtat
gcatgcatgcacattccaaacatgggaaaataatgctaaagctgtcagca
aagtgattttatttgctgttgttttgttttaagacagaatctcacgatga
agcctcgctgggtcagcctcaaactcttgatccccctgtctaagcctctt
aagtttgagcgtggggcttaagggagtgtgccacatgaccagcaagcagc
acagtgtctctctgcagccatgattcctaggacgactttgccaaccagaa
gccatgaaacacattacccgtgactcagtttccttgatgacaaaaaagga
aggaactgtaagacccacctctcaagaacaaagaaggggtggtattttag
tcacttctctcagtgctgtgataaaaatcctgaatcaggcaactaaggaa
ggaagggtttactttggtttaccatttgagggcacagctcaccccagcaa
ggaaggcgtggtgtcagagctgtgaagcaggtggtcctactgcatctgaa
gtcaggaagcagagcctgatgaaagtctttgcttagctcagtttctcctc
tttattcagtctggaacctgagcccatggaatggtactgcctacatttgg
ggtggatcaccccacatcaaagaacccaaggtagacattccctcgaagac
agagccagaggttcgtcttcaacatgattccaaattgtctggttggaaat
caatatttatcctcacagaagaggcaactactcggaggaaactgtccact
tcaaattatatggctgccacagggatgtagtagagtttatttgtactttc
tgaattctcttacattttggttctgactagcctttaatgatgagccatct
tctcagctgcttctgaatctcaaagtgatgctatagaatctattctcatg
ctattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_126167995_126169241
seq2: B6Ng01-114K06.b_45_1258 (reverse)

seq1  AGTT-CTTCCCACTGACCCTCAGACTCTCAGATAGTCCACTCTGTTTTCT  49
      |||| |||||| ||||||||||| || ||||   |||  ||  ||||   
seq2  AGTTGCTTCCC-CTGACCCTCAG-CT-TCAGGATGTC--CTTCGTTT--C  43

seq1  GAGAAGTTTCCCAGGAGTTTGCCTAGGTATCTCTTCACAGTCCGGAGGAG  99
      || |||  ||| ||||  |||||||||  | |||||||||||  || |||
seq2  GA-AAG--TCCAAGGA--TTGCCTAGG--TTTCTTCACAGTC--GA-GAG  83

seq1  AGAAGGGAAGATGGAGAAGTCTGGACTTCTGCTCTTCTCTGTTTTCAGAA  149
      |||| ||||||| |||| |||| ||||  |  | |||||   ||||||||
seq2  AGAAAGGAAGAT-GAGAGGTCT-GACTCGTCTTTTTCTC--GTTTCAGAA  129

seq1  GAGTGATTGCTTTTGGGTCCACTTACAGCCTGAATC-AAATGATGGAGAC  198
      |||||| |||  || ||| ||| ||||||||||||| ||||||| |||||
seq2  GAGTGA-TGC--TTCGGTTCACCTACAGCCTGAATCAAAATGAT-GAGAC  175

seq1  CGGGCTTAACTCTGGAATTGCTGTCCTTGTAGCCACAAGCACCATTGTAC  248
      ||||||||||||||||| |||||||  ||||| ||||||||||| |||||
seq2  CGGGCTTAACTCTGGAA-TGCTGTC--TGTAG-CACAAGCACCA-TGTAC  220

seq1  TAGCATTACATTACACCTGTCACTTGTGGTTACTCATGTCCTGCTCTCTG  298
      ||||| |||| |||||||||||||||||| ||||||||| ||||||||||
seq2  TAGCAATACA-TACACCTGTCACTTGTGG-TACTCATGT-CTGCTCTCTG  267

seq1  GGCACGCCATTGCTGCTCCTTATCTGTTCTCAACTCCTAATCAACAGGCG  348
      ||||||||||||||||| |||||||| |||||||||||||||||||||||
seq2  GGCACGCCATTGCTGCT-CTTATCTG-TCTCAACTCCTAATCAACAGGCG  315

seq1  ATTATGAATTACTTGCCTCTCT-GGGAGTCAGCTTGTCAGTTTTTAAAGT  397
      |||||||||||||||||||||| ||||||||||||||||| |||||||||
seq2  ATTATGAATTACTTGCCTCTCTGGGGAGTCAGCTTGTCAG-TTTTAAAGT  364

seq1  AGAGAAATTTGTATAAAGTCTCTTCACTGGCCTCATTCATCACTCTGGGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATTTGTATAAAGTCTCTTCACTGGCCTCATTCATCACTCTGGGA  414

seq1  CTCGTTCCTCTCCCTCTCTGATGTAACTTGGCAGGGTTAGAGGTCACTTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTCCTCTCCCTCTCTGATGTAACTTGGCAGGGTTAGAGGTCACTTC  464

seq1  TTCCTGTGCTGAAGAGAAGTTTTTACATGCAGACAACTCATGTGAAGCTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTGCTGAAGAGAAGTTTTTACATGCAGACAACTCATGTGAAGCTA  514

seq1  AATTCCTGGCCTAAACTTCCATTTACTTGGACAAGGACTGGAAAAGTTTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTGGCCTAAACTTCCATTTACTTGGACAAGGACTGGAAAAGTTTA  564

seq1  TGTAAAAGCCAGAAATGTGTGTAAGTGCATGTGTGTGCATGTGTGCATGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAGCCAGAAATGTGTGTAAGTGCATGTGTGTGCATGTGTGCATGC  614

seq1  ATATGCGCGTGCACGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCGCGTGCACGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGG  664

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATGTGTTTAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATGTGTTTAAA  714

seq1  AATCTTAGACTTTGTATTTTGAGTTTTTATTAGGTTTATGGAAAAATTAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAGACTTTGTATTTTGAGTTTTTATTAGGTTTATGGAAAAATTAA  764

seq1  ATACAATCACACACAATTCTTAAACAAGACATCTAATTCACTCTCTTCAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATCACACACAATTCTTAAACAAGACATCTAATTCACTCTCTTCAA  814

seq1  GGTCCAGGAACACTGAAGAAGATGGGGCAGCAAGAATGCTGACCTCTGTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAGGAACACTGAAGAAGATGGGGCAGCAAGAATGCTGACCTCTGTT  864

seq1  CTTACTGTGTCTGCCTTTGACATAGACTCTTTCTACAATTTTCTTCCATA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGTGTCTGCCTTTGACATAGACTCTTTCTACAATTTTCTTCCATA  914

seq1  TGTTTTCTTCATGCTATTGACATCAGCCACCTGAAATTCTACATGGCTTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTTCATGCTATTGACATCAGCCACCTGAAATTCTACATGGCTTC  964

seq1  TGCAGTAAAATAACACCAACAAAAGATAATTAAAAGCTTTGTCCATTGCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTAAAATAACACCAACAAAAGATAATTAAAAGCTTTGTCCATTGCC  1014

seq1  GCAGGTCGAAGCCCACCCTTCCCTGAGTAGCCACAAGGTCTTTGAGAGAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTCGAAGCCCACCCTTCCCTGAGTAGCCACAAGGTCTTTGAGAGAC  1064

seq1  TGACTGTGCACACTGCCAATACTCCTGAGATGTTTCCCAGCCCCTCCTCC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTGCACACTGCCAATACTCCTGAGATGTTTCCCAGCCCCTCCTCC  1114

seq1  AGCTCCCCTCTGGTTAGCCACAGTATTTGTAATGTTTGCAGTTTCTCAAA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCCTCTGGTTAGCCACAGTATTTGTAATGTTTGCAGTTTCTCAAA  1164

seq1  CACGCAGTGCTGTCATAAGCCTTCACACATGTTTCGCTCCTCTGGAATTC  1247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCAGTGCTGTCATAAGCCTTCACACATGTTTCGCTCCTCTGGAATTC  1214

seq1: chr6_126030909_126032025
seq2: B6Ng01-114K06.g_66_1171

seq1  GAATTCCAGCCACAGAATGCAGAGAGAGCTGGCTAGGAAGAATAGCTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCACAGAATGCAGAGAGAGCTGGCTAGGAAGAATAGCTCTA  50

seq1  TCTGGAAGTGCTAGGTTTGACTTGTCTCAAAGAATAATGTGGAAAAGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAGTGCTAGGTTTGACTTGTCTCAAAGAATAATGTGGAAAAGTAA  100

seq1  CAGGGCACACTCCGGGACATCAACCGCGGGCCTACACATGGACGAGTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCACACTCCGGGACATCAACCGCGGGCCTACACATGGACGAGTAAT  150

seq1  GAAGGGTGCGGTCTACCATTTCCATACCTACATTTATGTAAATCATGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTGCGGTCTACCATTTCCATACCTACATTTATGTAAATCATGTAT  200

seq1  GCATGCATGCACATTCCAAACATGGGAAAATAATGCTAAAGCTGTCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCATGCACATTCCAAACATGGGAAAATAATGCTAAAGCTGTCAGCA  250

seq1  AAGTGATTTTATTTGCTGTTGTTTTGTTTTAAGACAGAATCTCACGATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATTTTATTTGCTGTTGTTTTGTTTTAAGACAGAATCTCACGATGA  300

seq1  AGCCTCGCTGGGTCAGCCTCAAACTCTTGATCCCCCTGTCTAAGCCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCGCTGGGTCAGCCTCAAACTCTTGATCCCCCTGTCTAAGCCTCTT  350

seq1  AAGTTTGAGCGTGGGGCTTAAGGGAGTGTGCCACATGACCAGCAAGCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGAGCGTGGGGCTTAAGGGAGTGTGCCACATGACCAGCAAGCAGC  400

seq1  ACAGTGTCTCTCTGCAGCCATGATTCCTAGGACGACTTTGCCAACCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTCTCTCTGCAGCCATGATTCCTAGGACGACTTTGCCAACCAGAA  450

seq1  GCCATGAAACACATTACCCGTGACTCAGTTTCCTTGATGACAAAAAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGAAACACATTACCCGTGACTCAGTTTCCTTGATGACAAAAAAGGA  500

seq1  AGGAACTGTAAGACCCACCTCTCAAGAACAAAGAAGGGGTGGTATTTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTGTAAGACCCACCTCTCAAGAACAAAGAAGGGGTGGTATTTTAG  550

seq1  TCACTTCTCTCAGTGCTGTGATAAAAATCCTGAATCAGGCAACTAAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCTCTCAGTGCTGTGATAAAAATCCTGAATCAGGCAACTAAGGAA  600

seq1  GGAAGGGTTTACTTTGGTTTACCATTTGAGGGCACAGCTCACCCCAGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGTTTACTTTGGTTTACCATTTGAGGGCACAGCTCACCCCAGCAA  650

seq1  GGAAGGCGTGGTGTCAGAGCTGTGAAGCAGGTGGTCCTACTGCATCTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCGTGGTGTCAGAGCTGTGAAGCAGGTGGTCCTACTGCATCTGAA  700

seq1  GTCAGGAAGCAGAGCCTGATGAAAGTCTTTGCTTAGCTCAGTTTCTCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAAGCAGAGCCTGATGAAAGTCTTTGCTTAGCTCAGTTTCTCCTC  750

seq1  TTTATTCAGTCTGGAACCTGAGCCCATGGAATGGTACTGCCTACATTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCAGTCTGGAACCTGAGCCCATGGAATGGTACTGCCTACATTTGG  800

seq1  GGTGGATCACCCCACATCAAAGAACCCAAGGTAGACATTCCCTCGAAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATCACCCCACATCAAAGAACCCAAGGTAGACATTCCCTCGAAGAC  850

seq1  AGAGCCAGAGGTTCGTCTTCAACATGATTCCAAAATTGTCTGGTTGGAAA  900
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGAGCCAGAGGTTCGTCTTCAACATGATTCC-AAATTGTCTGGTTGGAAA  899

seq1  TCAATATTAATCCTCACAGAAGGAGGCAACTACTCGGAGGAAACTGTCCA  950
      |||||||| |||||||||||| ||||||||||||||||||||||||||||
seq2  TCAATATTTATCCTCACAGAA-GAGGCAACTACTCGGAGGAAACTGTCCA  948

seq1  CTTCAAATTATATGGCTGCCCACAGGGATGTAGTAGAGTTTAATTGGTAC  1000
      |||||||||||||||||| |||||||||||||||||||||| ||| ||||
seq2  CTTCAAATTATATGGCTG-CCACAGGGATGTAGTAGAGTTT-ATTTGTAC  996

seq1  TTTCTGAATTCTCTTACATTTTTGGTTCTGAACCTAGCCTTTAATGGATG  1050
      |||||||||||||||||| ||||||||||||  |||||||||||| ||||
seq2  TTTCTGAATTCTCTTACA-TTTTGGTTCTGA--CTAGCCTTTAAT-GATG  1042

seq1  AGCCATCTCTCCAGCCTGCTTCCTGAATTCTCAAAGTGATGCTATAGAAT  1100
      ||||||||   ||| |||||| ||||| ||||||||||||||||||||||
seq2  AGCCATCTTCTCAG-CTGCTT-CTGAA-TCTCAAAGTGATGCTATAGAAT  1089

seq1  CTA-TCTCATGGTTATTT  1117
      ||| |||||| | |||||
seq2  CTATTCTCAT-GCTATTT  1106