BAC Information

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BAC

Clone NameB6Ng01-114L01
Chromosome6 (Build37)
Map Location 81,292,729 - 81,293,893
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043390, LOC100042991
Downstream geneLOC232143, 1700009C05Rik, AW146020, Mrpl19, Tmem166, EG622198
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114L01.bB6Ng01-114L01.g
ACCDH920149DH920150
length1,0721,139
definitionDH920149|Mus musculus domesticus DNA, BAC clone: B6Ng01-114L01, 5' end.DH920150|Mus musculus domesticus DNA, BAC clone: B6Ng01-114L01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgctaagctctgagccccattttttaatggggttatttgatt
ttctggagcccaccttcttgagttctttatatatattggatattagtccc
ctatcagatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacagtgtcttttgccttgcaaaacgaagctttgcaac
tttatgaggtcccatttatcaattctcgatcttactgcacaagtcattgc
tgttctattcaggaactttccccccatacccatattttccaggcttttcc
ctaatttctcctctataagtttcagtgtctctggttttatgtggagttcc
ttaatccacttagatttgaccttagtacaaggagataggaatggatcgat
tcgcattcttctacatgataaccaccaggtgtgccagcaccatttgttta
aaatgctatcttttccccactcgatggttttagctcccttgtcaaagatc
aaaggaccataggtgtgtgggttcatctctgggtcttcaattcttttcca
ttggtctacttgtctgtcgatataccagtaccatgcagtttttgtcacaa
ttactctgtagtacagctttaggtctggcatggtgattccaccagaggtt
cttttatccttgagaagagtttttgctatcctaggttttttgttattcca
gatgaatctgccgattgccctttctaattcgttgaagaattgagttggaa
ttttgatggggattgcattgaatctgtagattgcttttggcaagatagcc
attttttactatattgatcctgccgatccatgagcatgggagatctttcc
atcttcctgaggtattctttaatttctttcttcagagacttgaggttctt
ttcattacagatcttttcatttcctaagttaggagtcacaccagggtatt
ttatattatttgtgactattgagaggtgtgtttcctaatttcttcctcag
cctgttattcctttgggtactaaaggacattgattgtttgagtcatttta
tatccagctcctcacttgaagc
gaattcaagaaatgaatttcatagaaaacaaatggttagctgtagaaagg
agatttgttttataattcaacttaagataaagaaaagagcagaagttcta
catatcaagaagaatctcaaggaagattgccactggggacttcatctagg
acttaatgacacttacttggctgagataaggggaagtagattggttagtt
cagatggtccaactacaggtcctcatgaaccatacattcatctttcagtc
ctgctatctggattggagttcctgacacaaagtcaaggaccaatgaagta
attgatctagcagatcttttggtatctataagcatcaggttcgggagtaa
aaagagaagaaaaacaaaaagaagaaaacagaccaggacccggtgtgcat
gaaaattgtagcagttctgccccctggccaggatggagacattgccagaa
ccaagaagtttcttgttctcaagaacaagcagaatctctttccagatcct
ccggtgcaaactgcctggcgagtttagttctcctattcctcttcccaatg
ccattgctaatgttctagtttagatcattgagataaggtcatacagttta
atattagaggaaaggatagcctttgttttaacataagattgatttaaaaa
ttaaaaaaaaatactagagacccaaagactacagaaaaaaaaaattctgt
acttatggcttttaagggttagaaacttggaaacagatatggaacaaaag
gaccttgagaaacttgcattccttacaggccttccagttatgtaaatcta
aagcagagactcacttcagaaaagaagtctgaatggtgtagggataatct
cttctgtactatgtaaagcatcacctatcaataaaaatttgatggtcaat
aagatagcaggattagaaggtgagacatcctgcagagagagagagagaga
aactcaggacatagtcagaggccacccaaacttctgagagtcggacatat
gaaacaagtagaggtactacccacccattgccaaacacagataagaaact
gccttaaataggttagagcctattgtgggcagcttagctagcgagcatta
taataaaagctcctatgcattatacagaacctggcaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_81292729_81293893
seq2: B6Ng01-114L01.g_66_1204

seq1  GAATTCAAGAAATGAATTTCATAGAAAACAAATGGTTAGCTGTAGAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAAATGAATTTCATAGAAAACAAATGGTTAGCTGTAGAAAGG  50

seq1  AGATTTGTTTTATAATTCAACTTAAGATAAAGAAAAGAGCAGAAGTTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGTTTTATAATTCAACTTAAGATAAAGAAAAGAGCAGAAGTTCTA  100

seq1  CATATCAAGAAGAATCTCAAGGAAGATTGCCACTGGGGACTTCATCTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCAAGAAGAATCTCAAGGAAGATTGCCACTGGGGACTTCATCTAGG  150

seq1  ACTTAATGACACTTACTTGGCTGAGATAAGGGGAAGTAGATTGGTTAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATGACACTTACTTGGCTGAGATAAGGGGAAGTAGATTGGTTAGTT  200

seq1  CAGATGGTCCAACTACAGGTCCTCATGAACCATACATTCATCTTTCAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGTCCAACTACAGGTCCTCATGAACCATACATTCATCTTTCAGTC  250

seq1  CTGCTATCTGGATTGGAGTTCCTGACACAAAGTCAAGGACCAATGAAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATCTGGATTGGAGTTCCTGACACAAAGTCAAGGACCAATGAAGTA  300

seq1  ATTGATCTAGCAGATCTTTTGGTATCTATAAGCATCAGGTTCGGGAGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATCTAGCAGATCTTTTGGTATCTATAAGCATCAGGTTCGGGAGTAA  350

seq1  AAAGAGAAGAAAAACAAAAAGAAGAAAACAGACCAGGACCCGGTGTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAGAAAAACAAAAAGAAGAAAACAGACCAGGACCCGGTGTGCAT  400

seq1  GAAAATTGTAGCAGTTCTGCCCCCTGGCCAGGATGGAGACATTGCCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGTAGCAGTTCTGCCCCCTGGCCAGGATGGAGACATTGCCAGAA  450

seq1  CCAAGAAGTTTCTTGTTCTCAAGAACAAGCAGAATCTCTTTCCAGATCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAGTTTCTTGTTCTCAAGAACAAGCAGAATCTCTTTCCAGATCCT  500

seq1  CCGGTGCAAACTGCCTGGCGAGTTTAGTTCTCCTATTCCTCTTCCCAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTGCAAACTGCCTGGCGAGTTTAGTTCTCCTATTCCTCTTCCCAATG  550

seq1  CCATTGCTAATGTTCTAGTTTAGATCATTGAGATAAGGTCATACAGTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGCTAATGTTCTAGTTTAGATCATTGAGATAAGGTCATACAGTTTA  600

seq1  ATATTAGAGGAAAGGATAGCCTTTGTTTTAACATAAGATTGATTTAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGAGGAAAGGATAGCCTTTGTTTTAACATAAGATTGATTTAAAAA  650

seq1  TTAAAAAAAAATACTAGAGACCCAAAGACTACAGAAAAAAAAAATTCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAATACTAGAGACCCAAAGACTACAGAAAAAAAAAATTCTGT  700

seq1  ACTTATGGCTTTTAAGGGTTAGAAACTTGGAAACAGATATGGAACAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGGCTTTTAAGGGTTAGAAACTTGGAAACAGATATGGAACAAAAG  750

seq1  GACCTTGAGAAACTTGCATTCCTTACAGGCCTTCCAGTTATGTAAATCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGAGAAACTTGCATTCCTTACAGGCCTTCCAGTTATGTAAATCTA  800

seq1  AAGCAGAGACTCACTTCAGAAAAGAAGTCTGAATGGTGTAGGGATAATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAGACTCACTTCAGAAAAGAAGTCTGAATGGTGTAGGGATAATCT  850

seq1  CTTCTGTACTATGTAAAAGCATCACCTATCAATAAAAATTTGATGGTCAA  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTTCTGTACTATGT-AAAGCATCACCTATCAATAAAAATTTGATGGTCAA  899

seq1  TAAGATAAGCAGGATTAGAAGGTGAGACATCCTGCAGAGAGAGAGAGAGA  950
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAT-AGCAGGATTAGAAGGTGAGACATCCTGCAGAGAGAGAGAGAGA  948

seq1  GAAACTCAGGGACATAGTCAGAGGCCACCCAAAC-TCTGAGGAAGTCGGA  999
      |||||||| ||||||||||||||||||||||||| ||||||  |||||||
seq2  GAAACTCA-GGACATAGTCAGAGGCCACCCAAACTTCTGAG--AGTCGGA  995

seq1  CATATGAAACAAAGTAGAGGTAACTACCCACCCATTTGCCAAACACAGAA  1049
      |||||||||| |||||||||| |||||||||||| |||||||||||||| 
seq2  CATATGAAAC-AAGTAGAGGT-ACTACCCACCCA-TTGCCAAACACAGAT  1042

seq1  TAGGAAAAACTGCTTAAAATAAGTTAAGAGCTAATTGTGGAGCAAGCCTA  1099
       ||   ||||||| | ||||| ||| |||||  ||||||| || ||| ||
seq2  AAG---AAACTGCCTTAAATAGGTT-AGAGCCTATTGTGG-GC-AGCTTA  1086

seq1  GCTTAAGGCCGAAAGCATTATAAATAAAAAAGGCCTCTATGCCATTATAC  1149
      |||  ||  ||  |||||||| |||||||   ||  ||||| ||||||||
seq2  GCT--AG--CG--AGCATTAT-AATAAAA---GCTCCTATG-CATTATAC  1125

seq1  AGAAACTGGGGCAGGC  1165
      |||| ||  |||||||
seq2  AGAACCT--GGCAGGC  1139