BAC Information

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BAC

Clone NameB6Ng01-114L05
Chromosome6 (Build37)
Map Location 104,040,895 - 104,163,726
singlet/doubletdoublet
Overlap genenone
Upstream geneChl1, LOC666141, LOC100043345
Downstream geneCntn6, LOC384470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114L05.bB6Ng01-114L05.g
ACCDH920155DH920156
length1,1621,243
definitionDH920155|Mus musculus domesticus DNA, BAC clone: B6Ng01-114L05, 5' end.DH920156|Mus musculus domesticus DNA, BAC clone: B6Ng01-114L05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,040,895 - 104,042,100)(104,162,485 - 104,163,726)
sequence
gaattctcctgctccaaaaggcagccagaataaagacttggatatactca
agtaatggaattataaataaatcatttgaaaggggtttctaaaaggaata
aattgaggatggttttgcaataatttcaatgtgcaagtgtgttcagggac
cagtgaaggaaggtgcctgcttatttaaattttttattaaggatttctct
catttaccttactcttgcaattactgttgctctaaaataaaacttagata
aactcactagtctgtctactctaacatgcaaagtttaagcctacaaattc
cagagaaatgtaaatggctttaaataacttattttcatctatactatgat
cacactattttaaaaggatcactatttaaaaactaaggtcactgctataa
ttatgtacaggtttaaacttttatcatctcaactgaactaacagaaatta
actctagcaatgacactttgggcgctttcaatttcattatctaatatgtc
ttcaataggaatgaaatcaacacatcaataatgtatattatagacctgct
aacacgtgcaaaacgtgtccactccttcaattttcaactactagttattg
catttttttttcaagttttgtttccttcctatagaaattacatttgaaat
gccatgaacagtattttcttcctttggtagtctcaaacttccaatcaggt
ttatgctattgaagtttcactttatataattttttaaaattacaaattta
atgtagatggactttaaaataaaaaccaaattgaaagtataaattataaa
tcctaatcgttggaatttccttcattttccctaagtaaaatttaaaaatt
gatatatacatgattattgaagaaaaaaagaggtcatgcttttaagaaag
tagagggatttatgagaagggttagatgaggaaagggaaggcaaaatgta
ttaaattatatctcaagataacattaaaaatatggtatgttgggtaaact
aaatttgaccagaatttgtctcatcccaaccctgattaaagaataaatca
ctgagttactgtatcgagaaaaaccacaactactatgcactttcttactc
taattctttaatatagctgcatcaagggcttttggatccttaccctatct
tctggaaactgg
gaattcctaaattccctgaaatactaaaattaatttttttactaaaacat
tttttctaatttctacaagacaagggttcacttcaacatagtctgtcctg
tgacccgtaacaaacctcctgtttcattctccaaactgttgcagtgattt
acattaattcaaaataaaatctatcaatataaattgaattgacattttaa
gccaaacatttatctgggtaccacatacttcataatcattttgtctattc
acatgccatttcgagaaaaaagaccaatattttacataagaaaataataa
tttttaggagtatattcatcacaatccgtttcatttcagtagataatccc
attgtttgaactaaaaaatataatataaaaataatgttcaattcattgta
gaatataatctgtaaaacaattaagaatttttttttaggtatctctggta
tttaaaaatcattatgagtctgaagaaatgtctcagcagttaagagcact
ggttgctttttcagaggatccagattcaattcttagcacttacatggaag
ttcacaatcgtctctaatttatgttccatgggatccaatttccatttctc
accttcagtgggatcaggcacacatgaggtatagagacatgtgtgcagac
atttgcagacagacatacatattcaatttaaagaaataacaatcattata
atcattctttaaaacatatagttattaaaagcttcttaggcgcaaagtat
tattaggaagcttattgatattttgaatatgcagtttgcagcaataactc
aacaatgtcttatggttgagatgatctctgtaacttctcttgtccatact
actttgttatatttttaataatttttattgaacttgttctttgataaaga
tgaataagtgcagtcagattactgaaacccatcaaccccactcacctacc
ttctccacactcctttccttttggttttgcatttgcttgcttttgagacc
tgatgcgtttagccaggattgtttgtctgagcttagaagttattcactgg
aaacctggcgcattcattcttcattggatataacactgggagaaaaaatt
cttttcttttacttccgcattcaatcagtaccaaggtacagccaagagag
ggattgtccaagaatctccctcagattcatggatgagttaacagcctgtt
tattggaacatcagttaggcagtcacactatcagtgaaatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_104040895_104042100
seq2: B6Ng01-114L05.b_44_1205

seq1  GAATTCTCCTGCTCCAAAAGGCAGCCAGAATAAAGACTTGGATATACTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGCTCCAAAAGGCAGCCAGAATAAAGACTTGGATATACTCA  50

seq1  AGTAATGGAATTATAAATAAATCATTTGAAAGGGGTTTCTAAAAGGAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGGAATTATAAATAAATCATTTGAAAGGGGTTTCTAAAAGGAATA  100

seq1  AATTGAGGATGGTTTTGCAATAATTTCAATGTGCAAGTGTGTTCAGGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGGATGGTTTTGCAATAATTTCAATGTGCAAGTGTGTTCAGGGAC  150

seq1  CAGTGAAGGAAGGTGCCTGCTTATTTAAATTTTTTATTAAGGATTTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAGGAAGGTGCCTGCTTATTTAAATTTTTTATTAAGGATTTCTCT  200

seq1  CATTTACCTTACTCTTGCAATTACTGTTGCTCTAAAATAAAACTTAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACCTTACTCTTGCAATTACTGTTGCTCTAAAATAAAACTTAGATA  250

seq1  AACTCACTAGTCTGTCTACTCTAACATGCAAAGTTTAAGCCTACAAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACTAGTCTGTCTACTCTAACATGCAAAGTTTAAGCCTACAAATTC  300

seq1  CAGAGAAATGTAAATGGCTTTAAATAACTTATTTTCATCTATACTATGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAATGTAAATGGCTTTAAATAACTTATTTTCATCTATACTATGAT  350

seq1  CACACTATTTTAAAAGGATCACTATTTAAAAACTAAGGTCACTGCTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTATTTTAAAAGGATCACTATTTAAAAACTAAGGTCACTGCTATAA  400

seq1  TTATGTACAGGTTTAAACTTTTATCATCTCAACTGAACTAACAGAAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTACAGGTTTAAACTTTTATCATCTCAACTGAACTAACAGAAATTA  450

seq1  ACTCTAGCAATGACACTTTGGGCGCTTTCAATTTCATTATCTAATATGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGCAATGACACTTTGGGCGCTTTCAATTTCATTATCTAATATGTC  500

seq1  TTCAATAGGAATGAAATCAACACATCAATAATGTATATTATAGACCTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAGGAATGAAATCAACACATCAATAATGTATATTATAGACCTGCT  550

seq1  AACACGTGCAAAACGTGTCCACTCCTTCAATTTTCAACTACTAGTTATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACGTGCAAAACGTGTCCACTCCTTCAATTTTCAACTACTAGTTATTG  600

seq1  CATTTTTTTTTCAAGTTTTGTTTCCTTCCTATAGAAATTACATTTGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTTTTCAAGTTTTGTTTCCTTCCTATAGAAATTACATTTGAAAT  650

seq1  GCCATGAACAGTATTTTCTTCCTTTGGTAGTCTCAAACTTCCAATCAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGAACAGTATTTTCTTCCTTTGGTAGTCTCAAACTTCCAATCAGGT  700

seq1  TTATGCTATTGAAGTTTCACTTTATATAATTTTTTAAAATTACAAATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTATTGAAGTTTCACTTTATATAATTTTTTAAAATTACAAATTTA  750

seq1  ATGTAGATGGACTTTAAAATAAAAACCAAATTGAAAGTATAAATTATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGATGGACTTTAAAATAAAAACCAAATTGAAAGTATAAATTATAAA  800

seq1  TCCTAATCGTTGGAATTTCCTTCATTTTCCCTAAGTAAAAATTTAAAAAT  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCCTAATCGTTGGAATTTCCTTCATTTTCCCTAAGT-AAAATTTAAAAAT  849

seq1  TGATATATACATGATTATTGAAGAAAAAAAAGAGGTCATGCTTTTTAAGA  900
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  TGATATATACATGATTATTGAAG-AAAAAAAGAGGTCATGC-TTTTAAGA  897

seq1  AAGTTAGGAGGGATTTATGAGAAGGGTTAGAATGAGGAAAGGGAAGGGCA  950
      ||||   ||||||||||||||||||||||| |||||||||||||| ||||
seq2  AAGT--AGAGGGATTTATGAGAAGGGTTAG-ATGAGGAAAGGGAA-GGCA  943

seq1  AAATGTAATTAAATTATAATCTCAAGAATAAACATTAAAAAATATGGTAT  1000
      |||||| |||||||||| |||||||||   |||||| |||||||||||| 
seq2  AAATGT-ATTAAATTAT-ATCTCAAGA--TAACATT-AAAAATATGGTA-  987

seq1  TGTTGGGTTAAACTAAATTTGACCCAGAAATTTTGTCCTCCATTCCCCCA  1050
      ||||||| |||||||||||||| ||||||  ||||||   |||   ||||
seq2  TGTTGGG-TAAACTAAATTTGA-CCAGAA--TTTGTC--TCAT---CCCA  1028

seq1  ACCCTGATTATAGACATTAAATTCACTTGGAGTCTACTGTTATCAGAGAA  1100
      |||||||||| ||| ||  || |||||  |||| ||||| |||| |||||
seq2  ACCCTGATTAAAGA-AT--AAATCACT--GAGT-TACTG-TATC-GAGAA  1070

seq1  AAACACAACCATATCTACATATGCAACTTTCTTACCTCAATTCCTTTATA  1150
      |     ||||| | |||| ||||| ||||||||||   ||||| || |||
seq2  A-----AACCACAACTAC-TATGC-ACTTTCTTACTCTAATTCTTTAATA  1113

seq1  TAAGCCTGCATCAAAGGGCTTTTGAGATCTTAACCTCTATCCTTCTGGAA  1200
      ||   ||||||| ||||||||||| |||| | ||| |||| |||||||||
seq2  TA--GCTGCATC-AAGGGCTTTTG-GATCCTTACC-CTAT-CTTCTGGAA  1157

seq1  GACTGG  1206
       |||||
seq2  -ACTGG  1162

seq1: chr6_104162485_104163726
seq2: B6Ng01-114L05.g_68_1310 (reverse)

seq1  CACAATTCACTG-TA--GTGACTGCCTACCCTGGTGCTGCATATAACCAG  47
      |||| ||||||| ||  |||||||||||  ||| || | || |||| |||
seq2  CACATTTCACTGATAGTGTGACTGCCTA-ACTGATGTTCCA-ATAAACAG  48

seq1  ACCTGTTAACACTTCATCATGGATCTGAGGGAGATTCTTGGGACAATACC  97
        |||||||| | ||  |||| ||||||||||||||||| ||||||| ||
seq2  -GCTGTTAACTCATC--CATGAATCTGAGGGAGATTCTT-GGACAATCCC  94

seq1  TCTCCTTGCTGTAACATTGGTTACTGATGGATTGCGG-AGT-AAAGAAA-  144
      |||| | ||||| || |||| ||||||| || ||||| ||| ||||||| 
seq2  TCTCTTGGCTGT-ACCTTGG-TACTGATTGAATGCGGAAGTAAAAGAAAA  142

seq1  -GATATTGTCT-CCAGTTGTATATCCAATGAAGAATGAATGCGCCAGG-T  191
        || || ||| |||||  ||||||||||||||||||||||||||||| |
seq2  GAATTTTTTCTCCCAGTGTTATATCCAATGAAGAATGAATGCGCCAGGTT  192

seq1  TCCAGTGAATAAC-TCTAAGCTCAGACAAACAATCCTGGCTAAACGCATC  240
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGAATAACTTCTAAGCTCAGACAAACAATCCTGGCTAAACGCATC  242

seq1  AGGTCTCAAAAAGCAAGCAAATGCAAAACCAAAAGGAAAGGAGTGTGGAG  290
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTC-AAAAGCAAGCAAATGCAAAACCAAAAGGAAAGGAGTGTGGAG  291

seq1  AAGGTAGGTGAGTGGGGTTGATGGGTTTCAGTAATCTGACTGCACTTATT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGGTGAGTGGGGTTGATGGGTTTCAGTAATCTGACTGCACTTATT  341

seq1  CATCTTTATCAAAGAACAAGTTCAATAAAAATTATTAAAAATATAACAAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTATCAAAGAACAAGTTCAATAAAAATTATTAAAAATATAACAAA  391

seq1  GTAGTATGGACAAGAGAAGTTACAGAGATCATCTCAACCATAAGACATTG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTATGGACAAGAGAAGTTACAGAGATCATCTCAACCATAAGACATTG  441

seq1  TTGAGTTATTGCTGCAAACTGCATATTCAAAATATCAATAAGCTTCCTAA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTATTGCTGCAAACTGCATATTCAAAATATCAATAAGCTTCCTAA  491

seq1  TAATACTTTGCGCCTAAGAAGCTTTTAATAACTATATGTTTTAAAGAATG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTTTGCGCCTAAGAAGCTTTTAATAACTATATGTTTTAAAGAATG  541

seq1  ATTATAATGATTGTTATTTCTTTAAATTGAATATGTATGTCTGTCTGCAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAATGATTGTTATTTCTTTAAATTGAATATGTATGTCTGTCTGCAA  591

seq1  ATGTCTGCACACATGTCTCTATACCTCATGTGTGCCTGATCCCACTGAAG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGCACACATGTCTCTATACCTCATGTGTGCCTGATCCCACTGAAG  641

seq1  GTGAGAAATGGAAATTGGATCCCATGGAACATAAATTAGAGACGATTGTG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAATGGAAATTGGATCCCATGGAACATAAATTAGAGACGATTGTG  691

seq1  AACTTCCATGTAAGTGCTAAGAATTGAATCTGGATCCTCTGAAAAAGCAA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCATGTAAGTGCTAAGAATTGAATCTGGATCCTCTGAAAAAGCAA  741

seq1  CCAGTGCTCTTAACTGCTGAGACATTTCTTCAGACTCATAATGATTTTTA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCTCTTAACTGCTGAGACATTTCTTCAGACTCATAATGATTTTTA  791

seq1  AATACCAGAGATACCTAAAAAAAAATTCTTAATTGTTTTACAGATTATAT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAGAGATACCTAAAAAAAAATTCTTAATTGTTTTACAGATTATAT  841

seq1  TCTACAATGAATTGAACATTATTTTTATATTATATTTTTTAGTTCAAACA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAATGAATTGAACATTATTTTTATATTATATTTTTTAGTTCAAACA  891

seq1  ATGGGATTATCTACTGAAATGAAACGGATTGTGATGAATATACTCCTAAA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATTATCTACTGAAATGAAACGGATTGTGATGAATATACTCCTAAA  941

seq1  AATTATTATTTTCTTATGTAAAATATTGGTCTTTTTTCTCGAAATGGCAT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTATTTTCTTATGTAAAATATTGGTCTTTTTTCTCGAAATGGCAT  991

seq1  GTGAATAGACAAAATGATTATGAAGTATGTGGTACCCAGATAAATGTTTG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATAGACAAAATGATTATGAAGTATGTGGTACCCAGATAAATGTTTG  1041

seq1  GCTTAAAATGTCAATTCAATTTATATTGATAGATTTTATTTTGAATTAAT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAAATGTCAATTCAATTTATATTGATAGATTTTATTTTGAATTAAT  1091

seq1  GTAAATCACTGCAACAGTTTGGAGAATGAAACAGGAGGTTTGTTACGGGT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATCACTGCAACAGTTTGGAGAATGAAACAGGAGGTTTGTTACGGGT  1141

seq1  CACAGGACAGACTATGTTGAAGTGAACCCTTGTCTTGTAGAAATTAGAAA  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGACAGACTATGTTGAAGTGAACCCTTGTCTTGTAGAAATTAGAAA  1191

seq1  AAATGTTTTAGTAAAAAAATTAATTTTAGTATTTCAGGGAATTTAGGAAT  1240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTTAGTAAAAAAATTAATTTTAGTATTTCAGGGAATTTAGGAAT  1241

seq1  TC  1242
      ||
seq2  TC  1243