BAC Information

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BAC

Clone NameB6Ng01-115A15
Chromosome6 (Build37)3 (Build37)
Map Location 54,981,358 - 54,981,47387,499,504 - 87,500,618
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2, Nod1, A030007L17Rik
Downstream geneGars, Crhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115A15.bB6Ng01-115A15.g
ACCDH920406DH920407
length1151,111
definitionDH920406|Mus musculus domesticus DNA, BAC clone: B6Ng01-115A15, 5' end.DH920407|Mus musculus domesticus DNA, BAC clone: B6Ng01-115A15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(54,981,358 - 54,981,473)(87,499,504 - 87,500,618)
sequence
gaattcaccaacttgcttctaatatgcaatgcagcctatactgaagattt
ctatctcagtgggattccctggctctattatggtattcccttgtttgggt
gagatttgctactgt
gaattcacatcacacagacagcagcagcggcagcagccacacacacatgc
acaaagcatggtgccaggggcatgcttcagttctggaagcatgcaacacc
ctactaggtagagtctgttgtgtcttcctctataagtaagaaaacaaaga
gagggctcttagtggttaggttgcttagccatgaggggaaagttgaaagt
tgaggggaactagagctgggaatcaaagctagatggcctgtgcccataac
ctaagccatccacatgtgcggacactccctcagaaagtacgtttgtaaag
tttatctgcctgtgctttcaccaacttctaagcaggacatttaaaaaaga
acataaaatgtcttaaagttttaaaaagttatttttgcttttgtgtttat
tggtgtttttgcatgcactcatgcatgtattacaccatgtatgcgcagca
tccatggaggccagaggagggatgggattccctggaacggaagttacaga
cagttgtgagctaccgtgtgggtgctgggaaatgaacctgtgtcccctag
aagagcagtcagtgctcgcaactgctgaccagctctacctcaaacaacct
gtatggctttgggaaaagtctcttcttaggcagtacagtttcctaaggtt
agttcttactcacccaaagaactgaggctggatagctataagcaaggcac
tcagagtaaagtccctgacgaggagaacaaccaaccgcctcctgtgtggc
attttctagaaagtgcatctagatctgtagctacttactgagatgctttt
ctgaggataatgaagggaggaacgtatgttcctctgaggagattgtcaga
gaaaaagctaccagatgaatggtgagtgacaccagagtggaaatacacat
cttgaggaaagtattcagaaggaagagtaattagcaaactgaagcagaca
ctcttaattagttttttcatatttgcttttcacaaggagggccatgagca
gctttgatattcctggtgcatcttcacagtctccgggtaggtattgcaat
agggatcacttagtctttgtggtggctagtctgccatgtccagaggcttt
cctgcccactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_54981358_54981473
seq2: B6Ng01-115A15.b_46_160 (reverse)

seq1  ACAGTAGCAAATCTCACCCAAACAAGGGAATACCATAAAAAGAGCTAGGG  50
      |||||||||||||||||||||||||||||||||||| || ||||| ||||
seq2  ACAGTAGCAAATCTCACCCAAACAAGGGAATACCAT-AATAGAGCCAGGG  49

seq1  AATCCCACTGAGATAGAAATCTTCAGTACAGGCTGCATTGCATATTAGAA  100
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AATCCCACTGAGATAGAAATCTTCAGTATAGGCTGCATTGCATATTAGAA  99

seq1  GCAAGTTGGTGAATTC  116
      ||||||||||||||||
seq2  GCAAGTTGGTGAATTC  115

seq1: chr3_87499504_87500618
seq2: B6Ng01-115A15.g_68_1178 (reverse)

seq1  GAGTGGGGCAGAAAGCCTCTTGGGCCATGGCAGGACTAG-CACCACAGAG  49
      |||||||   ||||||||||  || ||||||| |||||| ||||||| ||
seq2  GAGTGGGCAGGAAAGCCTCT--GGACATGGCA-GACTAGCCACCACAAAG  47

seq1  GCTGAGTGATCCCTATTGCAATACCTACCCGGGAGACTGTGGAGATACCA  99
       || |||||||||||||||||||||||||| |||||||||| |||| |  
seq2  ACTAAGTGATCCCTATTGCAATACCTACCC-GGAGACTGTGAAGATGCAC  96

seq1  CAGG-ATATCAAAGCCTGCTTCAT-GCCCTCCTTGTGAAAAGCAAATATG  147
      |||| ||||||||| |||| |||| |||||||||||||||||||||||||
seq2  CAGGAATATCAAAG-CTGC-TCATGGCCCTCCTTGTGAAAAGCAAATATG  144

seq1  AAAAAACTAAATTAGAGTGTCTGCTTCAGTTTGCTAATTACTCTTCCCTT  197
      |||||||||| | |||||||||||||||||||||||||||||||| ||||
seq2  AAAAAACTAATTAAGAGTGTCTGCTTCAGTTTGCTAATTACTCTT-CCTT  193

seq1  CTGAATACTTTCCTCAAGATGTGTATTTCCACTCTGGTGTCACTCACCAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATACTTTCCTCAAGATGTGTATTTCCACTCTGGTGTCACTCACCAT  243

seq1  TCATCTGGTAGCTTTTTCTCTGACAATCTCCTCAGAGGAACATACGTTCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGGTAGCTTTTTCTCTGACAATCTCCTCAGAGGAACATACGTTCC  293

seq1  TCCCTTCATTATCCTCAGAAAAGCATCTCAGTAAGTAGCTACAGATCTAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCATTATCCTCAGAAAAGCATCTCAGTAAGTAGCTACAGATCTAG  343

seq1  ATGCACTTTCTAGAAAATGCCACACAGGAGGCGGTTGGTTGTTCTCCTCG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTTTCTAGAAAATGCCACACAGGAGGCGGTTGGTTGTTCTCCTCG  393

seq1  TCAGGGACTTTACTCTGAGTGCCTTGCTTATAGCTATCCAGCCTCAGTTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGACTTTACTCTGAGTGCCTTGCTTATAGCTATCCAGCCTCAGTTC  443

seq1  TTTGGGTGAGTAAGAACTAACCTTAGGAAACTGTACTGCCTAAGAAGAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTGAGTAAGAACTAACCTTAGGAAACTGTACTGCCTAAGAAGAGA  493

seq1  CTTTTCCCAAAGCCATACAGGTTGTTTGAGGTAGAGCTGGTCAGCAGTTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCCAAAGCCATACAGGTTGTTTGAGGTAGAGCTGGTCAGCAGTTG  543

seq1  CGAGCACTGACTGCTCTTCTAGGGGACACAGGTTCATTTCCCAGCACCCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCACTGACTGCTCTTCTAGGGGACACAGGTTCATTTCCCAGCACCCA  593

seq1  CACGGTAGCTCACAACTGTCTGTAACTTCCGTTCCAGGGAATCCCATCCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTAGCTCACAACTGTCTGTAACTTCCGTTCCAGGGAATCCCATCCC  643

seq1  TCCTCTGGCCTCCATGGATGCTGCGCATACATGGTGTAATACATGCATGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGGCCTCCATGGATGCTGCGCATACATGGTGTAATACATGCATGA  693

seq1  GTGCATGCAAAAACACCAATAAACACAAAAGCAAAAATAACTTTTTAAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGCAAAAACACCAATAAACACAAAAGCAAAAATAACTTTTTAAAA  743

seq1  CTTTAAGACATTTTATGTTCTTTTTTAAATGTCCTGCTTAGAAGTTGGTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGACATTTTATGTTCTTTTTTAAATGTCCTGCTTAGAAGTTGGTG  793

seq1  AAAGCACAGGCAGATAAACTTTACAAACGTACTTTCTGAGGGAGTGTCCG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACAGGCAGATAAACTTTACAAACGTACTTTCTGAGGGAGTGTCCG  843

seq1  CACATGTGGATGGCTTAGGTTATGGGCACAGGCCATCTAGCTTTGATTCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTGGATGGCTTAGGTTATGGGCACAGGCCATCTAGCTTTGATTCC  893

seq1  CAGCTCTAGTTCCCCTCAACTTTCAACTTTCCCCTCATGGCTAAGCAACC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTAGTTCCCCTCAACTTTCAACTTTCCCCTCATGGCTAAGCAACC  943

seq1  TAACCACTAAGAGCCCTCTCTTTGTTTTCTTACTTATAGAGGAAGACACA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACTAAGAGCCCTCTCTTTGTTTTCTTACTTATAGAGGAAGACACA  993

seq1  ACAGACTCTACCTAGTAGGGTGTTGCATGCTTCCAGAACTGAAGCATGCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTCTACCTAGTAGGGTGTTGCATGCTTCCAGAACTGAAGCATGCC  1043

seq1  CCTGGCACCATGCTTTGTGCATGTGTGTGTGGCTGCTGCCGCTGCTGCTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCACCATGCTTTGTGCATGTGTGTGTGGCTGCTGCCGCTGCTGCTG  1093

seq1  TCTGTGTGATGTGAATTC  1115
      ||||||||||||||||||
seq2  TCTGTGTGATGTGAATTC  1111