BAC Information

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BAC

Clone NameB6Ng01-115C21
Chromosome6 (Build37)
Map Location 116,627,252 - 116,628,354
singlet/doubletsinglet
Overlap genenone
Upstream geneD830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik
Downstream geneC230095G01Rik, LOC100043439, Cxcl12, LOC213422, EG640142, LOC100043777, LOC621462
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115C21.bB6Ng01-115C21.g
ACCDH920512DH920513
length1,2071,096
definitionDH920512|Mus musculus domesticus DNA, BAC clone: B6Ng01-115C21, 5' end.DH920513|Mus musculus domesticus DNA, BAC clone: B6Ng01-115C21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgcccaccttccttcttcatgtgtcagctggtccagcttgag
tttgcatatgccttgtgcacactgtatgaattcatatgtacagctgcctt
gcactatatttctaatcactcacaacttctgattcttacattctttgcat
cccttgttctgcaatgattcctgggcatttggagaagaagatctgataca
cacacacacacacacacacacacacacacacacacacacacacacacaca
tacatatgtatatgtatatgcttcatttagggctgagcatttttcagtct
cttacaccttgaccagtcatgagtctgtgataatcaccatctactgcaaa
tagaagtttcttagatgaagggtgtgagatccattaatctgcagatgtaa
caataagtcattagcactcaactttgtactatgtttagaagaagatagta
gtagattttcctctagggccaatgatctatctagccatggttcttagtct
gatagttgggtcagatatgggcttcagcttctgtagcaagacttaatcag
aaagcatagggcgcagagttcatgccatggctgcagcagtgggtgtgtgt
tcccaggccagtcactagtagagctctcagggttcatagctggtgattgc
ttttcttctccaggagcaggcatcgcaccttccagcactgataaaagcag
cgcccagtgaggagcttgcggctcagcactggcttgcgatgctcgtggtc
tacaactcaagtctaatgtgtcaccacacacatatcattagcaatagggt
ctcactgcccagttctggagggtcaccacaaccctggcagttgcctgtca
tgattaaggttctgtgggatcttactggcaaagtttccaaaagaggtaac
ttattcctggcattggaatttttatttgttagtataggcacttgatgctg
ctctgtctctgtctctgtatctctgtctgtctctgtctctctgtctctct
ctctcactctctctctctcactctcacaaacaacacaagacaacattttc
agtaagtaaggaattcatatgacgtttttttagaaatctttatggtaatg
tatctctggattcacctcttcagaccaacatcccccaccccatcctcgtc
tggtaacttaaggctatgactccagttttctccttattcacagaggatat
gctccag
gaattcatctcagtgacagcagaaagtggcttcatgttggtccacatttt
tatttcttctacaaaccactgggttcagggaggagccacagcaaatagtt
ccggggcaggaaggattacaggaggacactgctcttcacagaatcatcag
aggagattgtccagttcccccacaaagagcctggggttgcctgggagccc
tagttctgagaatggggagtctcaaccaaagagacacaggaaccaggatc
ttccctcaagccaggatgtgaagccggcaaaggaagccgagacctcccag
agggagagacaaggaccctcagggaatacagatcactctcccgcacacac
aagggccatctgtccagctctgggtgcctcttaacaacagagaatcccgg
ggaagtcaccaaaattaaggggcttctaaggaatgcgaaacattcctagg
gccagggccaggctggcctccagcctgtgaccttgacgtgaagaaataaa
agatgcttcagtcgagtcgacctcccctcactgacgctaaagcccaccct
ccaagttgccactgggtcgccaaagacttgtgtgttgggggaaggtagag
ccatagacttgctggattgtgatgctttctctgcattttggaatgggtgc
tggctttacaactcagaaggtctctctcagcaacaaaggataaacattgt
ggtttcagctgggagagcagaatgaccggtagttcattagtattcaccag
agcaatagtacagataagacatgtgtacagccagtggtcggtgtcctcca
catctgaccaactggagctcaaacataagcaggaaaaggattgcaactgt
actaacattgtagtatttccaattattagtctctatgctttacagtgaga
atcacttatactgcgttcacattgttttatggaatgagatcatcagtgta
cggaagcatacggtgacttacatggaaataccacaccatttcgttaaggt
cttgggtatcagcatctttggtaacacagtagactgaaaccagtgcccaa
gaaagggctcaagagattatgagttgaatgaaggtctgtttaggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_116627252_116628354
seq2: B6Ng01-115C21.g_63_1158

seq1  GAATTCATCTCAGTGACAGCAGAAAGTGGCTTCATGTTGGTCCACATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCAGTGACAGCAGAAAGTGGCTTCATGTTGGTCCACATTTT  50

seq1  TATTTCTTCTACAAACCACTGGGTTCAGGGAGGAGCCACAGCAAATAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTCTACAAACCACTGGGTTCAGGGAGGAGCCACAGCAAATAGTT  100

seq1  CCGGGGCAGGAAGGATTACAGGAGGACACTGCTCTTCACAGAATCATCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGGCAGGAAGGATTACAGGAGGACACTGCTCTTCACAGAATCATCAG  150

seq1  AGGAGATTGTCCAGTTCCCCCACAAAGAGCCTGGGGTTGCCTGGGAGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATTGTCCAGTTCCCCCACAAAGAGCCTGGGGTTGCCTGGGAGCCC  200

seq1  TAGTTCTGAGAATGGGGAGTCTCAACCAAAGAGACACAGGAACCAGGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTGAGAATGGGGAGTCTCAACCAAAGAGACACAGGAACCAGGATC  250

seq1  TTCCCTCAAGCCAGGATGTGAAGCCGGCAAAGGAAGCCGAGACCTCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCAAGCCAGGATGTGAAGCCGGCAAAGGAAGCCGAGACCTCCCAG  300

seq1  AGGGAGAGACAAGGACCCTCAGGGAATACAGATCACTCTCCCGCACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGACAAGGACCCTCAGGGAATACAGATCACTCTCCCGCACACAC  350

seq1  AAGGGCCATCTGTCCAGCTCTGGGTGCCTCTTAACAACAGAGAATCCCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCCATCTGTCCAGCTCTGGGTGCCTCTTAACAACAGAGAATCCCGG  400

seq1  GGAAGTCACCAAAATTAAGGGGCTTCTAAGGAATGCGAAACATTCCTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCACCAAAATTAAGGGGCTTCTAAGGAATGCGAAACATTCCTAGG  450

seq1  GCCAGGGCCAGGCTGGCCTCCAGCCTGTGACCTTGACGTGAAGAAATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGCCAGGCTGGCCTCCAGCCTGTGACCTTGACGTGAAGAAATAAA  500

seq1  AGATGCTTCAGTCGAGTCGACCTCCCCTCACTGACGCTAAAGCCCACCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTTCAGTCGAGTCGACCTCCCCTCACTGACGCTAAAGCCCACCCT  550

seq1  CCAAGTTGCCACTGGGTCGCCAAAGACTTGTGTGTTGGGGGAAGGTAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTGCCACTGGGTCGCCAAAGACTTGTGTGTTGGGGGAAGGTAGAG  600

seq1  CCATAGACTTGCTGGATTGTGATGCTTTCTCTGCATTTTGGAATGGGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGACTTGCTGGATTGTGATGCTTTCTCTGCATTTTGGAATGGGTGC  650

seq1  TGGCTTTACAACTCAGAAGGTCTCTCTCAGCAACAAAGGATAAACATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTACAACTCAGAAGGTCTCTCTCAGCAACAAAGGATAAACATTGT  700

seq1  GGTTTCAGCTGGGAGAGCAGAATGACCGGTAGTTCATTAGTATTCACCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCAGCTGGGAGAGCAGAATGACCGGTAGTTCATTAGTATTCACCAG  750

seq1  AGCAATAGTACAGATAAGACATGTGTACAGCCAGTGGTCGGTGTCCTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAGTACAGATAAGACATGTGTACAGCCAGTGGTCGGTGTCCTCCA  800

seq1  CATCTGACCAACTGGAGCTCAAACATAAGCAGGAAAAGGATTGCAACTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGACCAACTGGAGCTCAAACATAAGCAGGAAAAGGATTGCAACTGT  850

seq1  ACTAACATTGTAGTATTTCCAATTATTAGTCTCTATGCTTTACAGTGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACATTGTAGTATTTCCAATTATTAGTCTCTATGCTTTACAGTGAGA  900

seq1  ATCACTTATACTGCGTTCACATTGTTTTATGGAATGAGATCAATCAGTGT  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATCACTTATACTGCGTTCACATTGTTTTATGGAATGAGATC-ATCAGTGT  949

seq1  ACGGAAGCATACGGGTGACTTACATGGAAATACCACACCATTTCGTTAAG  1000
      |||||||||||| |||||||||||||||||||||||||||||||||||| 
seq2  ACGGAAGCATAC-GGTGACTTACATGGAAATACCACACCATTTCGTTAA-  997

seq1  GGTCTTGGGTATCAGCATCTTTGGGTAAACACAGTAGACTGAAACCAGTG  1050
      ||||||||||||||||||||||||   |||||||||||||||||||||| 
seq2  GGTCTTGGGTATCAGCATCTTTGG--TAACACAGTAGACTGAAACCAGT-  1044

seq1  GCCCAAGAAAGTGGCTCAGGAGATTATGAGTTGAATGGAAAGTCTG-TTA  1099
      ||||||||||| |||||| ||||||||||||||||| ||| ||||| |||
seq2  GCCCAAGAAAG-GGCTCAAGAGATTATGAGTTGAAT-GAAGGTCTGTTTA  1092

seq1  GGTA  1103
      ||||
seq2  GGTA  1096