BAC Information

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BAC

Clone NameB6Ng01-115D13
Chromosome6 (Build37)
Map Location 62,935,306 - 63,055,398
singlet/doubletdoublet
Overlap genenone
Upstream geneC130092O11Rik, GA_x5J8B7W6GG0-4757855-4757501
Downstream geneLOC667099, Grid2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115D13.bB6Ng01-115D13.g
ACCDH920542DH920543
length1,0561,115
definitionDH920542|Mus musculus domesticus DNA, BAC clone: B6Ng01-115D13, 5' end.DH920543|Mus musculus domesticus DNA, BAC clone: B6Ng01-115D13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,935,306 - 62,936,324)(63,054,273 - 63,055,398)
sequence
gaattcctctatgatggctagttttcactgcctcgggaggtactatgtag
acagttgatggagaaataacatctgtagtagcaccatttgtgaaccctat
aaactgtaagaacaaacacacctagcaatatgttcccacttgttcaactg
tggtacaacttttgaagggatagtgcactgctctttggccagatttgcat
cccctactgcaaacttagtcaaatactttgctgaaataatagtaggccat
tgggggaagaaggagcctgaatccttttattcagcgcaattgacctagca
acaaggttccttctatatatttatgttataagcaggaaccagtgttacta
ctctcagccttaaattaaagaagcctctctgtccagtgaataatggtaaa
agcagactcatggctctataaagtgctgagaataagtggtagatgaatgt
tcagtcctcgaggctatggtagcatcattcccttcaacggcccagggaac
atttcagagcaggaagatgataggtattagggggagggagttaagagact
gtagagaggattagactaaactatacgcatgtgtggaattgtcaaaacac
aaaaatatatgcaatatttaaaaataaaataataaaacaaagctgtgagg
tcgaaagaaaactcatacacatatgcctcagagcaagagctgtaacacaa
accacaactttgtgagagaaccctgaaaccatacctaaagaatttctcac
cagggatttctgtccaataactattttttcagcctcaggctgtgctaccc
ttagtattgatcgctcagtagtcttgcaattaatcttcttggccaagtat
ggttgtttcaaaataaaataacatgttatcttccttttttttttgcattt
tcatttttcctgttactcattggattttagatccagccaaggttttctga
ttgtatgtaaaggatgacaaattgaatacatttttctccttattattaat
tcctttaactaatattataacagtatttgcaattctgatcacaggatgct
tatact
gaattccagggccaggatgcaggagtgggtgagttggggagcagggggca
gacaggggatttggggaggggaatctaggaaaggggataacattcaaaat
gtagataatgaaaatatcttttaaaaagtatatttttaaatcacatttag
tgttggtactatgtggctaagtagtctattaacactaatataaaagttat
taatttaatttgacatggaaagaaatcagatcattataggatataaatgt
aaatttaattctttgtatgtaattttcatctcagaggcatattgttgaat
acgttcaacgtttcttgttctttctgaagtctggcaaagtggctaaacta
agctgttctagctcaaatgcctttctaggctaactgactcagactagttt
cttttggcttttggctgaattgatttgcttggccttaaactaactattgt
aatctgttttaataatcaggtgtcttctttttctttggctaataaatcct
ctcttctctctctctctctctctctctccctctctgtctctctctctctc
ttctctcttctctcttctctctcctctctctccctccccctcctcctctc
ccttacctcctctctctcagttgctgctgtttcacaaagtcacctctctt
cctctgctgttcttataagaattgagtatattctatctctaacacattct
gacaaatctttctttgacttatcactttgtccctcaattagatgtcattt
tgggattaaatgtgtgactaagacccttagtctgtattccagccagaaag
tagtaaaagtatgtgtcatatctgtactccatctgggatccaacagacct
agaaagtttttggatgtgatttctttgctgaagcagagatactgctgaat
taaaattttactacataatagatgcattataatatgtctatttggagaat
acaaatactttttgaagtaaagatatctagtagacttgctgttaataaaa
tgcagaaaccttatagctggtttcacataaagtcagtctcactgattgga
gctctctttgcactgacctcctctaaaaaacccaaattttcttttgtttt
tatggcaattctgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_62935306_62936324
seq2: B6Ng01-115D13.b_88_1103

seq1  TACTATGTAGACAGTTGATGGAGAAATAACATCTGTAGTAGCACCATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGTAGACAGTTGATGGAGAAATAACATCTGTAGTAGCACCATTTG  50

seq1  TGAACCCTATAAACTGTAAGAACAAACACACCTAGCAATATGTTCCCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCCTATAAACTGTAAGAACAAACACACCTAGCAATATGTTCCCACT  100

seq1  TGTTCAACTGTGGTACAACTTTTGAAGGGATAGTGCACTGCTCTTTGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAACTGTGGTACAACTTTTGAAGGGATAGTGCACTGCTCTTTGGCC  150

seq1  AGATTTGCATCCCCTACTGCAAACTTAGTCAAATACTTTGCTGAAATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGCATCCCCTACTGCAAACTTAGTCAAATACTTTGCTGAAATAAT  200

seq1  AGTAGGCCATTGGGGGAAGAAGGAGCCTGAATCCTTTTATTCAGCGCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGCCATTGGGGGAAGAAGGAGCCTGAATCCTTTTATTCAGCGCAAT  250

seq1  TGACCTAGCAACAAGGTTCCTTCTATATATTTATGTTATAAGCAGGAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTAGCAACAAGGTTCCTTCTATATATTTATGTTATAAGCAGGAACC  300

seq1  AGTGTTACTACTCTCAGCCTTAAATTAAAGAAGCCTCTCTGTCCAGTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTACTACTCTCAGCCTTAAATTAAAGAAGCCTCTCTGTCCAGTGAA  350

seq1  TAATGGTAAAAGCAGACTCATGGCTCTATAAAGTGCTGAGAATAAGTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTAAAAGCAGACTCATGGCTCTATAAAGTGCTGAGAATAAGTGGT  400

seq1  AGATGAATGTTCAGTCCTCGAGGCTATGGTAGCATCATTCCCTTCAACGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAATGTTCAGTCCTCGAGGCTATGGTAGCATCATTCCCTTCAACGG  450

seq1  CCCAGGGAACATTTCAGAGCAGGAAGATGATAGGTATTAGGGGGAGGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGAACATTTCAGAGCAGGAAGATGATAGGTATTAGGGGGAGGGAG  500

seq1  TTAAGAGACTGTAGAGAGGATTAGACTAAACTATACGCATGTGTGGAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGACTGTAGAGAGGATTAGACTAAACTATACGCATGTGTGGAATT  550

seq1  GTCAAAACACAAAAATATATGCAATATTTAAAAATAAAATAATAAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAACACAAAAATATATGCAATATTTAAAAATAAAATAATAAAACAA  600

seq1  AGCTGTGAGGTCGAAAGAAAACTCATACACATATGCCTCAGAGCAAGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGAGGTCGAAAGAAAACTCATACACATATGCCTCAGAGCAAGAGC  650

seq1  TGTAACACAAACCACAACTTTGTGAGAGAACCCTGAAACCATACCTAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACACAAACCACAACTTTGTGAGAGAACCCTGAAACCATACCTAAAG  700

seq1  AATTTCTCACCAGGGATTTCTGTCCAATAACTATTTTTTCAGCCTCAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTCACCAGGGATTTCTGTCCAATAACTATTTTTTCAGCCTCAGGC  750

seq1  TGTGCTACCCTTAGTATTGATCGCTCAGTAGTCTTGCAATTAATCTTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTACCCTTAGTATTGATCGCTCAGTAGTCTTGCAATTAATCTTCTT  800

seq1  GGCCAAGTATGGTTGTTTCAAAATAAAATAACATGTTATCTTCCTTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGTATGGTTGTTTCAAAATAAAATAACATGTTATCTTCCTTTTTT  850

seq1  TTTTGCATTTTCATTTTTCCTGTTACTCATTGGATTTTAGATCCAGCCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCATTTTCATTTTTCCTGTTACTCATTGGATTTTAGATCCAGCCAA  900

seq1  GGTTTTCTGATTGTTATGTAAAGGATGACAAATTGAATACATTTTTCTCC  950
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCTGATTG-TATGTAAAGGATGACAAATTGAATACATTTTTCTCC  949

seq1  TTATTAATTAATTCCTTTAACTAATTATTATAACAGTATTTGCAATTCTG  1000
      ||||| |||||||||||||||||| |||||||||||||||||||||||||
seq2  TTATT-ATTAATTCCTTTAACTAA-TATTATAACAGTATTTGCAATTCTG  997

seq1  ATCACAGGATGCTTATACT  1019
      |||||||||||||||||||
seq2  ATCACAGGATGCTTATACT  1016

seq1: chr6_63054273_63055398
seq2: B6Ng01-115D13.g_69_1183 (reverse)

seq1  TGCAGAAATGCCATTAAAACAAAGAAAAATTGTGGTGTTTTTTTAGAGGA  50
      ||||||| |||||| ||||||||  ||||||  ||   ||||||||||||
seq2  TGCAGAATTGCCATAAAAACAAAAGAAAATTTGGG---TTTTTTAGAGGA  47

seq1  GGTCAGTTGCAAAGGGGAGGCTCCAATTCAGTGAGACTTGACTTTATGTG  100
      |||||| ||||||| |   ||||||| |||||||||| ||||||||||||
seq2  GGTCAG-TGCAAAGAG--AGCTCCAA-TCAGTGAGAC-TGACTTTATGTG  92

seq1  AAACAGGCTATAAGGTTTTTCTGCATTTTATGTAACAGCAAGTCTACTAG  150
      ||||  |||||||||  |||||||||||||| ||||||||||||||||||
seq2  AAACCAGCTATAAGG--TTTCTGCATTTTAT-TAACAGCAAGTCTACTAG  139

seq1  ATATCTTTACTTTCAAAAAGTATTTTGTATTCTCCAAATAGACATATTAT  200
      |||||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  ATATCTTTAC-TTCAAAAAGTA-TTTGTATTCTCCAAATAGACATATTAT  187

seq1  AATGCATCTATTATTGTAGTAAAATTTTAATTCAGCAGTATCTCTGCTTC  250
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AATGCATCTATTA-TGTAGTAAAATTTTAATTCAGCAGTATCTCTGCTTC  236

seq1  AGC-AAGGAATCACATCCAAAAACCTTCTAGGTCTGTTGGAT-CCAGATG  298
      ||| ||| |||||||||||||||| ||||||||||||||||| |||||||
seq2  AGCAAAGAAATCACATCCAAAAACTTTCTAGGTCTGTTGGATCCCAGATG  286

seq1  GAGTACAGATATGACACATACTTTTACTAC-TTCTGGCTGGAATACAGAC  347
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAGTACAGATATGACACATACTTTTACTACTTTCTGGCTGGAATACAGAC  336

seq1  TAAGGGTCTTAGTCACACATTTAATCCCAAAATGACATCTAATTGAGGGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGTCTTAGTCACACATTTAATCCCAAAATGACATCTAATTGAGGGA  386

seq1  CAAAGTGATAAGTCAAAGAAAGATTTGTCAGAATGTGTTAGAGATAGAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGATAAGTCAAAGAAAGATTTGTCAGAATGTGTTAGAGATAGAAT  436

seq1  ATACTCAATTCTTATAAGAACAGCAGAGGAAGAGAGGTGACTTTGTGAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCAATTCTTATAAGAACAGCAGAGGAAGAGAGGTGACTTTGTGAAA  486

seq1  CAGCAGCAACTGAGAGAGAGGAGGTAAGGGAGAGGAGGAGGGGGAGGGAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCAACTGAGAGAGAGGAGGTAAGGGAGAGGAGGAGGGGGAGGGAG  536

seq1  AGAGAGGAGAGAGAAGAGAGAAGAGAGAAGAGAGAGAGAGAGACAGAGAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGAGAGAGAAGAGAGAAGAGAGAAGAGAGAGAGAGAGACAGAGAG  586

seq1  GGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGGATTTATTAGCCAAAGAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGGATTTATTAGCCAAAGAAA  636

seq1  AAGAAGACACCTGATTATTAAAACAGATTACAATAGTTAGTTTAAGGCCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGACACCTGATTATTAAAACAGATTACAATAGTTAGTTTAAGGCCA  686

seq1  AGCAAATCAATTCAGCCAAAAGCCAAAAGAAACTAGTCTGAGTCAGTTAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATCAATTCAGCCAAAAGCCAAAAGAAACTAGTCTGAGTCAGTTAG  736

seq1  CCTAGAAAGGCATTTGAGCTAGAACAGCTTAGTTTAGCCACTTTGCCAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAAGGCATTTGAGCTAGAACAGCTTAGTTTAGCCACTTTGCCAGA  786

seq1  CTTCAGAAAGAACAAGAAACGTTGAACGTATTCAACAATATGCCTCTGAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAAAGAACAAGAAACGTTGAACGTATTCAACAATATGCCTCTGAG  836

seq1  ATGAAAATTACATACAAAGAATTAAATTTACATTTATATCCTATAATGAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATTACATACAAAGAATTAAATTTACATTTATATCCTATAATGAT  886

seq1  CTGATTTCTTTCCATGTCAAATTAAATTAATAACTTTTATATTAGTGTTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTCTTTCCATGTCAAATTAAATTAATAACTTTTATATTAGTGTTA  936

seq1  ATAGACTACTTAGCCACATAGTACCAACACTAAATGTGATTTAAAAATAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTACTTAGCCACATAGTACCAACACTAAATGTGATTTAAAAATAT  986

seq1  ACTTTTTAAAAGATATTTTCATTATCTACATTTTGAATGTTATCCCCTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTAAAAGATATTTTCATTATCTACATTTTGAATGTTATCCCCTTT  1036

seq1  CCTAGATTCCCCTCCCCAAATCCCCTGTCTGCCCCCTGCTCCCCAACTCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATTCCCCTCCCCAAATCCCCTGTCTGCCCCCTGCTCCCCAACTCA  1086

seq1  CCCACTCCTGCATCCTGGCCCTGGAATTC  1126
      |||||||||||||||||||||||||||||
seq2  CCCACTCCTGCATCCTGGCCCTGGAATTC  1115