BAC Information

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BAC

Clone NameB6Ng01-115G24
Chromosome6 (Build37)
Map Location 54,420,484 - 54,517,199
singlet/doubletdoublet
Overlap geneWipf3, Scrn1
Upstream geneCreb5, LOC384386, 1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926
Downstream geneFkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115G24.bB6Ng01-115G24.g
ACCDH920705DH920706
length1,154759
definitionDH920705|Mus musculus domesticus DNA, BAC clone: B6Ng01-115G24, 5' end.DH920706|Mus musculus domesticus DNA, BAC clone: B6Ng01-115G24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,516,047 - 54,517,199)(54,420,484 - 54,421,241)
sequence
gaattccaaaagtccaaaagtggaatcaggtgaaaggctacatatgttct
tatcttgagagatattgtcatacacacacacacacacacacacacacaca
cacacacacacacaaacacacacaccatagagactataaaactttgattt
gtgttcatctgataactggaaaatacatgtgaatctgctgctgcccgctg
ctgctactctcttcccagtggactcttacagccttttcttatcgaggtag
atcgggtctcagcccctgaggcgttgttatcaaaagccttgaggtgggca
tcacctctttccctgtcaaaagtttattaaccctggtgtggaatcttgcc
tttgttacttgctgcatgaccttggtccacagagtgtgaatatgctgcat
cgtctggtttatgagcacgatcacaatcggttaacattagggaaggactt
tgacacattgaatcaaccaaatgaagaatgcatatctctgcagggaattc
tcgccaggcaccaaggctcagactagcaaccacacagtaaaatgttgcca
ggagaaagcaggacctggctccttaaagctctggttcctcccttcgagag
agtttcaaccaagaaataaaaatctagaaagaaaggaaccactttctgtt
gagtcccgccccctctgctgttcttgggggctcctggtgccctcccctcc
caggcggggcgggctctgaggcctcagctgtcaaacacaacgagtcctgg
ggcccagagcaccgggaggcggagggtgggtctgcggtcgcgtgaccaaa
ccagctgttagccgggggctggagagcctggagtctgggaaaccggagcg
ccggcggtcttctgcgctacggatgcagaggctgtaacctagccgccgca
gcgcccccaactccgcagtcgcagcatcagcaccgtttggacccggctgg
gagccggctgcttggcaggtgagcctcaggctacgcggggaagccgcggg
gcgctggcagctgctctttctgctgggaggtcaccaaaattcccaattac
aatcctacgcctcgcgagtgtggaccaggaagggagaatcgagaggttag
gtggcctcgtcttgccgacttggagatcaggacttcgaacgaagctactg
cagc
gaattccatgttttgtagaccccataccctgtgcacagttattggatttt
gtgtggttcttttatacttggaagtattttaaagggttgttaaatatttg
gttttgagttgattatcccccgtttaaggagtcgagcttggtttccggcg
tgctgacctgtaaaccatgacctccatgactccctttctggctctaggtg
ctttctgctagactgtttgcagcctgtgaacaggtagttttatctttcct
tcctactgcacacctcactgctctcccatgattgccattatgatgttgaa
tagatgagagggcagagcctagctttgatcctgacagcaggaagctactt
cacccctgggtttattgttggcaagtgagaatgaagcgccttcccattct
gtctgaagagagctcctatcatgaaaggaagctggattttgttgtttggc
tgccttttcttaatcaattgatgtaatcatgtgatttttttcttcatttt
tacattgtgttaatatgagtttgtttgaatgattggcaatgcacacacag
tgtgtatatgtatgcacacagatagatgggtagatagacagagaaaaaac
aaataaagaaaggatatgactgttcttaggtatggtggaggaggtttatt
gtagataaaggggagagcactagccagaggcagggacatctgggagagtt
cagagtgaagatgacccccaagctggagcttgtgaggagaaagggggaag
ggggagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_54516047_54517199
seq2: B6Ng01-115G24.b_51_1204 (reverse)

seq1  GCTGCAGTAGCTTCGTCCCGAAGTCCCTGATCT-CAAGTCGGGCCAGACC  49
      ||||||||||||||||  |||||| |||||||| |||||| ||| ||| |
seq2  GCTGCAGTAGCTTCGT-TCGAAGT-CCTGATCTCCAAGTC-GGCAAGA-C  46

seq1  GAGGCCACCTAACCTC-CGATCTCCCCTTCCCTGGTCCACACTCGCGAGG  98
      |||||||||||||||| |||| || || | ||||||||||||||||||||
seq2  GAGGCCACCTAACCTCTCGAT-TCTCCCTTCCTGGTCCACACTCGCGAGG  95

seq1  CGTTAGAATTGTAA-TGGGAAATGTGGTGACCTCCCAGC-GGAAGAGCAG  146
      || ||| ||||||| |||||| | ||||||||||||||| | ||||||||
seq2  CG-TAGGATTGTAATTGGGAATTTTGGTGACCTCCCAGCAGAAAGAGCAG  144

seq1  CTGCCAGCGCCCCGGCGC-TCCCCGCGTAGCCTGAGGCTCACCTGCCAAG  195
      ||||||||||||||  || |||||||||||||||||||||||||||||||
seq2  CTGCCAGCGCCCCGCGGCTTCCCCGCGTAGCCTGAGGCTCACCTGCCAAG  194

seq1  CAGCCGGCT-CCAGCCGGGTCC-AACGGTGCTGATGCTGCGACTGCGGAG  243
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  CAGCCGGCTCCCAGCCGGGTCCAAACGGTGCTGATGCTGCGACTGCGGAG  244

seq1  TTGGGGGCGCTGCGGCGGCTAGGTTACAGCCTCTGCATCCGTAGCGCAGA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGCGCTGCGGCGGCTAGGTTACAGCCTCTGCATCCGTAGCGCAGA  294

seq1  AGACCGCCGGCGCTCCGGTTTCCCAGACTCCAGGCTCTCCAGCCCCCGGC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCGCCGGCGCTCCGGTTTCCCAGACTCCAGGCTCTCCAGCCCCCGGC  344

seq1  TAACAGCTGGTTTGGTCACGCGACCGCAGACCCACCCTCCGCCTCCCGGT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCTGGTTTGGTCACGCGACCGCAGACCCACCCTCCGCCTCCCGGT  394

seq1  GCTCTGGGCCCCAGGACTCGTTGTGTTTGACAGCTGAGGCCTCAGAGCCC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGGCCCCAGGACTCGTTGTGTTTGACAGCTGAGGCCTCAGAGCCC  444

seq1  GCCCCGCCTGGGAGGGGAGGGCACCAGGAGCCCCCAAGAACAGCAGAGGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGCCTGGGAGGGGAGGGCACCAGGAGCCCCCAAGAACAGCAGAGGG  494

seq1  GGCGGGACTCAACAGAAAGTGGTTCCTTTCTTTCTAGATTTTTATTTCTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGGACTCAACAGAAAGTGGTTCCTTTCTTTCTAGATTTTTATTTCTT  544

seq1  GGTTGAAACTCTCTCGAAGGGAGGAACCAGAGCTTTAAGGAGCCAGGTCC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAAACTCTCTCGAAGGGAGGAACCAGAGCTTTAAGGAGCCAGGTCC  594

seq1  TGCTTTCTCCTGGCAACATTTTACTGTGTGGTTGCTAGTCTGAGCCTTGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTCCTGGCAACATTTTACTGTGTGGTTGCTAGTCTGAGCCTTGG  644

seq1  TGCCTGGCGAGAATTCCCTGCAGAGATATGCATTCTTCATTTGGTTGATT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGCGAGAATTCCCTGCAGAGATATGCATTCTTCATTTGGTTGATT  694

seq1  CAATGTGTCAAAGTCCTTCCCTAATGTTAACCGATTGTGATCGTGCTCAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGTCAAAGTCCTTCCCTAATGTTAACCGATTGTGATCGTGCTCAT  744

seq1  AAACCAGACGATGCAGCATATTCACACTCTGTGGACCAAGGTCATGCAGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGACGATGCAGCATATTCACACTCTGTGGACCAAGGTCATGCAGC  794

seq1  AAGTAACAAAGGCAAGATTCCACACCAGGGTTAATAAACTTTTGACAGGG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAACAAAGGCAAGATTCCACACCAGGGTTAATAAACTTTTGACAGGG  844

seq1  AAAGAGGTGATGCCCACCTCAAGGCTTTTGATAACAACGCCTCAGGGGCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGTGATGCCCACCTCAAGGCTTTTGATAACAACGCCTCAGGGGCT  894

seq1  GAGACCCGATCTACCTCGATAAGAAAAGGCTGTAAGAGTCCACTGGGAAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCGATCTACCTCGATAAGAAAAGGCTGTAAGAGTCCACTGGGAAG  944

seq1  AGAGTAGCAGCAGCGGGCAGCAGCAGATTCACATGTATTTTCCAGTTATC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGCAGCAGCGGGCAGCAGCAGATTCACATGTATTTTCCAGTTATC  994

seq1  AGATGAACACAAATCAAAGTTTTATAGTCTCTATGGTGTGTGTGTTTGTG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAACACAAATCAAAGTTTTATAGTCTCTATGGTGTGTGTGTTTGTG  1044

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGACAATATC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGACAATATC  1094

seq1  TCTCAAGATAAGAACATATGTAGCCTTTCACCTGATTCCACTTTTGGACT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGATAAGAACATATGTAGCCTTTCACCTGATTCCACTTTTGGACT  1144

seq1  TTTGGAATTC  1153
      ||||||||||
seq2  TTTGGAATTC  1154

seq1: chr6_54420484_54421241
seq2: B6Ng01-115G24.g_70_828

seq1  GAATTCCATGTTTTGTAGACCCCATACCCTGTGCACAGTTATTGGATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTTTTGTAGACCCCATACCCTGTGCACAGTTATTGGATTTT  50

seq1  GTGTGGTTCTTTTATACTTGGAAGTATTTTAAAGGGTTGTTAAATATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTTCTTTTATACTTGGAAGTATTTTAAAGGGTTGTTAAATATTTG  100

seq1  GTTTTGAGTTGATTATCCCCCGTTTAAGGAGTCGAGCTTGGTTTCCGGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAGTTGATTATCCCCCGTTTAAGGAGTCGAGCTTGGTTTCCGGCG  150

seq1  TGCTGACCTGTAAACCATGACCTCCATGACTCCCTTTCTGGCTCTAGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACCTGTAAACCATGACCTCCATGACTCCCTTTCTGGCTCTAGGTG  200

seq1  CTTTCTGCTAGACTGTTTGCAGCCTGTGAACAGGTAGTTTTATCTTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGCTAGACTGTTTGCAGCCTGTGAACAGGTAGTTTTATCTTTCCT  250

seq1  TCCTACTGCACACCTCACTGCTCTCCCATGATTGCCATTATGATGTTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTGCACACCTCACTGCTCTCCCATGATTGCCATTATGATGTTGAA  300

seq1  TAGATGAGAGGGCAGAGCCTAGCTTTGATCCTGACAGCAGGAAGCTACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGAGAGGGCAGAGCCTAGCTTTGATCCTGACAGCAGGAAGCTACTT  350

seq1  CACCCCTGGGTTTATTGTTGGCAAGTGAGAATGAAGCGCCTTCCCATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCTGGGTTTATTGTTGGCAAGTGAGAATGAAGCGCCTTCCCATTCT  400

seq1  GTCTGAAGAGAGCTCCTATCATGAAAGGAAGCTGGATTTTGTTGTTTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAGAGAGCTCCTATCATGAAAGGAAGCTGGATTTTGTTGTTTGGC  450

seq1  TGCCTTTTCTTAATCAATTGATGTAATCATGTGATTTTTTTCTTCATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTTCTTAATCAATTGATGTAATCATGTGATTTTTTTCTTCATTTT  500

seq1  TACATTGTGTTAATATGAGTTTGTTTGAATGATTGGCAATGCACACACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGTGTTAATATGAGTTTGTTTGAATGATTGGCAATGCACACACAG  550

seq1  TGTGTATATGTATGCACACAGATAGATGGGTAGATAGACAGAGAAAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATATGTATGCACACAGATAGATGGGTAGATAGACAGAGAAAAAAC  600

seq1  AAATAAAGAAAGGATATGACTGTTCTTAGGTATGGTGGAGGAGGTTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGAAAGGATATGACTGTTCTTAGGTATGGTGGAGGAGGTTTATT  650

seq1  GTAGATAAAGGGGAGAGCACTAGCCAGAGGCAGGGACATCTGGGAGAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATAAAGGGGAGAGCACTAGCCAGAGGCAGGGACATCTGGGAGAGTT  700

seq1  CAGAGTGAAGATGACCCCCAAGCTGGAGCTTGTGAGGAGAAAGGGGG-AG  749
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAGAGTGAAGATGACCCCCAAGCTGGAGCTTGTGAGGAGAAAGGGGGAAG  750

seq1  GGGGAGGGG  758
      |||||||||
seq2  GGGGAGGGG  759