BAC Information

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BAC

Clone NameB6Ng01-115J17
Chromosome6 (Build37)
Map Location 19,610,921 - 19,611,990
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
Downstream geneLOC100040838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115J17.bB6Ng01-115J17.g
ACCDH920827DH920828
length1,0621,092
definitionDH920827|Mus musculus domesticus DNA, BAC clone: B6Ng01-115J17, 5' end.DH920828|Mus musculus domesticus DNA, BAC clone: B6Ng01-115J17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagactgcaggcaagaggcgccctgagtcttatctcaggaatgta
gattcctccttaacagcccagggtgtcaagctgagctcatcacataactc
tggtccttagaagtcttggaagtcaggaagagataaggaagagggcacta
taattcaaacttttagggtcttaggtgccaggaagggatagggaggagga
ggtgactggctcttaacacaaggccatatggcttattagggtgggaaact
gtgaaaggcttactttctcacagtatggtctccaacattgtgtagtagta
taaacaaaacaaattgaaaatcaaaaccacaatgaagtaactcgatactc
taattagaataaacactgaatcaagacaaaaacaaataagtttattggtc
agatataacaaaacaggccaatgtatgctaatggcaggatggttgggtat
ttccagtgaaaggaaaattctctctctgtctccctgtctctgtctctgtc
cgtctatctgtctgtctatctgtctgtctgtctgtctgtctatctgtctg
tctgtctctctctctctctctctctcacacacacacaaagagagagagag
agagagagagagagagagagagagagagagagagaaatgaagggtgaaga
tgttctgaactgagcaggcccacatgctgcctggaaggctgaatagaaca
aaacttgagctagtgtttagggatgtcagactcttgatttttcagctgtt
tatctcagactcacaacagagataacagagattctttaatgaactctctg
ctctttaatcttgaacttgtgccacatcactgagccctctatgcaatttt
tagtttgtaatgactccattttattttggaaattttttgctcaactccta
atttttaaatatatgtggtaaatatatagcttaaatatttattggtaatg
aagttaaagaatacatttaaagtacataaggagctgaaggatctgcaacc
ctatatgagaacagcaatataaactaacagtacctcccgtggagctcctg
tctctagctgca

gaattctttctttagctctgagccccattttttaatggggttatttgact
ttctggagtccaccttcttgagttctttatatatatatatatatatatat
atatacatatatatatatatatatatattggatatttgtcctctatctga
tttaggatagataaagatcctttcccaatctgttggtggcctttttgtct
tattgaaggtgtcttttgccttacagaagctttgcagtttcatgaggtca
catttgtcaattctcgatcttacagcacaagccattgctgttctattcag
gaatttttcccctgaaccaatatctttgaggcttttccctactttctcct
ctataagtttcattgtctctggttttatgtggagttccttgatccactta
gatttgaccttagtagaaggagataggaatggatcaattcgcattcttct
acatgataaccaccagttgtgtcagcaccattttttgaaaagactgtctt
ttttccacttgatggttttagcttgttgaagatcaagtgaccataagtgt
gtgggttcatttctgggtcttcaaatctattcctttggtctagttgtctg
ttgctataccagtaccatgcagtttgtatcacaattgttccatagtaaag
ctttaggtcaggcatggtgattccaccagaggttcttttatccttgagaa
gactttttgttatcctaggttttttgttattccagatgaattttgcagat
tgctctttctaactagttgaagaattgagttggaattttgatggggattg
cactgaatccatagattgcttttagcaagatagccatttttaaaatgttg
atactgccaatccaggagcataagagatctttccatcttctgagatttct
ttaattttctttcttcagatactttgaagttcttatcatacagatctttc
acttctgtagtagaatcacgccaaggtattttatattatttgtgactatt
gagaggggtggttccctaatttttttctcatctgttattctttggaaaga
aaggcattgactgttttgtataatttataagccggcttactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_19610921_19611990
seq2: B6Ng01-115J17.b_47_1108

seq1  GAATTCAGACTGCAGGCAAGAGGCGCCCTGAGTCTTATCTCAGGAATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACTGCAGGCAAGAGGCGCCCTGAGTCTTATCTCAGGAATGTA  50

seq1  GATTCCTCCTTAACAGCCCAGGGTGTCAAGCTGAGCTCATCACATAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTCCTTAACAGCCCAGGGTGTCAAGCTGAGCTCATCACATAACTC  100

seq1  TGGTCCTTAGAAGTCTTGGAAGTCAGGAAGAGATAAGGAAGAGGGCACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTTAGAAGTCTTGGAAGTCAGGAAGAGATAAGGAAGAGGGCACTA  150

seq1  TAATTCAAACTTTTAGGGTCTTAGGTGCCAGGAAGGGATAGGGAGGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCAAACTTTTAGGGTCTTAGGTGCCAGGAAGGGATAGGGAGGAGGA  200

seq1  GGTGACTGGCTCTTAACACAAGGCCATATGGCTTATTAGGGTGGGAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACTGGCTCTTAACACAAGGCCATATGGCTTATTAGGGTGGGAAACT  250

seq1  GTGAAAGGCTTACTTTCTCACAGTATGGTCTCCAACATTGTGTAGTAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGGCTTACTTTCTCACAGTATGGTCTCCAACATTGTGTAGTAGTA  300

seq1  TAAACAAAACAAATTGAAAATCAAAACCACAATGAAGTAACTCGATACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAAACAAATTGAAAATCAAAACCACAATGAAGTAACTCGATACTC  350

seq1  TAATTAGAATAAACACTGAATCAAGACAAAAACAAATAAGTTTATTGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGAATAAACACTGAATCAAGACAAAAACAAATAAGTTTATTGGTC  400

seq1  AGATATAACAAAACAGGCCAATGTATGCTAATGGCAGGATGGTTGGGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATAACAAAACAGGCCAATGTATGCTAATGGCAGGATGGTTGGGTAT  450

seq1  TTCCAGTGAAAGGAAAATTCTCTCTCTGTCTCCCTGTCTCTGTCTCTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTGAAAGGAAAATTCTCTCTCTGTCTCCCTGTCTCTGTCTCTGTC  500

seq1  CGTCTATCTGTCTGTCTATCTGTCTGTCTGTCTGTCTGTCTATCTGTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTATCTGTCTGTCTATCTGTCTGTCTGTCTGTCTGTCTATCTGTCTG  550

seq1  TCTGTCTCTCTCTCTCTCTCTCTCTCACACACACACAAAGAGAGAGAGAG  600
      ||||||||||||||||||||||||||||||||||||||    ||||||||
seq2  TCTGTCTCTCTCTCTCTCTCTCTCTCACACACACACAA----AGAGAGAG  596

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATGAAGGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATGAAGGGTG  646

seq1  AAGATGTTCTGAACTGAGCAGGCCCACATGCTGCCTGGAAGGCTGAATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTTCTGAACTGAGCAGGCCCACATGCTGCCTGGAAGGCTGAATAG  696

seq1  AACAAAACTTGAGCTAGTGTTTAGGGATGTCAGACTCTTGATTTTTCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACTTGAGCTAGTGTTTAGGGATGTCAGACTCTTGATTTTTCAGC  746

seq1  TGTTTATCTCAGACTCACAACAGAGATAACAGAGATTCTTTAATGAACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATCTCAGACTCACAACAGAGATAACAGAGATTCTTTAATGAACTC  796

seq1  TCTGCTCTTTAATCTTGAACTTGTGCCACATCACTGAGCCCTCTATGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCTTTAATCTTGAACTTGTGCCACATCACTGAGCCCTCTATGCAA  846

seq1  TTTTTAGTTTGTAATGACTCCATTTTATTTTGGAAATTTTTTGCTCAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGTTTGTAATGACTCCATTTTATTTTGGAAATTTTTTGCTCAACT  896

seq1  CCTAATTTTTAAATATATGTGGTAAATATATAGCTTAAATATTTATTGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTTTTAAATATATGTGGTAAATATATAGCTTAAATATTTATTGGT  946

seq1  AATGAAGTTTAAAGAAATACATTTAAAGTACATAAGGAGCTGAAGGGATC  1000
      ||||||| |||||| ||||||||||||||||||||||||||||| |||||
seq2  AATGAAG-TTAAAG-AATACATTTAAAGTACATAAGGAGCTGAA-GGATC  993

seq1  TGCAACCCTATATGAGGAACAGCAATATAAACTAACCAGTACCCCCCGT-  1049
      ||||||||||||||| ||||||||||||||||||| ||||||| ||||| 
seq2  TGCAACCCTATATGA-GAACAGCAATATAAACTAA-CAGTACCTCCCGTG  1041

seq1  GAGCTCGTGTCTCTAGCTGCA  1070
      |||||| ||||||||||||||
seq2  GAGCTCCTGTCTCTAGCTGCA  1062


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