BAC Information

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BAC

Clone NameB6Ng01-115O21
Chromosome6 (Build37)
Map Location 35,012,342 - 35,097,863
singlet/doubletdoublet
Overlap geneCnot4
Upstream geneLrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik
Downstream geneNup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312, LOC100039327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115O21.bB6Ng01-115O21.g
ACCDH921061DH921062
length1,178919
definitionDH921061|Mus musculus domesticus DNA, BAC clone: B6Ng01-115O21, 5' end.DH921062|Mus musculus domesticus DNA, BAC clone: B6Ng01-115O21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,012,342 - 35,013,524)(35,097,171 - 35,097,863)
sequence
gaattcagagagcaggagtaatgcactaattcctcccactctaatctatt
agtaaggcattcagatggctcctgtctaggagagcacacctaattttcag
taagaaaaaggtcagtagtgaagcatttgcctagcacacataaggccctg
gatttgttccaaagcaccacaaaaaggtaacagtaactatggtggtggtg
atggtaacaatatacacttcctctccaaggaataaaaactggtagattcc
ctataaaagttttcctttcaaaacctttactagataatatactagcgccc
tctatctgtggtcaaaggaagcttaaaacactatcaattttttggaagct
acaactcttaatacacctcaagagattttcagtcaaaatacatatggtta
taacatggtttcacttaataaaactaatgtgactgacatgaaactctttt
ctagcaatttgtcctttaaatttttggcatagtttaaacctgttaaatga
aggcaaagtgagatgagtctagtctttaaaatgacaaagatttgggttag
aatcttgtttctacagcacatttgtgtggaatacttgttagcacttaact
cagttagttttcttatctgcagtaataacgacagtatctgccacacagga
gcatgaagataaaagaagcacattaaaagtttatttacatcttccctttg
ttttagtcttaacttcacatcttcattttcccacaaggactgtgtgagcc
acatcaagccatgatcacagtgactcttaccacactgtgatacactgtga
ctcttatcaccaggtctactcagtgtctgaagcacagtaactcagccagg
catcattccttttacactctggttgttgcacagataatgtcccaacctac
acgaaagaacccaatacccatccttacacattacagctgtgtggcttcct
tgtttctattctctgcatttgaattccatcatttctaagcaatgtatcat
acagaaaactattttttaataagaatgactgagtatagaaatgctgagta
tatcagaaaatgttactacaacatcctcatttccttataagcattccaga
aactgtagtatggacaattatagcacaatggctcatcatcttagaaagag
tagtacaaattatcaaggaatggtcagt
gaattccagcacagccagggttgttatacagagaaaccctgttttgaaaa
tcaaaacaaaacaacacaacaacaataaaagagatctatgagcctatggg
acccactcttattcaaaccaccacacatcattaattacattagttaatgt
ttttaggaaatgccatctgagacctacccagaagaacgtttctttttttt
ttttttttaaagatttatttatttattatatgtaagtagactgtagctgt
cttcagacgcaccagaagagggcatcagatctctgttacaggtggttgtg
agccaccatgtggttgctgggatttgaacttcggacctttggaagagcag
tcgggtgctcttaccccctgagccatctcaccagcccccagaagaacgtt
tcttaattgattccagattcagtcagttgactaccaagactgatcattag
aatttctaaagtaaaattggtcactctgagagtgtggagtatggttttgg
tgttagtcttagtcttagtctttgcatacaactcctaaaacttttgtgat
cttcaagggtctttctttttaacaaattagttctctactggctggaagtc
cctcttcaggataactgttagttatcagaaagttcaaggtaagattagaa
ggttgggactttgaacctccagtctctgggatgagtagggtgaggctgga
ggttaagctgagtcttaaaggtcaatgatctaattagtcatgtctctaca
atgaaacctccacaaaagccacatgacaaggtccagagaccttccagact
cattgatgatcctgggatggagtgtactaaaagaggacacagagcttccg
tagcatcccctctatctctcattccatgtatctcccgtgtatagacactg
taatagcctctagacagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_35012342_35013524
seq2: B6Ng01-115O21.b_45_1222

seq1  GAATTCAGAGAGCAGGAGTAATGCACTAATTCCTCCCACTCTAATCTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAGCAGGAGTAATGCACTAATTCCTCCCACTCTAATCTATT  50

seq1  AGTAAGGCATTCAGATGGCTCCTGTCTAGGAGAGCACACCTAATTTTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGCATTCAGATGGCTCCTGTCTAGGAGAGCACACCTAATTTTCAG  100

seq1  TAAGAAAAAGGTCAGTAGTGAAGCATTTGCCTAGCACACATAAGGCCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAAGGTCAGTAGTGAAGCATTTGCCTAGCACACATAAGGCCCTG  150

seq1  GATTTGTTCCAAAGCACCACAAAAAGGTAACAGTAACTATGGTGGTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTTCCAAAGCACCACAAAAAGGTAACAGTAACTATGGTGGTGGTG  200

seq1  ATGGTAACAATATACACTTCCTCTCCAAGGAATAAAAACTGGTAGATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAACAATATACACTTCCTCTCCAAGGAATAAAAACTGGTAGATTCC  250

seq1  CTATAAAAGTTTTCCTTTCAAAACCTTTACTAGATAATATACTAGCGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAAGTTTTCCTTTCAAAACCTTTACTAGATAATATACTAGCGCCC  300

seq1  TCTATCTGTGGTCAAAGGAAGCTTAAAACACTATCAATTTTTTGGAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTGTGGTCAAAGGAAGCTTAAAACACTATCAATTTTTTGGAAGCT  350

seq1  ACAACTCTTAATACACCTCAAGAGATTTTCAGTCAAAATACATATGGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCTTAATACACCTCAAGAGATTTTCAGTCAAAATACATATGGTTA  400

seq1  TAACATGGTTTCACTTAATAAAACTAATGTGACTGACATGAAACTCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGGTTTCACTTAATAAAACTAATGTGACTGACATGAAACTCTTTT  450

seq1  CTAGCAATTTGTCCTTTAAATTTTTGGCATAGTTTAAACCTGTTAAATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAATTTGTCCTTTAAATTTTTGGCATAGTTTAAACCTGTTAAATGA  500

seq1  AGGCAAAGTGAGATGAGTCTAGTCTTTAAAATGACAAAGATTTGGGTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAGTGAGATGAGTCTAGTCTTTAAAATGACAAAGATTTGGGTTAG  550

seq1  AATCTTGTTTCTACAGCACATTTGTGTGGAATACTTGTTAGCACTTAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGTTTCTACAGCACATTTGTGTGGAATACTTGTTAGCACTTAACT  600

seq1  CAGTTAGTTTTCTTATCTGCAGTAATAACGACAGTATCTGCCACACAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGTTTTCTTATCTGCAGTAATAACGACAGTATCTGCCACACAGGA  650

seq1  GCATGAAGATAAAAGAAGCACATTAAAAGTTTATTTACATCTTCCCTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAAGATAAAAGAAGCACATTAAAAGTTTATTTACATCTTCCCTTTG  700

seq1  TTTTAGTCTTAACTTCACATCTTCATTTTCCCACAAGGACTGTGTGAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTCTTAACTTCACATCTTCATTTTCCCACAAGGACTGTGTGAGCC  750

seq1  ACATCAAGCCATGATCACAGTGACTCTTACCACACTGTGATACACTGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAAGCCATGATCACAGTGACTCTTACCACACTGTGATACACTGTGA  800

seq1  CTCTTATCACCAGGTCTACTCAGTGTCTGAAGCACAGTAACTCAGCCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATCACCAGGTCTACTCAGTGTCTGAAGCACAGTAACTCAGCCAGG  850

seq1  CATCATTCCTTTTACACTCTGGTTGTTGCACAGATAATGTCCCAACCTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTCCTTTTACACTCTGGTTGTTGCACAGATAATGTCCCAACCTAC  900

seq1  ACGAAAGAACCCAATACCCATCCTTACACATTACAGCTGTGTGGCTTCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAAGAACCCAATACCCATCCTTACACATTACAGCTGTGTGGCTTCCT  950

seq1  TGTTTTCTATTCTCTGCATTTGAATTCCATCATTTCTAAGCAATGTAATC  1000
      || ||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TG-TTTCTATTCTCTGCATTTGAATTCCATCATTTCTAAGCAATGT-ATC  998

seq1  ATACAGAAAACTA-TTTTTAATAAGAATGACTGAGTATAGAAATGCTGAG  1049
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATACAGAAAACTATTTTTTAATAAGAATGACTGAGTATAGAAATGCTGAG  1048

seq1  TATATCAGAAATGTTTACTACAACAATCTCATTTCCTTATTAAGCATCCC  1099
      |||||||||||   |||||||||||  |||||||||||| ||||||| ||
seq2  TATATCAGAAAATGTTACTACAACATCCTCATTTCCTTA-TAAGCATTCC  1097

seq1  AGACACTGTAGGTAATGAGCAATAAATAGCAC-ATGGTTCATCATC-TAG  1147
      ||| |||||||   |||  ||||  ||||||| |||| |||||||| |||
seq2  AGAAACTGTAG--TATGGACAAT-TATAGCACAATGGCTCATCATCTTAG  1144

seq1  AAAGAGTAGTACAAATTATCAAAGGAGATGGTCAGT  1183
      |||||||||||||||||||| ||||| |||||||||
seq2  AAAGAGTAGTACAAATTATC-AAGGA-ATGGTCAGT  1178

seq1: chr6_35097171_35097863
seq2: B6Ng01-115O21.g_68_760 (reverse)

seq1  TCACCCTACTCATCCCAGAGACTGGAGGTTCAAAGTCCCAACCTTCTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTACTCATCCCAGAGACTGGAGGTTCAAAGTCCCAACCTTCTAAT  50

seq1  CTTACCTTGAACTTTCTGATAACTAACAGTTATCCTGAAGAGGGACTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTTGAACTTTCTGATAACTAACAGTTATCCTGAAGAGGGACTTCC  100

seq1  AGCCAGTAGAGAACTAATTTGTTAAAAAGAAAGACCCTTGAAGATCACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTAGAGAACTAATTTGTTAAAAAGAAAGACCCTTGAAGATCACAA  150

seq1  AAGTTTTAGGAGTTGTATGCAAAGACTAAGACTAAGACTAACACCAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTAGGAGTTGTATGCAAAGACTAAGACTAAGACTAACACCAAAAC  200

seq1  CATACTCCACACTCTCAGAGTGACCAATTTTACTTTAGAAATTCTAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTCCACACTCTCAGAGTGACCAATTTTACTTTAGAAATTCTAATGA  250

seq1  TCAGTCTTGGTAGTCAACTGACTGAATCTGGAATCAATTAAGAAACGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTTGGTAGTCAACTGACTGAATCTGGAATCAATTAAGAAACGTTC  300

seq1  TTCTGGGGGCTGGTGAGATGGCTCAGGGGGTAAGAGCACCCGACTGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGGGCTGGTGAGATGGCTCAGGGGGTAAGAGCACCCGACTGCTCT  350

seq1  TCCAAAGGTCCGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGGTCCGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACC  400

seq1  ACCTGTAACAGAGATCTGATGCCCTCTTCTGGTGCGTCTGAAGACAGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTAACAGAGATCTGATGCCCTCTTCTGGTGCGTCTGAAGACAGCTA  450

seq1  CAGTCTACTTACATATAATAAATAAATAAATCTTTAAAAAAAAAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTACTTACATATAATAAATAAATAAATCTTTAAAAAAAAAAAAAAA  500

seq1  AGAAACGTTCTTCTGGGTAGGTCTCAGATGGCATTTCCTAAAAACATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACGTTCTTCTGGGTAGGTCTCAGATGGCATTTCCTAAAAACATTAA  550

seq1  CTAATGTAATTAATGATGTGTGGTGGTTTGAATAAGAGTGGGTCCCATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTAATTAATGATGTGTGGTGGTTTGAATAAGAGTGGGTCCCATAG  600

seq1  GCTCATAGATCTCTTTTATTGTTGTTGTGTTGTTTTGTTTTGATTTTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATAGATCTCTTTTATTGTTGTTGTGTTGTTTTGTTTTGATTTTCAA  650

seq1  AACAGGGTTTCTCTGTATAACAACCCTGGCTGTGCTGGAATTC  693
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGTTTCTCTGTATAACAACCCTGGCTGTGCTGGAATTC  693