BAC Information

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BAC

Clone NameB6Ng01-117B22
Chromosome6 (Build37)
Map Location 40,970,457 - 40,971,631
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208
Downstream gene2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117B22.bB6Ng01-117B22.g
ACCDH921941DH921942
length1,1761,167
definitionDH921941|Mus musculus domesticus DNA, BAC clone: B6Ng01-117B22, 5' end.DH921942|Mus musculus domesticus DNA, BAC clone: B6Ng01-117B22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctggtttgattcaaataatttttagaagaatgtttttagagatg
ctcttagttgcgagaaagatgtagtaaagataaaatcaagaatagaatgt
acctgggtctaccttgagtgcaaactcagaagcagtgagccccacaggcc
ccagaggaggctccactcccaggcaccataccacacccaggatcttaggg
tcaggggtgaagagaacacaacatccctcccaaaagcaccaatagtaact
gggaccagcaggatccagggactcaggaaccccgcccaaaaaaatggctc
aggttccttccttggatgccaactcagggcagcagccagtcctacagccc
ctagagaaggctccactcccaggtgatctagcaagaccatgatctgagga
tcccaggatcccaggatcccaggtgcttggtcacaccaggatctcaaggt
gtcagaggcagcttgactcccaggaactctgacaaaaccagaatctcagg
atcacaggatcctggaatcacaggatcacagagacagctcaactctgagg
agctttgactcaaccaggagtacaggaaggacaggcttcagtcagatata
gtgagggcaggaaacactagagataatcagatggtggaaggcaagcataa
gaaaggaagtaacagaaactaaggttactgggcaacatcagaacccaatt
cttccagcataagaagtcctggatacactatcacaccagaaaagcaagat
tcggatctaaggtcactccttctattgctttaggtgatatgggactgttt
agatcattaatctgatcctgatttaactttggtacatgggtatctgtata
gaaaattgtccattgcatccagattttccagttttgtttgagtatagctt
tcttgtagtaggatatgatgatgttttgggatttcctcaggttctgatgt
tatgtctctcttttcatttcttgattttgttaataggaaactgtccctgt
gccttctagttagttctggctaaagggtttatcatcttgttaaattttct
aagatcagcttctgcttggtcttgtatagtcctttttgtttttcagtttg
tgattcagcctgagttatttctggcattaatcctttcttgaacgcttcct
atggtgaggacttctaggatggtgcc
gaattctctatctattggtagtgggtcacaattctaccttaagtaggtag
cccttataggattggatgctttaagaatatggtttctctgtttggagaag
aaaaagttcaaatgagattcacagaaatgcttttctgttgttataggaga
atctaggttctcgttggagaacaaaatgtccttaaaggaaatgaacagtt
cattgatgcagaaaagatcatctgccaccccaagaacaacaaacacacag
aggataaggatatcatgttgattaaactgaaatcacctgtcaccttcaac
tctcaagtgtccactatctctctgccaagatcctgtgcatttacaggtgc
tcagggccttctgtctgactgggtaaatactgtgagccttataaattttg
tataagacatttctgtcatacacagatgttcagactggtttcatggttgg
ttgtacactcataacttatggcacaacaatgaaactatgtgtattactga
tcaccaacttatacaagtactaccctgtaaagcagtaattccacactaaa
aatatgattcctgtttgtttgtttttaaaaaattaatcctgcgaatcaaa
gaatctctatgaatcttagagactgaaaactctcaatgaggatttttaaa
agaatttttattgtttttaattactaatacctgtctctgtggaactgtgt
gcacctgaggaaagtccatgcatagactagaggtgtttgacgcactttgt
atttcagttactgggttgtatgacctgcctaacatgggtgctggaaaaaa
gttctagtcctccacaagaatatcaagtgctctaacatctgtaccatgtc
tctggaccttgaagaattattttgtaaatgcagcttttgttttcttccaa
cgtgcagaagaataaatgaagagtttttgaaagaaaaactgtattcctcg
gagaataggaaaggaagcatatcgtcttaggaagcttcaggtgtgtcaca
ataatttcatggacatcagctttcaagtatgagtcatttctctagtctct
agttcactataagaacaggtctgtggtgatcaagtcgtgataatccccca
tgccccacaggtacaaccaagcacagctgcgacgaagctctagaagttcg
gcaagggttgcatcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_40970457_40971631
seq2: B6Ng01-117B22.g_67_1233 (reverse)

seq1  GAAGTATGCAACTCT--GCGAATTTCTAGGAGCTTCGTCTGCAGCTGTGC  48
      |||| ||||||| ||   |||| ||||| |||||||||| ||||||||||
seq2  GAAG-ATGCAACCCTTGCCGAACTTCTA-GAGCTTCGTC-GCAGCTGTGC  47

seq1  TTGGTTTGTGACTTGGTGGGGCATGGGGGATTTTACTCTGACTTTTGATC  98
      |||| ||||  ||  ||||||||||||||||| | | | |||  ||||||
seq2  TTGG-TTGTACCT--GTGGGGCATGGGGGATTAT-CAC-GAC--TTGATC  90

seq1  A-CACAGAACTGTCTATATAGTGAACTAGAGAACTATGAGGAATTGACTC  147
      | |||||| ||||   ||||||||||||||| |||| || ||| ||||||
seq2  ACCACAGACCTGTTCTTATAGTGAACTAGAG-ACTA-GA-GAAATGACTC  137

seq1  ATACTTTGAAGCTGATGTCCATTGAATTATTGTTGACACACCTTGAGCTT  197
      ||||||  ||||||||||||||  |||||||| ||||||||||  |||||
seq2  ATACTTGAAAGCTGATGTCCATGAAATTATTG-TGACACACCTGAAGCTT  186

seq1  CCTAAGACGATATGCTTCCTTTCCTTATCTCCGAGG-ATACAGTTTTTCT  246
      |||||||||||||||||||||||||  ||||||||| |||||||||||||
seq2  CCTAAGACGATATGCTTCCTTTCCTATTCTCCGAGGAATACAGTTTTTCT  236

seq1  TTTCAAAACTCTTCATTTATTCTTCTGCACGTTGGAAG-AAACAAAAGCT  295
      ||  |||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTCAAAAACTCTTCATTTATTCTTCTGCACGTTGGAAGAAAACAAAAGCT  286

seq1  GCATTTAC-AAATAATTCTTCAAGGTCCAGAGACATGGTACAGATGTTTA  344
      |||||||| ||||||||||||||||||||||||||||||||||||| |||
seq2  GCATTTACAAAATAATTCTTCAAGGTCCAGAGACATGGTACAGATG-TTA  335

seq1  GAGCACTTGATATTCTTGTGGAGGACTAGAACTTTTTTCCAGCACCCATG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTTGATATTCTTGTGGAGGACTAGAACTTTTTTCCAGCACCCATG  385

seq1  TTAGGCAGGTCATACAACCCAGTAACTGAAATAC-AAGTGCGTCAAACAC  443
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTAGGCAGGTCATACAACCCAGTAACTGAAATACAAAGTGCGTCAAACAC  435

seq1  CTCTAGTCTATGCATGGACTTTCCTCAGGTGCACACAGTTCCACAGAGAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGTCTATGCATGGACTTTCCTCAGGTGCACACAGTTCCACAGAGAC  485

seq1  AGGTATTAGTAATTAAAAACAATAAAAATTCTTTTAAAAATCCTCATTGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTAGTAATTAAAAACAATAAAAATTCTTTTAAAAATCCTCATTGA  535

seq1  GAGTTTTCAGTCTCTAAGATTCATAGAGATTCTTTGATTCGCAGGATTAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTCAGTCTCTAAGATTCATAGAGATTCTTTGATTCGCAGGATTAA  585

seq1  TTTTTTAAAAACAAACAAACAGGAATCATATTTTTAGTGTGGAATTACTG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAAACAAACAAACAGGAATCATATTTTTAGTGTGGAATTACTG  635

seq1  CTTTACAGGGTAGTACTTGTATAAGTTGGTGATCAGTAATACACATAGTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAGGGTAGTACTTGTATAAGTTGGTGATCAGTAATACACATAGTT  685

seq1  TCATTGTTGTGCCATAAGTTATGAGTGTACAACCAACCATGAAACCAGTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTTGTGCCATAAGTTATGAGTGTACAACCAACCATGAAACCAGTC  735

seq1  TGAACATCTGTGTATGACAGAAATGTCTTATACAAAATTTATAAGGCTCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATCTGTGTATGACAGAAATGTCTTATACAAAATTTATAAGGCTCA  785

seq1  CAGTATTTACCCAGTCAGACAGAAGGCCCTGAGCACCTGTAAATGCACAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTTACCCAGTCAGACAGAAGGCCCTGAGCACCTGTAAATGCACAG  835

seq1  GATCTTGGCAGAGAGATAGTGGACACTTGAGAGTTGAAGGTGACAGGTGA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTGGCAGAGAGATAGTGGACACTTGAGAGTTGAAGGTGACAGGTGA  885

seq1  TTTCAGTTTAATCAACATGATATCCTTATCCTCTGTGTGTTTGTTGTTCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTTAATCAACATGATATCCTTATCCTCTGTGTGTTTGTTGTTCT  935

seq1  TGGGGTGGCAGATGATCTTTTCTGCATCAATGAACTGTTCATTTCCTTTA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGGCAGATGATCTTTTCTGCATCAATGAACTGTTCATTTCCTTTA  985

seq1  AGGACATTTTGTTCTCCAACGAGAACCTAGATTCTCCTATAACAACAGAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATTTTGTTCTCCAACGAGAACCTAGATTCTCCTATAACAACAGAA  1035

seq1  AAGCATTTCTGTGAATCTCATTTGAACTTTTTCTTCTCCAAACAGAGAAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTCTGTGAATCTCATTTGAACTTTTTCTTCTCCAAACAGAGAAA  1085

seq1  CCATATTCTTAAAGCATCCAATCCTATAAGGGCTACCTACTTAAGGTAGA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTCTTAAAGCATCCAATCCTATAAGGGCTACCTACTTAAGGTAGA  1135

seq1  ATTGTGACCCACTACCAATAGATAGAGAATTC  1175
      ||||||||||||||||||||||||||||||||
seq2  ATTGTGACCCACTACCAATAGATAGAGAATTC  1167