BAC Information

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BAC

Clone NameB6Ng01-117G21
Chromosome6 (Build37)6 (Build37)
Map Location 18,835,422 - 18,835,96824,473,070 - 24,474,197
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117G21.bB6Ng01-117G21.g
ACCDH922172DH922173
length1,0031,115
definitionDH922172|Mus musculus domesticus DNA, BAC clone: B6Ng01-117G21, 5' end.DH922173|Mus musculus domesticus DNA, BAC clone: B6Ng01-117G21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,422 - 18,835,968)(24,473,070 - 24,474,197)
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcaggacttgaagttttatcataca
gatcttttcacttcctttgttagagtcacgccgagatattatattattgt
ggctattgagaaggtgtgtttccctaatttctttctcagcctgtttattc
ttt
gaattcctcatctttaggtaatggatactacaaattgaacacatgccagg
atgtgttcagagatgccaggactataggcagaccaccatggacagcagca
gatgtagaatgaagaagcctgagcctaccagagaagttgtttatactgag
gatcacagagcctaaggagtgagtctactccaagctatcaggagcccaga
aggtcatgagtacattccagatgtcagacaatgagctatttacactgttg
ggttttactgttccagtgatctggttctaactgtatcctgtttttctttc
ttggaataggagagtgagtatgtaacttgctgattttattagtgtccaca
attaaagagactgtggatagcatgtgtatgcagtatacatgcatatgtat
gcatggccgcacatgtaagcatgcaggtctgtatggacgtgtgtgcttgt
gtatgtacagaacccaggctgggcatccacctccatctcttcccacgtga
ttcactgaggcagggtcttgtgattgaacctagagtttgcagacaggaat
ggcctagctatagctgactctaaagatcccacctttgccttctgaatgtc
agaactataggtaacttcacaccaacacaacagttaagtggtttctgggg
atgtaaacttggcaagttgaaattttctttttaagaaatttgaaaggatg
tgatctgatttaaactattaattttggcaccattttaattcttaccctct
caaatttatgaatataatacatatattcatctttaatatagcattttatt
aagtttcattctgactcaaattttaaggtttttgaacaagatatggcagg
ggcggggagtgactggagagatggctcagtagttaaagcactgactgctc
ttctagagacttggttctattcccagcatctacacagcagcctacacatc
tggaactccagtcgaggggatgtgacactcttcactgcacaggcacacag
tggtgcatatgcacattgcagccaccactcatataccaatatgaaataat
tggaaccatgttttcatctttcagaatgtagatcgatgcatctattctaa
gaattcaagaaattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835422_18835968
seq2: B6Ng01-117G21.b_47_594 (reverse)

seq1  AATGGAATAGAATTGAAGACCCAGAGATGAACCCACACACCTATGGTCAC  50
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCAC  50

seq1  TTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCAT  100
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTGATCTTCGACAAGGGAGCCAAAACCATCCAGTGGAAGAAAGACAGCAT  100

seq1  TTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCTTGTAGAAGAATGT  150
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  TTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGC  150

seq1  GAATCGATCCATACTTATCTCCATGTACTAAGGTCAAATCTAAGTGGATC  200
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC  200

seq1  AAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGT  250

seq1  GGGGAAAAGCCTTGAAGATATGGGCAGAGGGGAAAAGTTCCTGAACAGAA  300
      |||||||||||||||||||||||||| ||||||||| |||||||||||||
seq2  GGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAA  300

seq1  CAGCAATGGC-TGTGCTGTGAGGTAGAGAATCGACAAATGGGACCTAATG  349
      |||||||||| |||||||| || | |||||| ||||||||||||||||||
seq2  CAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATG  350

seq1  AAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG  399
      |||||||||||||||||||||||||||||||| ||| |||||||||||||
seq2  AAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATAAGACAAAAAG  400

seq1  ACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  449
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACCACCAACAGACTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  450

seq1  GACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAA  499
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACCTCAGAAAA  500

seq1  TCAAATAACCCCATTAATAAATGGGGCTCAGAACTGAACAAAGAATTC  547
      |||||||||||| |||| ||||||||||||||||||||||||||||||
seq2  TCAAATAACCCCCTTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  548

seq1: chr6_24473070_24474197
seq2: B6Ng01-117G21.g_66_1180

seq1  GAATTCCTCATCTTTAGGTAATGGATACTACAAATTGAACACATGCCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCATCTTTAGGTAATGGATACTACAAATTGAACACATGCCAGG  50

seq1  ATGTGTTCAGAGATGCCAGGACTATAGGCAGACCACCATGGACAGCAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTCAGAGATGCCAGGACTATAGGCAGACCACCATGGACAGCAGCA  100

seq1  GATGTAGAATGAAGAAGCCTGAGCCTACCAGAGAAGTTGTTTATACTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAGAATGAAGAAGCCTGAGCCTACCAGAGAAGTTGTTTATACTGAG  150

seq1  GATCACAGAGCCTAAGGAGTGAGTCTACTCCAAGCTATCAGGAGCCCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACAGAGCCTAAGGAGTGAGTCTACTCCAAGCTATCAGGAGCCCAGA  200

seq1  AGGTCATGAGTACATTCCAGATGTCAGACAATGAGCTATTTACACTGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATGAGTACATTCCAGATGTCAGACAATGAGCTATTTACACTGTTG  250

seq1  GGTTTTACTGTTCCAGTGATCTGGTTCTAACTGTATCCTGTTTTTCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTACTGTTCCAGTGATCTGGTTCTAACTGTATCCTGTTTTTCTTTC  300

seq1  TTGGAATAGGAGAGTGAGTATGTAACTTGCTGATTTTATTAGTGTCCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATAGGAGAGTGAGTATGTAACTTGCTGATTTTATTAGTGTCCACA  350

seq1  ATTAAAGAGACTGTGGATAGCATGTGTATGCAGTATACATGCATATGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGAGACTGTGGATAGCATGTGTATGCAGTATACATGCATATGTAT  400

seq1  GCATGGCCGCACATGTAAGCATGCAGGTCTGTATGGACGTGTGTGCTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCCGCACATGTAAGCATGCAGGTCTGTATGGACGTGTGTGCTTGT  450

seq1  GTATGTACAGAACCCAGGCTGGGCATCCACCTCCATCTCTTCCCACGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTACAGAACCCAGGCTGGGCATCCACCTCCATCTCTTCCCACGTGA  500

seq1  TTCACTGAGGCAGGGTCTTGTGATTGAACCTAGAGTTTGCAGACAGGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGAGGCAGGGTCTTGTGATTGAACCTAGAGTTTGCAGACAGGAAT  550

seq1  GGCCTAGCTATAGCTGACTCTAAAGATCCCACCTTTGCCTTCTGAATGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAGCTATAGCTGACTCTAAAGATCCCACCTTTGCCTTCTGAATGTC  600

seq1  AGAACTATAGGTAACTTCACACCAACACAACAGTTAAGTGGTTTCTGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTATAGGTAACTTCACACCAACACAACAGTTAAGTGGTTTCTGGGG  650

seq1  ATGTAAACTTGGCAAGTTGAAATTTTCTTTTTAAGAAATTTGAAAGGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAACTTGGCAAGTTGAAATTTTCTTTTTAAGAAATTTGAAAGGATG  700

seq1  TGATCTGATTTAAACTATTAATTTTGGCACCATTTTAATTCTTACCCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGATTTAAACTATTAATTTTGGCACCATTTTAATTCTTACCCTCT  750

seq1  CAAATTTATGAATATAATACATATATTCATCTTTAATATAGCATTTTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTATGAATATAATACATATATTCATCTTTAATATAGCATTTTATT  800

seq1  AAGTTTCATTCTGACTCAAATTTTAAGGTTTTTGAACAAGATATGGCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCATTCTGACTCAAATTTTAAGGTTTTTGAACAAGATATGGCAGG  850

seq1  GGCGGGGAGTGACTGGAGAGATGGCTCAGTAGTTAAAAGCACTGACTGCC  900
      |||||||||||||||||||||||||||||||||| |||||||||||||| 
seq2  GGCGGGGAGTGACTGGAGAGATGGCTCAGTAGTT-AAAGCACTGACTGCT  899

seq1  CTTCTAGAAGACTTGGGTTCTATTCCCAGCATCTACACAGCAGCCTACAA  950
      ||||||| |||||| ||||||||||||||||||||||||||||||||| |
seq2  CTTCTAG-AGACTT-GGTTCTATTCCCAGCATCTACACAGCAGCCTAC-A  946

seq1  CATCTGGAACCCCAGTCCGAGGGGATGTGACACCTTCTTCACTGGCACCA  1000
      |||||||||| ||||| ||||||||||||||||  |||||||| ||| ||
seq2  CATCTGGAACTCCAGT-CGAGGGGATGTGACAC--TCTTCACT-GCA-CA  991

seq1  GGCACACAAGTGGTGCATATGCACACATGCAGGCAAACCACTCATATACA  1050
      ||||||| |||||||||||||||||  ||||| |  |||||||||||  |
seq2  GGCACAC-AGTGGTGCATATGCACA-TTGCAGCC--ACCACTCATAT--A  1035

seq1  CAAATATGAAATAAATTGAAAACACATGTTTTTCATCTTTCAGGATG-AG  1099
      | |||||||||||| | |||    |||| |||||||||||||| ||| ||
seq2  CCAATATGAAATAATTGGAA---CCATG-TTTTCATCTTTCAGAATGTAG  1081

seq1  ACCGAATGCATCTAGTCTTAG------AGAAATTC  1128
      | || ||||||||| ||| ||      ||||||||
seq2  ATCG-ATGCATCTATTCTAAGAATTCAAGAAATTC  1115