BAC Information

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BAC

Clone NameB6Ng01-117H09
Chromosome6 (Build37)9 (Build37)
Map Location 18,835,442 - 18,835,96893,968,914 - 93,970,059
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117H09.bB6Ng01-117H09.g
ACCDH922195DH922196
length9981,138
definitionDH922195|Mus musculus domesticus DNA, BAC clone: B6Ng01-117H09, 5' end.DH922196|Mus musculus domesticus DNA, BAC clone: B6Ng01-117H09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,442 - 18,835,968)(93,968,914 - 93,970,059)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttcg
ttaggtcccatttttcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttctttga
tccatttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaaa
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttaccacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaatttctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagtttttatcata
cagatctttcacttccttagttagagtcactccgagatattttatattat
ttgtgactattgagaacgtgtgtttccctaatttcttctcagcctgtt
gaattccaattaatcatgccttcaattcaagactgatcattggcctctac
atttgctgtcagctctgtcaaagggtatgcagatgcactggttaggaaga
agcctggctctctttgtcaggcacaggagccagtgatgtctgcacacagg
caattacatctgtcagcttgtatgtcatgaacattttatggggattacag
actgatcttgcataaaaaagaaaaatggatgctcgtttctatatttttct
gagaagccctcctacctcccagtgttctgtctcccattatactgagactc
atatgcaaggatcaatggagtaaagctataggcaagaaaatgagactatg
tttttgtttttttttttttttttaatgaaagaaattctttgctgtctttc
atatccaattccaaggttggtgggagttgggaaaattgtctttgattaca
ctgtctttggttctcagatttttatggttttttttttttttttaaggaaa
aggctatacatggttctttcaagagttctgagatgcactggaagacagta
tgaacactgggaagagaatgaaagtggacagaggctcctgggtgatgtca
atataaaagataattgtacttgggatgtgcttacaaatgcaactggttaa
aaaaagtgacaggagttgattgtcacagggtcctatgtgtaggtttcaaa
gaccattgtctttacatagacaaggaccttggatcaaggaaatattacat
aactggtttgaatccatgtatttagctagaagtaggaaaacattctttgg
gggtcattgattttatattatctctcaatatgaaaatgataatgaaaatt
gatttcatggaattacatctatcttccttaaatattggtggcttcattac
tcaaatgccatgtttcccattggtcatttaatagaggcacttacatagta
atttaagaattaaggtcatgtcattctataccccactagctgtactctaa
acgctaaacaagagtatcatgtagtaagggattgtgtggataggtggagg
cttattctatatggcgtaggatgatcggataggttaattttctttttatt
ggaggacatggccgagagtacctcatcctgtagatccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835442_18835968
seq2: B6Ng01-117H09.b_47_574 (reverse)

seq1  CCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50

seq1  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAAAACCATCCAGTGGAAGAAAGACAGCTTTTTCAACAATTGGTGCTGGC  100

seq1  ACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCT  150
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  ACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCT  150

seq1  CCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200
      || |||||||||||||||||||| |||||||| |||||||||||||||||
seq2  CCTTGTACTAAGGTCAAATCTAAATGGATCAAAGAACTTCACATAAAACC  200

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250

seq1  TGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTG  299
      |||||| ||||||||| ||||||||||||||||||||||| |||||||| 
seq2  TGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  300

seq1  AGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  349
      || | |||||| || ||||||||||||| |||||||||||||||||||||
seq2  AGATCGAGAATTGAAAAATGGGACCTAACGAAACTCCAAAGTTTCTGCAA  350

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  399
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGCAAAAGACACCGTCAATAAGACAAAGAGACCACCAACAGATTGGGAAA  400

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  450

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAA  500

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  527
      ||||||||||||||||||||||||||||
seq2  ATGGGGCTCAGAACTGAACAAAGAATTC  528

seq1: chr9_93968914_93970059
seq2: B6Ng01-117H09.g_66_1203 (reverse)

seq1  GGGATCT-CAGGATTGAGGTACTCTGGGCAATGT-CTCCAATTAAAAAGA  48
      ||||||| ||||| ||||||||||| ||| |||| |||||| ||||||||
seq2  GGGATCTACAGGA-TGAGGTACTCTCGGCCATGTCCTCCAA-TAAAAAGA  48

seq1  TAAATTAAACTAATCAGATCATCCTACGCATTAATTAGAATAAAGCTTCA  98
       ||||||| || ||| |||||||||||||  ||  ||||||||  || ||
seq2  -AAATTAACCT-ATCCGATCATCCTACGCCATA--TAGAATAAGCCTCCA  94

seq1  ACTATCCACA-AATCCCTTTACTACATGATACTCTTGTTTTAGCGTTTTT  147
       ||||||||| |||||| ||||||||||||||||||| |||||||  |||
seq2  CCTATCCACACAATCCC-TTACTACATGATACTCTTG-TTTAGCG--TTT  140

seq1  AGAGTACAGCTAGTGGGGTATAGAATGACATGAACCTTTAGTCTTAAATT  197
      |||||||||||||||||||||||||||||||| ||||| | |||||||||
seq2  AGAGTACAGCTAGTGGGGTATAGAATGACATG-ACCTTAATTCTTAAATT  189

seq1  ACTATGTAAGTGCCTCTATTTAAATGACCAATGGGGAACATGGCATTTGA  247
      |||||||||||||||||| |||||||||||||||| ||||||||||||||
seq2  ACTATGTAAGTGCCTCTA-TTAAATGACCAATGGGAAACATGGCATTTGA  238

seq1  GTAATGAAG-CACCAATATTTAAGGAAGATAGATGTAATTTCATGAAATC  296
      ||||||||| |||||||||||||||||||||||||||||| |||||||||
seq2  GTAATGAAGCCACCAATATTTAAGGAAGATAGATGTAATTCCATGAAATC  288

seq1  AATTTTCATTATCATTTTCATATTGAGAGATAATATAAAATCAATGACCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCATTATCATTTTCATATTGAGAGATAATATAAAATCAATGACCC  338

seq1  TCAAAGAATGTTTTCCTACTTCTAGCTAATTACATGGATTCAAACCAGTT  396
       |||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCAAAGAATGTTTTCCTACTTCTAGCTAAATACATGGATTCAAACCAGTT  388

seq1  ATGTAATATTTCCTTGATCCAAGGTCCTTGTCTATGTAAAGACAATGGTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATATTTCCTTGATCCAAGGTCCTTGTCTATGTAAAGACAATGGTC  438

seq1  TTTGAAACCTACACATAGGACCCTGTGACAATCAACTCCTGTCACTTTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAACCTACACATAGGACCCTGTGACAATCAACTCCTGTCACTTTTT  488

seq1  TTAACCAGTTGCATTTGTAAGCACATCCCAAGTACAATTATCTTTTATAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCAGTTGCATTTGTAAGCACATCCCAAGTACAATTATCTTTTATAT  538

seq1  TGACATCACCCAGGAGCCTCTGTCCACTTTCATTCTCTTCCCAGTGTTCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCACCCAGGAGCCTCTGTCCACTTTCATTCTCTTCCCAGTGTTCA  588

seq1  TACTGTCTTCCAGTGCATCTCAGAACTCTTGAAAGAACCATGTATAGCCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCTTCCAGTGCATCTCAGAACTCTTGAAAGAACCATGTATAGCCT  638

seq1  TTTCCTTAAAAAAAAAAAAAAAACCATAAAAATCTGAGAACCAAAGACAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTAAAAAAAAAAAAAAAACCATAAAAATCTGAGAACCAAAGACAG  688

seq1  TGTAATCAAAGACAATTTTCCCAACTCCCACCAACCTTGGAATTGGATAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCAAAGACAATTTTCCCAACTCCCACCAACCTTGGAATTGGATAT  738

seq1  GAAAGACAGCAAAGAATTTCTTTCATTAAAAAAAAAAAAAAAAACAAAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACAGCAAAGAATTTCTTTCATTAAAAAAAAAAAAAAAAACAAAAA  788

seq1  CATAGTCTCATTTTCTTGCCTATAGCTTTACTCCATTGATCCTTGCATAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTCTCATTTTCTTGCCTATAGCTTTACTCCATTGATCCTTGCATAT  838

seq1  GAGTCTCAGTATAATGGGAGACAGAACACTGGGAGGTAGGAGGGCTTCTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTCAGTATAATGGGAGACAGAACACTGGGAGGTAGGAGGGCTTCTC  888

seq1  AGAAAAATATAGAAACGAGCATCCATTTTTCTTTTTTATGCAAGATCAGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATATAGAAACGAGCATCCATTTTTCTTTTTTATGCAAGATCAGT  938

seq1  CTGTAATCCCCATAAAATGTTCATGACATACAAGCTGACAGATGTAATTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATCCCCATAAAATGTTCATGACATACAAGCTGACAGATGTAATTG  988

seq1  CCTGTGTGCAGACATCACTGGCTCCTGTGCCTGACAAAGAGAGCCAGGCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTGCAGACATCACTGGCTCCTGTGCCTGACAAAGAGAGCCAGGCT  1038

seq1  TCTTCCTAACCAGTGCATCTGCATACCCTTTGACAGAGCTGACAGCAAAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTAACCAGTGCATCTGCATACCCTTTGACAGAGCTGACAGCAAAT  1088

seq1  GTAGAGGCCAATGATCAGTCTTGAATTGAAGGCATGATTAATTGGAATTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGCCAATGATCAGTCTTGAATTGAAGGCATGATTAATTGGAATTC  1138