BAC Information

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BAC

Clone NameB6Ng01-117I10
Chromosome6 (Build37)
Map Location 39,494,975 - 39,606,739
singlet/doubletdoublet
Overlap geneDennd2a, Adck2, Ndufb2, Braf, Fth-ps2
Upstream geneLOC621228, Luc7l2, Klrg2, LOC665180, Hipk2, Tbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601
Downstream geneMrps33, LOC665247, LOC665254, EG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117I10.bB6Ng01-117I10.g
ACCDH922245DH922246
length1,1661,216
definitionDH922245|Mus musculus domesticus DNA, BAC clone: B6Ng01-117I10, 5' end.DH922246|Mus musculus domesticus DNA, BAC clone: B6Ng01-117I10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,494,975 - 39,496,152)(39,605,495 - 39,606,739)
sequence
gaattcaggagggcagtgaaccctgtaacaccgcatgggctgtgttaaga
gccacagccgccgtcacagaaagcagaacttaacaagttcttagatgaga
cttgccataccatttgaacattggtccctttgaagctgtgctgaagttta
gcccctgttctgagatattatggtgaggccttgagagaaccctgaggtgt
tcaggcctctggccttatgaatgaattcatccagtcacacagttagcagg
ctgagccactgaactatctaaagagtggatctactccatgagccagtttc
cctggagacgcagtggtatagtgccttcttagcatgcttgaggccatggg
ctcaaaccccagaaccacaaagcggaaaacaaaaacctcttattaaacag
cttgtaaatttaaaagccagctttggtaggtatccccagctccctgactc
gaccatacaatgtcctgcatcatttcaggattctgacagaaagggcattg
ccagatattgctgaccttgggtcagaaccaagctaccaaaaccctctttt
ctttataacccgctcggcctctggtactgtgttagcaacagaaactgtac
agccatctgacatgatggaaaatctctgtaatcccagcactcagaaacag
aacgtgagcccagcctcagcaataaagcaagcgtcagcctcagagaagga
gccgtaacagatgggctctactgtctggaaataggaaaacttgcaagcta
ggatgctgagaggacacagaagaagacagaagtccggtgagctggaacgg
aaggcacttgcaaaacaggacagaaaaactagctagtgtttgctacccta
ggcaatgtggagggcctgcaggaaagagctgttctcttgtgcacacacta
aggtctgggtggcttgaccagtagtgtagagtaggcagagcagtgagcta
agtgagagagaaagaacagctctgaagggccaggctgagatttgagcata
aatgagatgtctgtgaggaggggcgagcacatgggatctcacatcaccct
ccgctcactgcttctacatgctgtcttagcttaatgtggcattgactttt
tatctatggaaatagattttattttaaatgtgtaataggcagcacgtgat
ggccatagccttgatc
gaattctcccttctcttctttcttttcccctcacctctctggaatcagaa
gtccagccctactctctcctctgctcagccactggctatcagcttttatt
gacaaataagaggataaatgagaacaatgtttacacaacattgagtcagg
agatactgagaatagccatgtctgaattgcaggcagatatggggacagaa
aaatcagcatttgaataatacaaggataatctttacacagtgttcagtaa
cttgcctacagttactagttctgacaacaactataacagtcctaagacaa
gtatgggcataccaagaaattttctaaaattaatacattacccagtttag
aatataaagagataattactttctttttatcacttacagaaagttactgt
gcttcaaaaaaattttaaatagtgtaacctaaaacttaagcctaaattat
agtagttttctaaagagtgttagaattaaaattctgtttatttttaattt
taaaattttttaagtttagttttaagaaggtatgtggaagggtcagtaca
aatatatacctgtgggagaaagccaattaggtgatggccaagatccttca
taggttagttataaattgcctacttcaaggaaagagtccacaatatgcag
gtatggctttataagttttccaaatgatgacaattaggaatatactagtt
aagttgagcaaaatcagaacaaagaatatacatgccacctaatccagact
tgtgtaggatgggcccactcttctttggaaagacagtaatgagaagcaaa
attatagttagaggattgcttttgttaagcattgaattaaaacatacaga
tgggtacaataatgaaatattgctcagagttaccatatacttgccttcaa
gggtagagaagttaactttgaactcaggcataccttcaccctccagatgg
tattaatacatcacatggatttgtgtttcaggccctcttcttttaccaga
ttaaatacagggttttatttcttcttgtttctgatcactgtcctctgaaa
acagagttttatttctacccaggtcaattttctgtcatagtttactgaag
tacattcaggagtagttatttcccttctctctcatgctaggtcacattta
atggtgacattcttaacattcagtaatcaggcttcgatagcggaaataag
gcacatgtcctaagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_39494975_39496152
seq2: B6Ng01-117I10.b_43_1208

seq1  GAATTCAGGAGGGCAGTGAACCCTGTAACACCGCATGGGCTGTGTTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGGGCAGTGAACCCTGTAACACCGCATGGGCTGTGTTAAGA  50

seq1  GCCACAGCCGCCGTCACAGAAAGCAGAACTTAACAAGTTCTTAGATGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGCCGCCGTCACAGAAAGCAGAACTTAACAAGTTCTTAGATGAGA  100

seq1  CTTGCCATACCATTTGAACATTGGTCCCTTTGAAGCTGTGCTGAAGTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCATACCATTTGAACATTGGTCCCTTTGAAGCTGTGCTGAAGTTTA  150

seq1  GCCCCTGTTCTGAGATATTATGGTGAGGCCTTGAGAGAACCCTGAGGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGTTCTGAGATATTATGGTGAGGCCTTGAGAGAACCCTGAGGTGT  200

seq1  TCAGGCCTCTGGCCTTATGAATGAATTCATCCAGTCACACAGTTAGCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCTCTGGCCTTATGAATGAATTCATCCAGTCACACAGTTAGCAGG  250

seq1  CTGAGCCACTGAACTATCTAAAGAGTGGATCTACTCCATGAGCCAGTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCACTGAACTATCTAAAGAGTGGATCTACTCCATGAGCCAGTTTC  300

seq1  CCTGGAGACGCAGTGGTATAGTGCCTTCTTAGCATGCTTGAGGCCATGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGACGCAGTGGTATAGTGCCTTCTTAGCATGCTTGAGGCCATGGG  350

seq1  CTCAAACCCCAGAACCACAAAGCGGAAAACAAAAACCTCTTATTAAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACCCCAGAACCACAAAGCGGAAAACAAAAACCTCTTATTAAACAG  400

seq1  CTTGTAAATTTAAAAGCCAGCTTTGGTAGGTATCCCCAGCTCCCTGACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAATTTAAAAGCCAGCTTTGGTAGGTATCCCCAGCTCCCTGACTC  450

seq1  GACCATACAATGTCCTGCATCATTTCAGGATTCTGACAGAAAGGGCATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATACAATGTCCTGCATCATTTCAGGATTCTGACAGAAAGGGCATTG  500

seq1  CCAGATATTGCTGACCTTGGGTCAGAACCAAGCTACCAAAACCCTCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATATTGCTGACCTTGGGTCAGAACCAAGCTACCAAAACCCTCTTTT  550

seq1  CTTTATAACCCGCTCGGCCTCTGGTACTGTGTTAGCAACAGAAACTGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATAACCCGCTCGGCCTCTGGTACTGTGTTAGCAACAGAAACTGTAC  600

seq1  AGCCATCTGACATGATGGAAAATCTCTGTAATCCCAGCACTCAGAAACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCTGACATGATGGAAAATCTCTGTAATCCCAGCACTCAGAAACAG  650

seq1  AACGTGAGCCCAGCCTCAGCAATAAAGCAAGCGTCAGCCTCAGAGAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGAGCCCAGCCTCAGCAATAAAGCAAGCGTCAGCCTCAGAGAAGGA  700

seq1  GCCGTAACAGATGGGCTCTACTGTCTGGAAATAGGAAAACTTGCAAGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTAACAGATGGGCTCTACTGTCTGGAAATAGGAAAACTTGCAAGCTA  750

seq1  GGATGCTGAGAGGACACAGAAGAAGACAGAAGTCCGGTGAGCTGGAACGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTGAGAGGACACAGAAGAAGACAGAAGTCCGGTGAGCTGGAACGG  800

seq1  AAGGCACTTGCAAAACAGGACAGAAAAACTAGCTAGTGTTTGCTACCCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACTTGCAAAACAGGACAGAAAAACTAGCTAGTGTTTGCTACCCTA  850

seq1  GGCAATGTGGAGGGCCTGCAGGAAAGAGCTGTTCTCTTGTGCACACACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATGTGGAGGGCCTGCAGGAAAGAGCTGTTCTCTTGTGCACACACTA  900

seq1  AGGTCTGGGTGGCTTGACCAGTAGTGTAGAGTAGGCAGAGCAGTGAGCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGGGTGGCTTGACCAGTAGTGTAGAGTAGGCAGAGCAGTGAGCTA  950

seq1  AGTGAGAGAGAAAGAACAGCTCTGAAGGGGCCAGGCTGAGATTTGAGCAT  1000
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGTGAGAGAGAAAGAACAGCTCTGAA-GGGCCAGGCTGAGATTTGAGCAT  999

seq1  AAATGAGATGTCTGTGA-GAGGGGCGAGCCACATGGGATCTCACATCACC  1049
      ||||||||||||||||| |||||||||| |||||||||||||||||||||
seq2  AAATGAGATGTCTGTGAGGAGGGGCGAG-CACATGGGATCTCACATCACC  1048

seq1  CTCCGCTCACTGCTTCTAACATTGCTGTCTCTAGGCCTTATATGT-GCAT  1098
      ||||||||||||||||| ||| |||||||| |||  |||| |||| ||||
seq2  CTCCGCTCACTGCTTCT-ACA-TGCTGTCT-TAG--CTTA-ATGTGGCAT  1092

seq1  TGGACTTTTTATCTTATGAAAATAAGATTTTATTTTAAATTGTGTATATA  1148
      | ||||||||||| |||| |||| ||||||||||||||| |||||| |||
seq2  T-GACTTTTTATC-TATGGAAAT-AGATTTTATTTTAAA-TGTGTA-ATA  1137

seq1  GGCAGCACGTGATGG-CATAGGCCTTTGATC  1178
      ||||||||||||||| |||||  | ||||||
seq2  GGCAGCACGTGATGGCCATAG--CCTTGATC  1166

seq1: chr6_39605495_39606739
seq2: B6Ng01-117I10.g_68_1283 (reverse)

seq1  GTCTTAGGACAATAGTGCCTTTAATTCAGGACTAAAATCTGGGAAAGCCT  50
      |||||||||||   ||||| ||| ||| |  ||   |||     ||||||
seq2  GTCTTAGGACA--TGTGCC-TTATTTCCG--CT---ATC----GAAGCCT  38

seq1  GAATTAACTAGAATGTATAGAATAGTCTAATTAATATAATATGTGACCTA  100
      ||  | ||| ||||||  ||||| |||     |  || | ||||||||||
seq2  GA--TTACT-GAATGTTAAGAAT-GTC-----ACCATTAAATGTGACCTA  79

seq1  GCATTGAGAGAGAGAGGAAATAAACTACTCCTGAAATGTAC-TCAGTAAA  149
      ||| |||||||||  |||||| ||||||||||| ||||||| |||||  |
seq2  GCA-TGAGAGAGAAGGGAAAT-AACTACTCCTG-AATGTACTTCAGT--A  124

seq1  AACTATGACAGAAATATGAACTGGGTAAGAAATAAAAACTCTGTTTTCAG  199
      ||||||||||||||  ||| |||||| |||||| ||||||||||||||||
seq2  AACTATGACAGAAAATTGACCTGGGT-AGAAAT-AAAACTCTGTTTTCAG  172

seq1  AGGACAGTGATTCAGAAACAAGGAGAAATAAAACCCTGTATTTAATCTGG  249
      |||||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  AGGACAGTGA-TCAGAAACAAGAAGAAATAAAACCCTGTATTTAATCTGG  221

seq1  TAAAAGAAGAGGGCTTGAAACACAAAATCCATGTGATGTATTAATACCAT  299
      |||||||||||||| |||||||| ||||||||||||||||||||||||||
seq2  TAAAAGAAGAGGGCCTGAAACAC-AAATCCATGTGATGTATTAATACCAT  270

seq1  CTGGAGGGTGAAGGTATGCCTGAGTTCAAAGTTAACTTCTCTACCCTTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGGTGAAGGTATGCCTGAGTTCAAAGTTAACTTCTCTACCCTTGA  320

seq1  AGGCAAGTATATGGTAACTCTGAGCAATATTTCATTATTGTACCCATCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGTATATGGTAACTCTGAGCAATATTTCATTATTGTACCCATCTG  370

seq1  TATGTTTTAATTCAATGCTTAACAAAAGCAATCCTCTAACTATAATTTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTAATTCAATGCTTAACAAAAGCAATCCTCTAACTATAATTTTG  420

seq1  CTTCTCATTACTGTCTTTCCAAAGAAGAGTGGGCCCATCCTACACAAGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCATTACTGTCTTTCCAAAGAAGAGTGGGCCCATCCTACACAAGTC  470

seq1  TGGATTAGGTGGCATGTATATTCTTTGTTCTGATTTTGCTCAACTTAACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTAGGTGGCATGTATATTCTTTGTTCTGATTTTGCTCAACTTAACT  520

seq1  AGTATATTCCTAATTGTCATCATTTGGAAAACTTATAAAGCCATACCTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATTCCTAATTGTCATCATTTGGAAAACTTATAAAGCCATACCTGC  570

seq1  ATATTGTGGACTCTTTCCTTGAAGTAGGCAATTTATAACTAACCTATGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTGGACTCTTTCCTTGAAGTAGGCAATTTATAACTAACCTATGAA  620

seq1  GGATCTTGGCCATCACCTAATTGGCTTTCTCCCACAGGTATATATTTGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTGGCCATCACCTAATTGGCTTTCTCCCACAGGTATATATTTGTA  670

seq1  CTGACCCTTCCACATACCTTCTTAAAACTAAACTTAAAAAATTTTAAAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCTTCCACATACCTTCTTAAAACTAAACTTAAAAAATTTTAAAAT  720

seq1  TAAAAATAAACAGAATTTTAATTCTAACACTCTTTAGAAAACTACTATAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAAACAGAATTTTAATTCTAACACTCTTTAGAAAACTACTATAA  770

seq1  TTTAGGCTTAAGTTTTAGGTTACACTATTTAAAATTTTTTTGAAGCACAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGCTTAAGTTTTAGGTTACACTATTTAAAATTTTTTTGAAGCACAG  820

seq1  TAACTTTCTGTAAGTGATAAAAAGAAAGTAATTATCTCTTTATATTCTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTCTGTAAGTGATAAAAAGAAAGTAATTATCTCTTTATATTCTAA  870

seq1  ACTGGGTAATGTATTAATTTTAGAAAATTTCTTGGTATGCCCATACTTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTAATGTATTAATTTTAGAAAATTTCTTGGTATGCCCATACTTGT  920

seq1  CTTAGGACTGTTATAGTTGTTGTCAGAACTAGTAACTGTAGGCAAGTTAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGACTGTTATAGTTGTTGTCAGAACTAGTAACTGTAGGCAAGTTAC  970

seq1  TGAACACTGTGTAAAGATTATCCTTGTATTATTCAAATGCTGATTTTTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACTGTGTAAAGATTATCCTTGTATTATTCAAATGCTGATTTTTCT  1020

seq1  GTCCCCATATCTGCCTGCAATTCAGACATGGCTATTCTCAGTATCTCCTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCATATCTGCCTGCAATTCAGACATGGCTATTCTCAGTATCTCCTG  1070

seq1  ACTCAATGTTGTGTAAACATTGTTCTCATTTATCCTCTTATTTGTCAATA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATGTTGTGTAAACATTGTTCTCATTTATCCTCTTATTTGTCAATA  1120

seq1  AAAGCTGATAGCCAGTGGCTGAGCAGAGGAGAGAGTAGGGCTGGACTTCT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGATAGCCAGTGGCTGAGCAGAGGAGAGAGTAGGGCTGGACTTCT  1170

seq1  GATTCCAGAGAGGTGAGGGGAAAAGAAAGAAGAGAAGGGAGAATTC  1245
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCAGAGAGGTGAGGGGAAAAGAAAGAAGAGAAGGGAGAATTC  1216