BAC Information

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BAC

Clone NameB6Ng01-117P05
Chromosome6 (Build37)
Map Location 55,178,156 - 55,329,652
singlet/doubletdoublet
Overlap geneC330043M08Rik, Aqp1, Ghrhr
Upstream geneChn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt
Downstream geneAdcyap1r1, LOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357, Pde1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117P05.bB6Ng01-117P05.g
ACCDH922557DH922558
length1,0391,023
definitionDH922557|Mus musculus domesticus DNA, BAC clone: B6Ng01-117P05, 5' end.DH922558|Mus musculus domesticus DNA, BAC clone: B6Ng01-117P05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,328,608 - 55,329,652)(55,178,156 - 55,178,895)
sequence
gaattcctccctttcccagaagatggtgggaaggttctgtgaggtatata
cacgttcttaaccacaaggacagaagagtcctcttgtcccatggcttggg
ttctggactggtgtagtctgtctctgttctccaggaaagctctgctgagt
ggaatgatggacctctacatcctaagggcaggaagtatgacacccacccc
cttcccataagagacaggaaggacagcaggtgaagtggacgatgaggtgt
tccccaccctcatcagtatggtaccacctccctttctccagtgtcatcat
taatcctgcactgggaggttggtgctatcagtcatcgttcaagatgacta
aatttttcagggtaacactagaagattgaaatccaggatagtccatcacc
gaaccagtaatgtgcaaaccagaaggaaccacatgctgtgcgtccctgcc
ttagctaggccactcacctgtgtctgagccgaagtgagagaagaattcag
ggcaggggagagagacccactggccagagcctgtcgggggccagcacagc
agcccatcccaggtcccagggcatcctaggtggagaaggaggagacatgg
ggtaacctatgagggaggagattctgaatggcagtgctgaaggagatgtc
aggaccagggacatccccaccccttcatacccagggaggtgttgttggtc
ccctctgccgcctgaagacatgcaagctcatcgtctctcagctgagtgat
gaagtcacattctaggtggaggtgacccagtgtctatgggaaattgtgac
agaatgagccaagcccactggaggccttgtgcgctctagttgtagtgacc
tgaagatggagggagaccaagcctggtacatttctgtgccctagttctga
gaaaggcccatttgccccacagatatcaaggaatgtttgataagcagtgg
ggcataagcagaggagtggggcatagaggcagatgtcagaatggagaggg
gaggatgaaaaagaggaaggaaggagaggagaagaaaga
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atttatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccccaatcc
taggattcccaagatataaggtacaatttgctaaacacatgaaactcaaa
aagaatgaagactgaagtatggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagagacaaagtttgaagctgagatga
aaggatggaccatgtagagactgccatatccagggcattgtgcacttttg
agggcggcacactgactgctcctcctgcactgcagctcttttagagattt
ttctttctttggcttctaacggtttggatgccgttaccccagtgtggttt
tcattgatgatatttgggatacatcaacttttctgaaattgagatttaga
ctcttgatcggtttggaaaatcatcaactgtaacattgtaaatactgctt
tgtttcttccttctttcttcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_55328608_55329652
seq2: B6Ng01-117P05.b_49_1087 (reverse)

seq1  TCTTTCTTCTCCTCTCCTTCCTTCCTCTTTTTTCATTCCTCCCCTCTCCT  50
      ||||||||||||||||||||||||||| ||||||| ||||||||||||| 
seq2  TCTTTCTTCTCCTCTCCTTCCTTCCTC-TTTTTCA-TCCTCCCCTCTCCA  48

seq1  TTCTGAACATCTGCCCTCTATGCCCCACTCCTCCTTCCTTATGCCCCACT  100
      ||||| ||||||| |||||||||||||||||||  | |||||||||||||
seq2  TTCTG-ACATCTG-CCTCTATGCCCCACTCCTC--TGCTTATGCCCCACT  94

seq1  GCTTATCAAACATTCCTTGATATCTGTGGGGCAAATGGGCCTTTCTCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATCAAACATTCCTTGATATCTGTGGGGCAAATGGGCCTTTCTCAGA  144

seq1  ACTAGGGCACAGAAATGTACCAGGCTTGGTCTCCCTCCATCTTCAGGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGGCACAGAAATGTACCAGGCTTGGTCTCCCTCCATCTTCAGGTCA  194

seq1  CTACAACTAGAGCGCACAAGGCCTCCAGTGGGCTTGGCTCATTCTGTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAACTAGAGCGCACAAGGCCTCCAGTGGGCTTGGCTCATTCTGTCAC  244

seq1  AATTTCCCATAGACACTGGGTCACCTCCACCTAGAATGTGACTTCATCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCCATAGACACTGGGTCACCTCCACCTAGAATGTGACTTCATCAC  294

seq1  TCAGCTGAGAGACGATGAGCTTGCATGTCTTCAGGCGGCAGAGGGGACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGAGAGACGATGAGCTTGCATGTCTTCAGGCGGCAGAGGGGACCA  344

seq1  ACAACACCTCCCTGGGTATGAAGGGGTGGGGATGTCCCTGGTCCTGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACCTCCCTGGGTATGAAGGGGTGGGGATGTCCCTGGTCCTGACAT  394

seq1  CTCCTTCAGCACTGCCATTCAGAATCTCCTCCCTCATAGGTTACCCCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCAGCACTGCCATTCAGAATCTCCTCCCTCATAGGTTACCCCATG  444

seq1  TCTCCTCCTTCTCCACCTAGGATGCCCTGGGACCTGGGATGGGCTGCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCCTTCTCCACCTAGGATGCCCTGGGACCTGGGATGGGCTGCTGT  494

seq1  GCTGGCCCCCGACAGGCTCTGGCCAGTGGGTCTCTCTCCCCTGCCCTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCCCCGACAGGCTCTGGCCAGTGGGTCTCTCTCCCCTGCCCTGAA  544

seq1  TTCTTCTCTCACTTCGGCTCAGACACAGGTGAGTGGCCTAGCTAAGGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCTCACTTCGGCTCAGACACAGGTGAGTGGCCTAGCTAAGGCAG  594

seq1  GGACGCACAGCATGTGGTTCCTTCTGGTTTGCACATTACTGGTTCGGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGCACAGCATGTGGTTCCTTCTGGTTTGCACATTACTGGTTCGGTGA  644

seq1  TGGACTATCCTGGATTTCAATCTTCTAGTGTTACCCTGAAAAATTTAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTATCCTGGATTTCAATCTTCTAGTGTTACCCTGAAAAATTTAGTC  694

seq1  ATCTTGAACGATGACTGATAGCACCAACCTCCCAGTGCAGGATTAATGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGAACGATGACTGATAGCACCAACCTCCCAGTGCAGGATTAATGAT  744

seq1  GACACTGGAGAAAGGGAGGTGGTACCATACTGATGAGGGTGGGGAACACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGGAGAAAGGGAGGTGGTACCATACTGATGAGGGTGGGGAACACC  794

seq1  TCATCGTCCACTTCACCTGCTGTCCTTCCTGTCTCTTATGGGAAGGGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCGTCCACTTCACCTGCTGTCCTTCCTGTCTCTTATGGGAAGGGGGT  844

seq1  GGGTGTCATACTTCCTGCCCTTAGGATGTAGAGGTCCATCATTCCACTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTCATACTTCCTGCCCTTAGGATGTAGAGGTCCATCATTCCACTCA  894

seq1  GCAGAGCTTTCCTGGAGAACAGAGACAGACTACACCAGTCCAGAACCCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCTTTCCTGGAGAACAGAGACAGACTACACCAGTCCAGAACCCAA  944

seq1  GCCATGGGACAAGAGGACTCTTCTGTCCTTGTGGTTAAGAACGTGTATAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGGACAAGAGGACTCTTCTGTCCTTGTGGTTAAGAACGTGTATAT  994

seq1  ACCTCACAGAACCTTCCCACCATCTTCTGGGAAAGGGAGGAATTC  1045
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACAGAACCTTCCCACCATCTTCTGGGAAAGGGAGGAATTC  1039

seq1: chr6_55178156_55178895
seq2: B6Ng01-117P05.g_356_1089

seq1  CTCTCCTGGGCATTTATCCAGAAGATGCCCCAACTGGTAAGAAGGACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTGGGCATTTATCCAGAAGATGCCCCAACTGGTAAGAAGGACACA  50

seq1  TGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAA  100

seq1  AGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACA  150

seq1  TCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAA  200

seq1  TTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAAC  250

seq1  ACATTCACAAAGAAACTCACACAATATGTACTCACTGATAAGTGGATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCACAAAGAAACTCACACAATATGTACTCACTGATAAGTGGATATT  300

seq1  AGCCCCAATCCTAGGATTCCCAAGATATAAGGTACAATTTGCTAAACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCAATCCTAGGATTCCCAAGATATAAGGTACAATTTGCTAAACACA  350

seq1  TGAAACTCAAAAAGAATGAAGACTGAAGTATGGACACTATGCCCCTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTCAAAAAGAATGAAGACTGAAGTATGGACACTATGCCCCTCCTT  400

seq1  AGAAGTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGA  450

seq1  AGCTGAGATGAAAGGATGGACCATGTAGAGACTGCCATATCCAGGGCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGATGAAAGGATGGACCATGTAGAGACTGCCATATCCAGGGCATT  500

seq1  GTGCACTTTTGAGGGCGGCACACTGACTGCTCCTCCTGCACTGCAGCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACTTTTGAGGGCGGCACACTGACTGCTCCTCCTGCACTGCAGCTCT  550

seq1  TTTAGGAGATTTTTCTTTCTTTGGCTTCTAACGGTTTGGATGCCGTTACC  600
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTA-GAGATTTTTCTTTCTTTGGCTTCTAACGGTTTGGATGCCGTTACC  599

seq1  CCAGTGTGGTTTTCATTGATGATACTTTGGGATACATCAACTTTTCTGAA  650
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCAGTGTGGTTTTCATTGATGATA-TTTGGGATACATCAACTTTTCTGAA  648

seq1  ATTGAGGATTTAGACTCTTGATCGGTTTTGGAAAAATCATCAACTGTTAA  700
      ||||| ||||||||||||||||||||||  | |||||||||||||| |||
seq2  ATTGA-GATTTAGACTCTTGATCGGTTT--GGAAAATCATCAACTG-TAA  694

seq1  CATTGTAAATACTGCTTT-TGTTTTCCTTCCTTCCTTCCTT  740
      |||||||||||||||||| | | |||||| ||| |||||||
seq2  CATTGTAAATACTGCTTTGTTTCTTCCTT-CTTTCTTCCTT  734