BAC Information

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BAC

Clone NameB6Ng01-117P16
Chromosome6 (Build37)
Map Location 76,249,190 - 76,418,475
singlet/doubletdoublet
Overlap geneLOC668153
Upstream geneLOC100042942, LOC668143, EG668145, EG546907, LOC100042952
Downstream geneEG668155, LOC100042956, Ctnna2, Lrrtm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117P16.bB6Ng01-117P16.g
ACCDH922579DH922580
length1,1461,153
definitionDH922579|Mus musculus domesticus DNA, BAC clone: B6Ng01-117P16, 5' end.DH922580|Mus musculus domesticus DNA, BAC clone: B6Ng01-117P16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,249,190 - 76,250,346)(76,417,321 - 76,418,475)
sequence
gaattcctggaacagagtttgtatacatagtttcacatgtagtaggtacc
ccccactatataacatgttatacttcatactcatccagtgccattcactg
gccttaggaagttattacttcatgcttatagcttttagatatctatctgt
ccgtctgcctgtctatccatccatccatccaaccatccatccatctattc
gtctgtttgtccatccatctgtctatgtatccgtctatctgatacccaga
ctgtgttttttagttttgaaatttcaagaacatgtgttcatattataacc
atagtctgcttttccattctttgaatataaaatattacatttgttcttag
agatttatttatttttattttgttttataaagcttttgcctacatgtgta
ttgtgtgtaccagatgtgtttctgtttctgtggaaggaagaaaagggcaa
aagaaaagaaatgcacttaaccattgacccgtctttcaagtcctgatttt
cttaatgatttctcaaaattggggagagacagacaaaagtttaaaaaaaa
aaaaaaagactattaagggaagccagcattatataaaacacattcagtcc
actccccaaggaacacaataacattcttttgacatttctaccccagtctt
tatagtagttagtgggaatagagaaaatacattgattttgttagattaaa
taaaaatacaacgatctcttagcccatttggggcatttgaaattattata
gtcccttagcctattttccccacattttttatttttccagtgtgttccta
gtcacaaaacttttatcacagataagaatacacagagatcacagtcttga
agcaaatatatagaaacatcaattggaccaagaatgcttttataaatgac
atcatgtgcattatgactgaaataaattctattccaagcattggtctgtc
tggtcccatatgtaggatatacaacttcaagagcccgtgacaacttcatc
agtagagtcaactcttctcttctgggtgcatgtcataagcatcgttagtc
tgtcagcaaaagatcaagattgtgcttaaaatgactactcgtgcaactct
gttgatttttatgtccataaacatttattgatgcatcttccactca
gaattcctgagccttgatactaggttctctgtgggagctcgataaatatt
cattgacggggatggtaatgaatactagatttttttggctctctgctttc
tgactttaatccagccatttcctcctctcctccctgggggaactggcaat
ctgtttaaagcatgtttgcactttggaatcaggaggagaagctagcataa
ttattagcttccagtaactcccagactgtcagttaattctcaggtcttgc
cattttctctactctacccagagacctaagtttctatataaatgaattac
acaccaccctggaagatttacttcagtgatgaaaggctagaggactccct
gatctctttccaagcacactgttgtacagatgcccgatttcatccacttt
gctgtgaccattttgagaaaaacttgattagttaccagatctgttaagag
ctacgtggaatactccacaacagtcagttggggttcagtttactaacctg
caaaatgatgggcttatataatgtgtctgttttctatcctcttaaactga
ataaaaacagaaaagtaatcaaatacttatatagattaaaatatgtactg
atgttacaagaccactgatctcattatttggataaaaagataaatgagtc
agatattgtacttaatgaatatgaaaacataaagaagaaagtaatttctt
gatgtttatgaagaatcatgaaattacagaggaatggaccatctatgtgt
tcccactttgggtaagcaactgaaactaccctgtaaatattttacatgcg
tattgctaagaatggctatacctaaggaactgcaattttgcagagtttta
aagcactgtattagttatttttctcatgactgtgacacagttttgacaaa
aaaaaaaacttaaggaagaaaatattcattttgggatccactgcctgaga
tcttgcccataatggcagtcgaagatcagtgataggaatggtgaaatacc
tggtcacattccatctacaggatgctggtctatcagcttgctttctcttt
tctaccactctaaagtcttgcgcatcactgcgcctattcacattcagaga
tggttctttattcaagtggactcatcaatacctttatagacacttcagag
atg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_76249190_76250346
seq2: B6Ng01-117P16.b_49_1194

seq1  GAATTCCTGGAACAGAGTTTGTATACATAGTTTCACATGTAGTAGGTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGAACAGAGTTTGTATACATAGTTTCACATGTAGTAGGTACC  50

seq1  CCCCACTATATAACATGTTATACTTCATACTCATCCAGTGCCATTCACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTATATAACATGTTATACTTCATACTCATCCAGTGCCATTCACTG  100

seq1  GCCTTAGGAAGTTATTACTTCATGCTTATAGCTTTTAGATATCTATCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAGGAAGTTATTACTTCATGCTTATAGCTTTTAGATATCTATCTGT  150

seq1  CCGTCTGCCTGTCTATCCATCCATCCATCCAACCATCCATCCATCTATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCTGCCTGTCTATCCATCCATCCATCCAACCATCCATCCATCTATTC  200

seq1  GTCTGTTTGTCCATCCATCTGTCTATGTATCCGTCTATCTGATACCCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTTGTCCATCCATCTGTCTATGTATCCGTCTATCTGATACCCAGA  250

seq1  CTGTGTTTTTTAGTTTTGAAATTTCAAGAACATGTGTTCATATTATAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTTTTAGTTTTGAAATTTCAAGAACATGTGTTCATATTATAACC  300

seq1  ATAGTCTGCTTTTCCATTCTTTGAATATAAAATATTACATTTGTTCTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTGCTTTTCCATTCTTTGAATATAAAATATTACATTTGTTCTTAG  350

seq1  AGATTTATTTATTTTTATTTTGTTTTATAAAGCTTTTGCCTACATGTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATTTATTTTTATTTTGTTTTATAAAGCTTTTGCCTACATGTGTA  400

seq1  TTGTGTGTACCAGATGTGTTTCTGTTTCTGTGGAAGGAAGAAAAGGGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTACCAGATGTGTTTCTGTTTCTGTGGAAGGAAGAAAAGGGCAA  450

seq1  AAGAAAAGAAATGCACTTAACCATTGACCCGTCTTTCAAGTCCTGATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGAAATGCACTTAACCATTGACCCGTCTTTCAAGTCCTGATTTT  500

seq1  CTTAATGATTTCTCAAAATTGGGGAGAGACAGACAAAAGTTTAAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGATTTCTCAAAATTGGGGAGAGACAGACAAAAGTTTAAAAAAAA  550

seq1  AAAAAAAGACTATTAAGGGAAGCCAGCATTATATAAAACACATTCAGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGACTATTAAGGGAAGCCAGCATTATATAAAACACATTCAGTCC  600

seq1  ACTCCCCAAGGAACACAATAACATTCTTTTGACATTTCTACCCCAGTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCAAGGAACACAATAACATTCTTTTGACATTTCTACCCCAGTCTT  650

seq1  TATAGTAGTTAGTGGGAATAGAGAAAATACATTGATTTTGTTAGATTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTAGTTAGTGGGAATAGAGAAAATACATTGATTTTGTTAGATTAAA  700

seq1  TAAAAATACAACGATCTCTTAGCCCATTTGGGGCATTTGAAATTATTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATACAACGATCTCTTAGCCCATTTGGGGCATTTGAAATTATTATA  750

seq1  GTCCCTTAGCCTATTTTCCCCACATTTTTTATTTTTCCAGTGTGTTCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTAGCCTATTTTCCCCACATTTTTTATTTTTCCAGTGTGTTCCTA  800

seq1  GTCACAAAACTTTTATCACAGATAAGAATACACAGAGATCACAGTCTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAAAACTTTTATCACAGATAAGAATACACAGAGATCACAGTCTTGA  850

seq1  AGCAAATATATAGAAACATCAATTGGACCAAGAATGCTTTTATAAATGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATATATAGAAACATCAATTGGACCAAGAATGCTTTTATAAATGAC  900

seq1  ATCATGTGCATTATGACTGAAATAAATTCTATTCCAAGCATTGGTCTGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTGCATTATGACTGAAATAAATTCTATTCCAAGCATTGGTCTGTC  950

seq1  TGGTCCCATATGTAGGATATACAACTTCAAGAGCCCGTGACAACTTCATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCATATGTAGGATATACAACTTCAAGAGCCCGTGACAACTTCATC  1000

seq1  AGTAGAGTTCAACTC-TCTCTTCTGGGTGCATGTCATAAGCAATCCGTTA  1049
      ||||||| ||||||| ||||||||||||||||||||||||||   |||||
seq2  AGTAGAG-TCAACTCTTCTCTTCTGGGTGCATGTCATAAGCA--TCGTTA  1047

seq1  GTCTGTCAGCAAAAAGATCAAGA-TGTGCTTAAAATGACTTACTCTGTGC  1098
      |||||||||| |||||||||||| ||||||||||||||| ||||| ||||
seq2  GTCTGTCAGC-AAAAGATCAAGATTGTGCTTAAAATGAC-TACTC-GTGC  1094

seq1  AAACTCTGTTGATTTTTATGTCAATTAAACCATTTTTAATGTGATGCATC  1148
       ||||||||||||||||||||| ||  || ||||| |    |||||||||
seq2  -AACTCTGTTGATTTTTATGTCCAT--AAACATTTAT----TGATGCATC  1137

seq1  TTCTACTCA  1157
      ||| |||||
seq2  TTCCACTCA  1146

seq1: chr6_76417321_76418475
seq2: B6Ng01-117P16.g_70_1222 (reverse)

seq1  CATCTCTGGATGTGTCTATAAAGGTATTGATAGAAAGGTTCACCTGAAAT  50
      ||||||| || |||||||||||||||||||| ||   || ||| || |||
seq2  CATCTCT-GAAGTGTCTATAAAGGTATTGAT-GA---GTCCACTTG-AAT  44

seq1  AAAAGACCCAATCTGAATGTGGATA-GCGCAAGTGATGCGGCAAGACTTT  99
      |||  |||   |||||||||| ||| |||| |||||||| ||||||||||
seq2  AAAGAACCATCTCTGAATGTGAATAGGCGC-AGTGATGC-GCAAGACTTT  92

seq1  AGAGTGGTAAGAAAGGAGAAAGCAAGCTGATAGACCAGCAT-CTGTAGAT  148
      |||||||| ||||| |||||||||||||||||||||||||| ||||||||
seq2  AGAGTGGT-AGAAAAGAGAAAGCAAGCTGATAGACCAGCATCCTGTAGAT  141

seq1  GGAATGTGACCAGGTATTTCA-CATTCCTATCACTGATCTTCGACTGCCA  197
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGAATGTGACCAGGTATTTCACCATTCCTATCACTGATCTTCGACTGCCA  191

seq1  TTATGGGCAAGATCTCAGGCAGT-GAT-CCAAAATGAATATTTTCTTCCT  245
      ||||||||||||||||||||||| ||| ||||||||||||||||||||||
seq2  TTATGGGCAAGATCTCAGGCAGTGGATCCCAAAATGAATATTTTCTTCCT  241

seq1  TAAG-TTTTTTTTTTGTCAAAACTGTGTCACAGTCATGAGAAAAATAACT  294
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTTTTTTTTTGTCAAAACTGTGTCACAGTCATGAGAAAAATAACT  291

seq1  AATACAGTGCTTTAAAACTCTGC-AAATTGCAGTTCCTTAGGTATAGCCA  343
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AATACAGTGCTTTAAAACTCTGCAAAATTGCAGTTCCTTAGGTATAGCCA  341

seq1  TTCTTAGCAATACGCATGTAAAATATTTACAGGGTAGTTTCAGTTGCTTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGCAATACGCATGTAAAATATTTACAGGGTAGTTTCAGTTGCTTA  391

seq1  CCCAAAGTGGGAACACATAGATGGTCCATTCCTCTGTAATTTCATGATTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGTGGGAACACATAGATGGTCCATTCCTCTGTAATTTCATGATTC  441

seq1  TTCATAAACATCAAGAAATTACTTTCTTCTTTATGTTTTCATATTCATTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAACATCAAGAAATTACTTTCTTCTTTATGTTTTCATATTCATTA  491

seq1  AGTACAATATCTGACTCATTTATCTTTTTATCCAAATAATGAGATCAGTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAATATCTGACTCATTTATCTTTTTATCCAAATAATGAGATCAGTG  541

seq1  GTCTTGTAACATCAGTACATATTTTAATCTATATAAGTATTTGATTACTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTAACATCAGTACATATTTTAATCTATATAAGTATTTGATTACTT  591

seq1  TTCTGTTTTTATTCAGTTTAAGAGGATAGAAAACAGACACATTATATAAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTTTATTCAGTTTAAGAGGATAGAAAACAGACACATTATATAAG  641

seq1  CCCATCATTTTGCAGGTTAGTAAACTGAACCCCAACTGACTGTTGTGGAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCATTTTGCAGGTTAGTAAACTGAACCCCAACTGACTGTTGTGGAG  691

seq1  TATTCCACGTAGCTCTTAACAGATCTGGTAACTAATCAAGTTTTTCTCAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCACGTAGCTCTTAACAGATCTGGTAACTAATCAAGTTTTTCTCAA  741

seq1  AATGGTCACAGCAAAGTGGATGAAATCGGGCATCTGTACAACAGTGTGCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTCACAGCAAAGTGGATGAAATCGGGCATCTGTACAACAGTGTGCT  791

seq1  TGGAAAGAGATCAGGGAGTCCTCTAGCCTTTCATCACTGAAGTAAATCTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGAGATCAGGGAGTCCTCTAGCCTTTCATCACTGAAGTAAATCTT  841

seq1  CCAGGGTGGTGTGTAATTCATTTATATAGAAACTTAGGTCTCTGGGTAGA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTGGTGTGTAATTCATTTATATAGAAACTTAGGTCTCTGGGTAGA  891

seq1  GTAGAGAAAATGGCAAGACCTGAGAATTAACTGACAGTCTGGGAGTTACT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGAAAATGGCAAGACCTGAGAATTAACTGACAGTCTGGGAGTTACT  941

seq1  GGAAGCTAATAATTATGCTAGCTTCTCCTCCTGATTCCAAAGTGCAAACA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTAATAATTATGCTAGCTTCTCCTCCTGATTCCAAAGTGCAAACA  991

seq1  TGCTTTAAACAGATTGCCAGTTCCCCCAGGGAGGAGAGGAGGAAATGGCT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAAACAGATTGCCAGTTCCCCCAGGGAGGAGAGGAGGAAATGGCT  1041

seq1  GGATTAAAGTCAGAAAGCAGAGAGCCAAAAAAATCTAGTATTCATTACCA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAAGTCAGAAAGCAGAGAGCCAAAAAAATCTAGTATTCATTACCA  1091

seq1  TCCCCGTCAATGAATATTTATCGAGCTCCCACAGAGAACCTAGTATCAAG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGTCAATGAATATTTATCGAGCTCCCACAGAGAACCTAGTATCAAG  1141

seq1  GCTCAGGAATTC  1155
      ||||||||||||
seq2  GCTCAGGAATTC  1153