BAC Information

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BAC

Clone NameB6Ng01-118C12
Chromosome6 (Build37)
Map Location 26,232,004 - 26,233,168
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr37, Pot1a, EG626912, LOC100041210
Downstream geneLOC100041247, Grm8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118C12.bB6Ng01-118C12.g
ACCDH922710DH922711
length1,2201,134
definitionDH922710|Mus musculus domesticus DNA, BAC clone: B6Ng01-118C12, 5' end.DH922711|Mus musculus domesticus DNA, BAC clone: B6Ng01-118C12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattgttaacaactgggaacaacaaaggctccacctaagattcac
ttaatcttagaagccagggtcaagggcttcctgcccttgccatagttcct
attttagtctattgtatagtccaccttccccttaggtcattgtaaatacg
tgtgtatgggtgtaactcagctatctatagttctaagtatctactctggt
ttctccataggtctgaaacttccttctttctaggtgatggtaaattcctg
tatatggaagtgacttagcttttattcaaagtgatagtgtagtaccagag
gcaattctgaatatcaatgaatagcaacattcttactgaatttccaagcc
catggtcttgctcaaggactttctaggactgttggaacactggcaaaggc
tttagctatgtcagaattcaatcttaaaaggcacttataataggataata
ctaaaagagagcacgtggatccatacacgagactaacacgggaatggaaa
attaatgtatgggttagagagaacaccagactccaggagtgagttcccat
gaaactcttctgcatcgtgagtagcttccaagcctctcggcttgtcaagc
tgactcgaccagagtgcgtggcaagccgctggttgagcaggtttcctgtg
tccctgttcctgctggcacaggcctctcccagttgttttggaacagtggt
gtgtttcactcacgagtgatcccaagatcctggtcatgctaaggcgtcat
tggtgtggaaagtcctctggggatcgtgggaccatccaccaagttcgggc
ccaaggtggcctggagctggcgccgacaagatcagaatgctccctcattt
cttatatcagctcaataagttgaaaatccctaacaatatgaactgaccag
tacccccagagttcgtgtctctagctgcatatgtagcagagatggcctag
tcggcatcattgggagacaggcccttggtcttgcaagattatatgcccag
tataggggatgccagacagaaaacagagtgggtggtggagcaggcagggg
agacagtaatagcactttcagatagcattgaaatgtatgaagaaaaattc
tatatattattatattattatataaagggattctagttatttctggtagg
tcaatgcgttatctaacgtccgtcctcatcagttgcaaccgattcctagt
tgtattcgaagaagttgttc
gaattcttttgggaaacgttgttatcgcagatggatcaatagatcactta
gtttgtacttgtatgttacaggtctgcttaaatagacagtttatagtata
attgcttataactttttaggtaccatcactgttatttttttatttttata
actttctatatatatatatatatatacatatatatatatatatatatata
tgttttttcaactcatttattatcaatttaaatgttatttaatattgagg
agacagtattacaaacagaaggaccgtgtacatgaatataaagcttaaag
atttttgacaaaattagaaaacattcttttactgaaatgaaaagctatca
gatcttattcctgcccataccaaaggaagaaaattcaacatttctctatt
tttttcctctgagaaaaggggctagatttattttatttatttgaggtcat
gaaacaagcactaagtataatagatcctatgttctatttcccaataaaat
caatgactggactccagggtcatgtgcacagatttcatgttatgctggat
ttatgtttgtaactttggaattacataagaaagaaaaagtcatcaaacat
gaaaatgttcactgaaaagtgacaactatgaaattctactcataaaattc
ctgttaactgtatcaaacagattgactcttaattgttttccaatacaaaa
caaattgatgtgatgtattgttgcaatttttgagagaaaagaaatggtca
agttaaaaggcatgatagactataagagtttcaattaaaattatgtttaa
tatctgacccattaaatcaattagccatcaacagaagagaaaaataacct
ctaagatgatgaaataaacgagctaagagaaatgcttcatttgattctga
gagattcataggacagtggtgaaatcttggcattttcgcaaaataaaatc
ttgtaatttaattcacataaaatactgtgatgaaaatactatgtcatagc
atcatataatttgtagggatattactgacatttgctttagttgggaggat
ctcaacactgatttcacagcatctgatagtggtgtagctctgtgcagtcg
catggtatgtgaactcacctgtcaatgtgctgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_26232004_26233168
seq2: B6Ng01-118C12.g_69_1202

seq1  GAATTCTTTTGGGAAACGTTGTTATCGCAGATGGATCAATAGATCACTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGGGAAACGTTGTTATCGCAGATGGATCAATAGATCACTTA  50

seq1  GTTTGTACTTGTATGTTACAGGTCTGCTTAAATAGACAGTTTATAGTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTACTTGTATGTTACAGGTCTGCTTAAATAGACAGTTTATAGTATA  100

seq1  ATTGCTTATAACTTTTTAGGTACCATCACTGTTATTTTTTTATTTTTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTATAACTTTTTAGGTACCATCACTGTTATTTTTTTATTTTTATA  150

seq1  ACTTTCTATATATATATATATATATACATATATATATATATATATATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTATATATATATATATATATACATATATATATATATATATATATA  200

seq1  TGTTTTTTCAACTCATTTATTATCAATTTAAATGTTATTTAATATTGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTCAACTCATTTATTATCAATTTAAATGTTATTTAATATTGAGG  250

seq1  AGACAGTATTACAAACAGAAGGACCGTGTACATGAATATAAAGCTTAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTATTACAAACAGAAGGACCGTGTACATGAATATAAAGCTTAAAG  300

seq1  ATTTTTGACAAAATTAGAAAACATTCTTTTACTGAAATGAAAAGCTATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGACAAAATTAGAAAACATTCTTTTACTGAAATGAAAAGCTATCA  350

seq1  GATCTTATTCCTGCCCATACCAAAGGAAGAAAATTCAACATTTCTCTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTATTCCTGCCCATACCAAAGGAAGAAAATTCAACATTTCTCTATT  400

seq1  TTTTTCCTCTGAGAAAAGGGGCTAGATTTATTTTATTTATTTGAGGTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTCTGAGAAAAGGGGCTAGATTTATTTTATTTATTTGAGGTCAT  450

seq1  GAAACAAGCACTAAGTATAATAGATCCTATGTTCTATTTCCCAATAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAGCACTAAGTATAATAGATCCTATGTTCTATTTCCCAATAAAAT  500

seq1  CAATGACTGGACTCCAGGGTCATGTGCACAGATTTCATGTTATGCTGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACTGGACTCCAGGGTCATGTGCACAGATTTCATGTTATGCTGGAT  550

seq1  TTATGTTTGTAACTTTGGAATTACATAAGAAAGAAAAAGTCATCAAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTTGTAACTTTGGAATTACATAAGAAAGAAAAAGTCATCAAACAT  600

seq1  GAAAATGTTCACTGAAAAGTGACAACTATGAAATTCTACTCATAAAATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTTCACTGAAAAGTGACAACTATGAAATTCTACTCATAAAATTC  650

seq1  CTGTTAACTGTATCAAACAGATTGACTCTTAATTGTTTTCCAATACAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAACTGTATCAAACAGATTGACTCTTAATTGTTTTCCAATACAAAA  700

seq1  CAAATTGATGTGATGTATTGTTGCAATTTTTGAGAGAAAAGAAATGGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGATGTGATGTATTGTTGCAATTTTTGAGAGAAAAGAAATGGTCA  750

seq1  AGTTAAAAGGCATGATAGACTATAAGAGTTTCAATTAAAATTATGTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAAGGCATGATAGACTATAAGAGTTTCAATTAAAATTATGTTTAA  800

seq1  TATCTGACCCATTAAATCAATTAGCCATCAACAGAAGAGAAAAATAACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGACCCATTAAATCAATTAGCCATCAACAGAAGAGAAAAATAACCT  850

seq1  CTAAAGATGATGAAATAAACGAGCTAAAGAGAAATGCTTCATTTGATTCT  900
      || |||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CT-AAGATGATGAAATAAACGAGCT-AAGAGAAATGCTTCATTTGATTCT  898

seq1  GAGAGATTCATAGGACAGTTGGTGAAATCCTTGGCATTTTCGCAAAATAA  950
      |||||||||||||||||| ||||||||| ||||||||||||||||||| |
seq2  GAGAGATTCATAGGACAG-TGGTGAAAT-CTTGGCATTTTCGCAAAAT-A  945

seq1  AAATCTTTGTAATTTTAATTCAACATAAAATACTGTGATGAAAAATACTA  1000
      ||||| |||||| |||||||| |||||||||||||||||| |||||||||
seq2  AAATC-TTGTAA-TTTAATTC-ACATAAAATACTGTGATG-AAAATACTA  991

seq1  TGTCATAGCATCATATAAATTTGTTAGGGATATTACTTGACAATTTTGCT  1050
      |||||||||||||||| |||||| |||||||||||| |||||  ||||| 
seq2  TGTCATAGCATCATAT-AATTTG-TAGGGATATTAC-TGACA--TTTGC-  1035

seq1  TTTAGTTTTGAGAGGAATCTCCACACTGATTTCCACAGCATCTGATAGTG  1100
      |||||  ||| |||| ||||| |||||||||| |||||||||||||||||
seq2  TTTAG--TTGGGAGG-ATCTCAACACTGATTT-CACAGCATCTGATAGTG  1081

seq1  TGTGTAGCTTCTTGTTGCAGTCGGCAGTGGTTAATGTGAGACTCACACCT  1150
       ||||||| |||   ||||||| ||| ||||  |||||| |||||   | 
seq2  -GTGTAGC-TCT--GTGCAGTC-GCA-TGGT--ATGTGA-ACTCA---CC  1119

seq1  TGTCAATGTGCTGCA  1165
      |||||||||||||||
seq2  TGTCAATGTGCTGCA  1134