BAC Information

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BAC

Clone NameB6Ng01-118D09
Chromosome6 (Build37)
Map Location 77,537,853 - 77,696,667
singlet/doubletdoublet
Overlap geneCtnna2
Upstream geneLOC100042956, Lrrtm1
Downstream geneLOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118D09.bB6Ng01-118D09.g
ACCDH922750DH922751
length1,149659
definitionDH922750|Mus musculus domesticus DNA, BAC clone: B6Ng01-118D09, 5' end.DH922751|Mus musculus domesticus DNA, BAC clone: B6Ng01-118D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,537,853 - 77,539,017)(77,696,011 - 77,696,667)
sequence
gaattctctccctctaaatattctgcaactctacaacatttatttttggt
gtgggtgttttttaatcctttgatggtagtcattctagtcagagcaatat
ctggtttcagtgtgcttttgatttgcatttctctgttgacaattgatact
gattttttttaagatacaccactgtccacttctacattttgcttctatat
agactttggtttctactttaatgtcttggttacctagtaggcatcttcca
aatgtgtcaagtattaaccccataattttgtccctgtttcttggaggcct
tgttaaatatttttatatcatattttgaaatcagatactcataacattta
gctacaaaatagttagtcattcagttgtataatattcattgtcttcttgt
atccttgaataaccccttaatcactcaataatttttaatacctttttcca
gtaaaattggattaggttaacaaaagattctcagtcctggcttcagtgat
taatttctattattgtaagaatttataaagtaaaattgttaactttgtga
ttgtttcccttttgtgttaaagaaagcaaacagattgatttacccagcaa
gtaagcattagttctgctgaattgcgttggtataattcaattgttcatta
cagggtgagaaaaggctcaattgtcctgtcactatggaggaagaaaatac
cacgcatgaacaaaacagtcaaaatgctttatggagatgtttcatcataa
cctctctgctctgccaagtgctatatttctattattctaagaaactgaaa
atcacaatacactctggaaatggtaaacacaagtcaggcataagttttag
cagtattgtaatcagactattgttcttggcttatcaccaggcaaagagtt
cacagccatgggagagaagcaggcttcctagagacgcagcatgggaactc
agtcaaatccattccactttctgtggtagattttatccagccaatatata
aaagtaatagcaggggtcagactttgcagttacctgattttccagacagt
gaactagataatttgcaagagcttaacttcttttgttaccagcacctttc
ggatcatgcatcaataaggatttatgctcacatgcattctatcaatgat
gaattccatacatgaatataatgtgttttgttcacctttaattaatgtag
atctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcatgtgtaaaattgc
acatgagtttgcagacacacatgcatgtatatggtgtatatgtataggta
tgtgtgtatagaggccagaaggcaaccttgcttgttgtgttttagggact
ctccaccattttaggcaagatttcttatttgtgtatcctgggtaggcagg
aagccatcagctggccttggcctctccacccctggggttatatgtttgta
cctccagtcccagctcttggtttttcagcagggataatggaaatcaagct
cagttccttgacttgtttgcatggcaaacacttttctagccctgggtaga
tcttatttccttttaaagtgatgcaatcaggctggtggtacaatggtagg
ttagtggtctagtgaatgcttctcatatataagactctgggctttattct
gcagaaccataaacaacaacaaaaataaataagtcaaagtcacaaaaaca
aaacaaatttccacatttccaagctgctgccaaagatggaaatcagtttt
ccagaagtatttgcctcagaagttttcaaagaaacccaaatgtgcatgca
acactggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_77537853_77539017
seq2: B6Ng01-118D09.b_48_1196

seq1  GAATTCTCTCCCTCTAAATATTCTGCAACTCTACAACATTTATTTTTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCCTCTAAATATTCTGCAACTCTACAACATTTATTTTTGGT  50

seq1  GTGGGTGTTTTTTAATCCTTTGATGGTAGTCATTCTAGTCAGAGCAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGTTTTTTAATCCTTTGATGGTAGTCATTCTAGTCAGAGCAATAT  100

seq1  CTGGTTTCAGTGTGCTTTTGATTTGCATTTCTCTGTTGACAATTGATACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTCAGTGTGCTTTTGATTTGCATTTCTCTGTTGACAATTGATACT  150

seq1  GATTTTTTTTAAGATACACCACTGTCCACTTCTACATTTTGCTTCTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTTTAAGATACACCACTGTCCACTTCTACATTTTGCTTCTATAT  200

seq1  AGACTTTGGTTTCTACTTTAATGTCTTGGTTACCTAGTAGGCATCTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTGGTTTCTACTTTAATGTCTTGGTTACCTAGTAGGCATCTTCCA  250

seq1  AATGTGTCAAGTATTAACCCCATAATTTTGTCCCTGTTTCTTGGAGGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTCAAGTATTAACCCCATAATTTTGTCCCTGTTTCTTGGAGGCCT  300

seq1  TGTTAAATATTTTTATATCATATTTTGAAATCAGATACTCATAACATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAATATTTTTATATCATATTTTGAAATCAGATACTCATAACATTTA  350

seq1  GCTACAAAATAGTTAGTCATTCAGTTGTATAATATTCATTGTCTTCTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAAAATAGTTAGTCATTCAGTTGTATAATATTCATTGTCTTCTTGT  400

seq1  ATCCTTGAATAACCCCTTAATCACTCAATAATTTTTAATACCTTTTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGAATAACCCCTTAATCACTCAATAATTTTTAATACCTTTTTCCA  450

seq1  GTAAAATTGGATTAGGTTAACAAAAGATTCTCAGTCCTGGCTTCAGTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATTGGATTAGGTTAACAAAAGATTCTCAGTCCTGGCTTCAGTGAT  500

seq1  TAATTTCTATTATTGTAAGAATTTATAAAGTAAAATTGTTAACTTTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTATTATTGTAAGAATTTATAAAGTAAAATTGTTAACTTTGTGA  550

seq1  TTGTTTCCCTTTTGTGTTAAAGAAAGCAAACAGATTGATTTACCCAGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCCCTTTTGTGTTAAAGAAAGCAAACAGATTGATTTACCCAGCAA  600

seq1  GTAAGCATTAGTTCTGCTGAATTGCGTTGGTATAATTCAATTGTTCATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCATTAGTTCTGCTGAATTGCGTTGGTATAATTCAATTGTTCATTA  650

seq1  CAGGGTGAGAAAAGGCTCAATTGTCCTGTCACTATGGAGGAAGAAAATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGAGAAAAGGCTCAATTGTCCTGTCACTATGGAGGAAGAAAATAC  700

seq1  CACGCATGAACAAAACAGTCAAAATGCTTTATGGAGATGTTTCATCATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCATGAACAAAACAGTCAAAATGCTTTATGGAGATGTTTCATCATAA  750

seq1  CCTCTCTGCTCTGCCAAGTGCTATATTTCTATTATTCTAAGAAACTGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTGCTCTGCCAAGTGCTATATTTCTATTATTCTAAGAAACTGAAA  800

seq1  ATCACAATACACTCTGGAAATGGTAAACACAAGTCAGGGCATAAGTTTTA  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATCACAATACACTCTGGAAATGGTAAACACAAGTCA-GGCATAAGTTTTA  849

seq1  GCAGTATTGTAATCAGACTATTGTTCTTGGCTTATCACCAGGCAAAGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATTGTAATCAGACTATTGTTCTTGGCTTATCACCAGGCAAAGAGT  899

seq1  TCACAGCCATGGGAGAGAAGCAGGGCTTCCTAGAGACGCAGCATGGGAAC  950
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCACAGCCATGGGAGAGAAGCA-GGCTTCCTAGAGACGCAGCATGGGAAC  948

seq1  TCAGTCAAATCCATTCCACTTTCTGTGGTAGATTTTATCCAGCCAATATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCAAATCCATTCCACTTTCTGTGGTAGATTTTATCCAGCCAATATA  998

seq1  TAAAAGTAATAGCCAGGGGTCAGACTTTGCAGTTACCTGGATTTTCCAGA  1050
      |||||||||||| ||||||||||||||||||||||||| |||||||||| 
seq2  TAAAAGTAATAG-CAGGGGTCAGACTTTGCAGTTACCT-GATTTTCCAG-  1045

seq1  ACAGGTGAACTAGATAATTTGCCAAGAGCCTAACTTCTTTGTTTAACCAG  1100
      ||| ||||||||||||||||| ||||||| |||||||||| | | |||||
seq2  ACA-GTGAACTAGATAATTTG-CAAGAGCTTAACTTCTTT-TGTTACCAG  1092

seq1  CACC-TTCAGATCCATGGCATCAAATTAAAAGGATTTATGCTTCACAATG  1149
      |||| ||| ||| ||| ||||||    | |||||||||||| |||| |||
seq2  CACCTTTCGGAT-CAT-GCATCA----ATAAGGATTTATGC-TCAC-ATG  1134

seq1  CATTTCTATCAATGAT  1165
      || |||||||||||||
seq2  CA-TTCTATCAATGAT  1149

seq1: chr6_77696011_77696667
seq2: B6Ng01-118D09.g_69_727 (reverse)

seq1  GTCCAGTGTTGCATGCACATTTGGGTTTCTTTGAAAACTTCTGAGGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTGTTGCATGCACATTTGGGTTTCTTTGAAAACTTCTGAGGCAAA  50

seq1  TACTTCTGG-AAACTGATTTCCATCTTTGGCAGCAGCTTGG-AATGTGGA  98
      ||||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  TACTTCTGGAAAACTGATTTCCATCTTTGGCAGCAGCTTGGAAATGTGGA  100

seq1  AATTTGTTTTGTTTTTGTGACTTTGACTTATTTATTTTTGTTGTTGTTTA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTTTTGTTTTTGTGACTTTGACTTATTTATTTTTGTTGTTGTTTA  150

seq1  TGGTTCTGCAGAATAAAGCCCAGAGTCTTATGTATGAGAAGCATTCACTA  198
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGGTTCTGCAGAATAAAGCCCAGAGTCTTATATATGAGAAGCATTCACTA  200

seq1  GACCACTAACCTACCATTGTACCACCAGCCTGATTGCATCACTTTAAAAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTAACCTACCATTGTACCACCAGCCTGATTGCATCACTTTAAAAG  250

seq1  GAAATAAGATCTACCCAGGGCTAGAAAAGTGTTTGCCATGCAAACAAGTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAGATCTACCCAGGGCTAGAAAAGTGTTTGCCATGCAAACAAGTC  300

seq1  AAGGAACTGAGCTTGATTTCCATTATCCCTGCTGAAAAACCAAGAGCTGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACTGAGCTTGATTTCCATTATCCCTGCTGAAAAACCAAGAGCTGG  350

seq1  GACTGGAGGTACAAACATATAACCCCAGGGGTGGAGAGGCCAAGGCCAGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAGGTACAAACATATAACCCCAGGGGTGGAGAGGCCAAGGCCAGC  400

seq1  TGATGGCTTCCTGCCTACCCAGGATACACAAATAAGAAATCTTGCCTAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCTTCCTGCCTACCCAGGATACACAAATAAGAAATCTTGCCTAAA  450

seq1  ATGGTGGAGAGTCCCTAAAACACAACAAGCAAGGTTGCCTTCTGGCCTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGAGAGTCCCTAAAACACAACAAGCAAGGTTGCCTTCTGGCCTCT  500

seq1  ATACACACATACCTATACATATACACCATATACATGCATGTGTGTCTGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACATACCTATACATATACACCATATACATGCATGTGTGTCTGCA  550

seq1  AACTCATGTGCAATTTTACACATGAACACACACACACACACACACACACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATGTGCAATTTTACACATGAACACACACACACACACACACACACA  600

seq1  CACACAGATCTACATTAATTAAAGGTGAACAAAACACATTATATTCATGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGATCTACATTAATTAAAGGTGAACAAAACACATTATATTCATGT  650

seq1  ATGGAATTC  657
      |||||||||
seq2  ATGGAATTC  659