BAC Information

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BAC

Clone NameB6Ng01-118D23
Chromosome6 (Build37)
Map Location 18,557,931 - 18,676,659
singlet/doubletdoublet
Overlap genenone
Upstream geneCapza2, St7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2
Downstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118D23.bB6Ng01-118D23.g
ACCDH922778DH922779
length1,1911,085
definitionDH922778|Mus musculus domesticus DNA, BAC clone: B6Ng01-118D23, 5' end.DH922779|Mus musculus domesticus DNA, BAC clone: B6Ng01-118D23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,675,459 - 18,676,659)(18,557,931 - 18,558,712)
sequence
gaattcttctatcttggtgtccctattatgatcctggcaactgataacaa
ttccaaccaactatttgtatgcaatgatattaagcatgggtttgcacaac
ttgcctaaagatttaaagataatttaaatctcaatatagtatgtactatt
taaaggtgtatttctccctcagacataattctcatttatatattaatcca
taaaataattttatcattgtataatagagaaacccaagattcaatcacta
aaagtgacatagagtatggcttatcaacatacttttcaaccttccttctc
cattcatatcttctgtcctgtgttcaagtcctattctcttctcatttcta
atatgcttcagctccacatagtccctaggctatctcccaaatctcttcac
ttttatcccttcactcccacaactccccaaataactcttgctctgtatct
ttgtttggtgtgtgtgtgcacatgcacatgcgttgcatacctgtgtgcta
atatagattcacacgtgctataacacaagtatgaaagtcagagttcttgt
gttggtacttactaccaccatgttagacaggcgctcttgataacccacac
cacttcatagtgtatagcagtctggctggccctccagctttcaggatatc
tcctgtctctgcctcccatttggctttatgagtactatggttataagacc
atgctactgtcccatcctgcctagctttatgtggcttctgtgcttttgaa
tttgcctccctaagcttatatacccactgaggcccctagaccctaaaatt
cctttttaatttaaagtatacttctgtgtgctttaccactatttaagaca
cttaaaagattctgctgtgtgtgtgatggtttacaaatgcctcctcattt
catcctaacattgccttgttggctttaatcccactgtatcctccataatc
ctcaggtaccagtcacaacaaactacatagaaattgccaagaaactcatg
ggtttggaaatgctggaattctgcagtatacagttttctctcagccagga
aacctgtgccttctttgcctcacatgatgtttgtttgtttttctccccag
cttgtagcactctttgtcaagaacatccttacttcaatcattacccaaag
ttcaagttaatgattttcatctatgtgctccccagaacaaa
gaattcactgtattttgtttatttctatttcattaatttcagcttcaatt
ttcaatctcttcctgtatattttggaagagtattgtttgtttttttaagg
cctttgggaatatcattaatttattaatatttacctttctctttatgtta
tgtaaacctctagtaccatgaacattcctcttagaactgtcttcattttg
tcccacagtccttagcatactttattttcactttgttcaattctaaaagt
tttcaaatatcattcttggttcaattatcattctacattatatttactag
tctccgtgagtttctacactttttttagtttctattgctgttgctataca
gatttattctattgtggccagatagaatataaaaatattatttcaattct
catgtatatattaagacttttttgtgttcttattagcttgtgtttgataa
ggcttatatgtggctggctttggagaaagtttgatgggatactgagaaga
ctttatgttctctaatgtttaggtgaaacattctacatgtatttgttagg
tacacttaaatttataatgtcatttagctccaaatttcctgtttagtttt
tgtccagataatctgactatttgagattgtggtattgaactcacccacta
tcactgtaccagggagagtatgtggttttaaatatagatgtgtcctttca
tgaaattggatgtacctgtgtttggtgcatatatgtctagaattgtgata
tagttcccattactttgttatttttatagtttttcttagacttcttttga
ttaactgtttggaattacttactccctgtgacaacatgggtatgttcatc
tttgtcttcagactggagtattatagtatatatagtatatatagtgttcc
ttgtatttctggcttggtggccataaattattttggtctgttttattatg
gaaagtttttatttctttaaatttaatacatctttccaggccttttgttt
aaatatttctaatgaattatcaggtgctaatctgtgggcctatctttaaa
aggactaaactttctcttgagctcccatattcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18675459_18676659
seq2: B6Ng01-118D23.b_47_1237 (reverse)

seq1  TTTGTTTCCTGTGGGGAGCACATAGATGAAAAACCACTAC-TGAACTATG  49
      |||||    | ||||||||||||||||||||| |    || |||||| ||
seq2  TTTGT----TCTGGGGAGCACATAGATGAAAATCATTAACTTGAACTTTG  46

seq1  GGTAAATGA-TGAAGTTAAGGATG-TCTTGACAAAGGAGGTGCTAACAAA  97
      ||| ||||| ||||| |||||||| |||||||||||   ||||||   ||
seq2  GGT-AATGATTGAAG-TAAGGATGTTCTTGACAAAG--AGTGCTA--CAA  90

seq1  GCTGGGGAGAAAAACAAAACAAAACATCATGTGGAGGCAAAGAAGGCACA  147
      ||||||||||||||||||   ||||||||||| |||||||||||||||||
seq2  GCTGGGGAGAAAAACAAA--CAAACATCATGT-GAGGCAAAGAAGGCACA  137

seq1  GGTTTCCTGGCTGAGAGAAAACTGTATACTGCAGAATTCCAGCATTTCCA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCTGGCTGAGAGAAAACTGTATACTGCAGAATTCCAGCATTTCCA  187

seq1  AACCCATGAGTTTCTTGGCAATTTCTATGTAGTTTGTTGTGACTGGTACC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATGAGTTTCTTGGCAATTTCTATGTAGTTTGTTGTGACTGGTACC  237

seq1  TGAGGATTATGGAGGATACAGTGGGATTAAAGCCAACAAGGCAATGTTAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATTATGGAGGATACAGTGGGATTAAAGCCAACAAGGCAATGTTAG  287

seq1  GATGAAATGAGGAGGCATTTGTAAACCATCACACACACAGCAGAATCTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAATGAGGAGGCATTTGTAAACCATCACACACACAGCAGAATCTTT  337

seq1  TAAGTGTCTTAAATAGTGGTAAAGCACACAGAAGTATACTTTAAATTAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTCTTAAATAGTGGTAAAGCACACAGAAGTATACTTTAAATTAAA  387

seq1  AAGGAATTTTAGGGTCTAGGGGCCTCAGTGGGTATATAAGCTTAGGGAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATTTTAGGGTCTAGGGGCCTCAGTGGGTATATAAGCTTAGGGAGG  437

seq1  CAAATTCAAAAGCACAGAAGCCACATAAAGCTAGGCAGGATGGGACAGTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCAAAAGCACAGAAGCCACATAAAGCTAGGCAGGATGGGACAGTA  487

seq1  GCATGGTCTTATAACCATAGTACTCATAAAGCCAAATGGGAGGCAGAGAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTCTTATAACCATAGTACTCATAAAGCCAAATGGGAGGCAGAGAC  537

seq1  AGGAGATATCCTGAAAGCTGGAGGGCCAGCCAGACTGCTATACACTATGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATATCCTGAAAGCTGGAGGGCCAGCCAGACTGCTATACACTATGA  587

seq1  AGTGGTGTGGGTTATCAAGAGCGCCTGTCTAACATGGTGGTAGTAAGTAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGTGGGTTATCAAGAGCGCCTGTCTAACATGGTGGTAGTAAGTAC  637

seq1  CAACACAAGAACTCTGACTTTCATACTTGTGTTATAGCACGTGTGAATCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACAAGAACTCTGACTTTCATACTTGTGTTATAGCACGTGTGAATCT  687

seq1  ATATTAGCACACAGGTATGCAACGCATGTGCATGTGCACACACACACCAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGCACACAGGTATGCAACGCATGTGCATGTGCACACACACACCAA  737

seq1  ACAAAGATACAGAGCAAGAGTTATTTGGGGAGTTGTGGGAGTGAAGGGAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGATACAGAGCAAGAGTTATTTGGGGAGTTGTGGGAGTGAAGGGAT  787

seq1  AAAAGTGAAGAGATTTGGGAGATAGCCTAGGGACTATGTGGAGCTGAAGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGAAGAGATTTGGGAGATAGCCTAGGGACTATGTGGAGCTGAAGC  837

seq1  ATATTAGAAATGAGAAGAGAATAGGACTTGAACACAGGACAGAAGATATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGAAATGAGAAGAGAATAGGACTTGAACACAGGACAGAAGATATG  887

seq1  AATGGAGAAGGAAGGTTGAAAAGTATGTTGATAAGCCATACTCTATGTCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGAAGGAAGGTTGAAAAGTATGTTGATAAGCCATACTCTATGTCA  937

seq1  CTTTTAGTGATTGAATCTTGGGTTTCTCTATTATACAATGATAAAATTAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGTGATTGAATCTTGGGTTTCTCTATTATACAATGATAAAATTAT  987

seq1  TTTATGGATTAATATATAAATGAGAATTATGTCTGAGGGAGAAATACACC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGATTAATATATAAATGAGAATTATGTCTGAGGGAGAAATACACC  1037

seq1  TTTAAATAGTACATACTATATTGAGATTTAAATTATCTTTAAATCTTTAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATAGTACATACTATATTGAGATTTAAATTATCTTTAAATCTTTAG  1087

seq1  GCAAGTTGTGCAAACCCATGCTTAATATCATTGCATACAAATAGTTGGTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTGTGCAAACCCATGCTTAATATCATTGCATACAAATAGTTGGTT  1137

seq1  GGAATTGTTATCAGTTGCCAGGATCATAATAGGGACACCAAGATAGAAGA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGTTATCAGTTGCCAGGATCATAATAGGGACACCAAGATAGAAGA  1187

seq1  ATTC  1201
      ||||
seq2  ATTC  1191

seq1: chr6_18557931_18558712
seq2: B6Ng01-118D23.g_378_1149

seq1  CTACACTTTTTTTAGTTTCTATTGCTGTTGCTATACAGATTTATTCTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTTTTTTTAGTTTCTATTGCTGTTGCTATACAGATTTATTCTATT  50

seq1  GTGGCCAGATAGAATATAAAAATATTATTTCAATTCTCATGTATATATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCAGATAGAATATAAAAATATTATTTCAATTCTCATGTATATATTA  100

seq1  AGACTTTTTTGTGTTCTTATTAGCTTGTGTTTGATAAGGCTTATATGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTTTTGTGTTCTTATTAGCTTGTGTTTGATAAGGCTTATATGTGG  150

seq1  CTGGCTTTGGAGAAAGTTTGATGGGATACTGAGAAGACTTTATGTTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTTGGAGAAAGTTTGATGGGATACTGAGAAGACTTTATGTTCTCT  200

seq1  AATGTTTAGGTGAAACATTCTACATGTATTTGTTAGGTACACTTAAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTAGGTGAAACATTCTACATGTATTTGTTAGGTACACTTAAATTT  250

seq1  ATAATGTCATTTAGCTCCAAATTTCCTGTTTAGTTTTTGTCCAGATAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTCATTTAGCTCCAAATTTCCTGTTTAGTTTTTGTCCAGATAATC  300

seq1  TGACTATTTGAGATTGTGGTATTGAACTCACCCACTATCACTGTACCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATTTGAGATTGTGGTATTGAACTCACCCACTATCACTGTACCAGG  350

seq1  GAGAGTATGTGGTTTTAAATATAGATGTGTCCTTTCATGAAATTGGATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTATGTGGTTTTAAATATAGATGTGTCCTTTCATGAAATTGGATGT  400

seq1  ACCTGTGTTTGGTGCATATATGTCTAGAATTGTGATATAGTTCCCATTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGTTTGGTGCATATATGTCTAGAATTGTGATATAGTTCCCATTAC  450

seq1  TTTGTTATTTTTATAGTTTTTCTTAGACTTCTTTTGATTAACTGTTTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTATTTTTATAGTTTTTCTTAGACTTCTTTTGATTAACTGTTTGGA  500

seq1  ATTACTTACTCCCTGTGACAACATGGGTATGTTCATCTTTGTCTTCAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTACTCCCTGTGACAACATGGGTATGTTCATCTTTGTCTTCAGAC  550

seq1  TGGAGTATTATAGTATATATAGTATATATAGTGTTCCTTGTATTTCTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTATTATAGTATATATAGTATATATAGTGTTCCTTGTATTTCTGGC  600

seq1  TTGGTGGCCATAAATTATTTTGGTCTGTTTTTATTATGGAAAGTTTTTAT  650
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTGGTGGCCATAAATTATTTTGGTCTG-TTTTATTATGGAAAGTTTTTAT  649

seq1  TTCTTTAAATTTTAATACATCTTTCCAGGCCCTTTTGTTTTAAATATTTC  700
      ||||||||| ||||||||||||||||||| ||||||| ||||||||||||
seq2  TTCTTTAAA-TTTAATACATCTTTCCAGG-CCTTTTG-TTTAAATATTTC  696

seq1  TATTGAATTATCAGGTGCTATTCTTGTGGGCCTATCTTTATAAGGAACTC  750
      || ||||||||||||||||| || |||||||||||||||| |||| ||| 
seq2  TAATGAATTATCAGGTGCTAATC-TGTGGGCCTATCTTTAAAAGG-ACTA  744

seq1  AACTTTTCTTCTTGTAGCTTCCCATATTCTTT  782
      ||||||   ||||| ||| |||||||||||||
seq2  AACTTT--CTCTTG-AGC-TCCCATATTCTTT  772