BAC Information

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BAC

Clone NameB6Ng01-118M17
Chromosome6 (Build37)
Map Location 59,342,636 - 59,419,206
singlet/doubletdoublet
Overlap geneGprin3
Upstream geneLOC666928, V1rc22, LOC626817, EG626828, LOC666954, Abcg2, Herc3, Nap1l5, D430015B01Rik, Tigd2
Downstream geneEG634166, EG627108, EG434019, LOC671300, EG627178, LOC100041706, LOC100041717, A530053G22Rik, LOC667066
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118M17.bB6Ng01-118M17.g
ACCDH923181DH923182
length1,061947
definitionDH923181|Mus musculus domesticus DNA, BAC clone: B6Ng01-118M17, 5' end.DH923182|Mus musculus domesticus DNA, BAC clone: B6Ng01-118M17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,342,636 - 59,343,688)(59,418,326 - 59,419,206)
sequence
gaattccattaagttcccttgttgattgctggttttgtttcctaggtgac
cagagtcctattcataaagtccttatctgagctgatctcctgaagtgcac
tctttagtctttttttcttttcttttctttcttttctttctttttctttt
ttttttttttttttttttttttttgaggagttttagagtttcagtactac
cagggagatgcttttgaagttgagttttgtgcaggttaagaaagagaagg
atcaagttctacatcttgctatccagtttttccagcatatatttttgtta
gagatgctgtctttgttcagtgtataatttttgcatctttgtaaaaatca
agtggccacaggttcatagaattatatttgggccaatgagtctcttccac
catttattgtgtctgttactgtgtcggtaccatactctgttttgactact
atgactctgtagtataacttgaaatcaagtatattggtacatttggtaat
gatttactgttcatggagggcagagcagaagataaaagaacaatcagaaa
ggacatacctattttataagataacatgcttaattggaattattctatgc
agggtattgtgtttatcctggacgccataacagaccaaattaggaggcca
atgccatgtctcgaataccatgactcaaggtgttggtcagaggtgtccca
gagactgctgaaaaaatacaagcaattgccattgctttcggttgctcacc
agaacttataagaccctaagtgtagtgatgtcacagatactggtcacagg
acaaggaaaaaccagtattggtattaaccaggtgcttcccagctctcaca
gtatcacttagaagcattatatggttggtgggtagaaagaaagtcagcag
agcctgaatcaccataataagtggcatggtgtctagttactgtttcattg
ctgggaagagacacatgaccaagctattatttacaatttcaagaattagt
tcatttgcacaataaagggagcaaggcgaacagtagaatatagtgcttga
cagcttagatc
gaattcctggctccatcactacatgacatcatctggacttctctatttaa
tggcataataaatatctttcttttcttatcttactttataatcaaaagat
atctaatatatagcataactgtctttaaaatatataagccctcattatat
ggcaccagtttgcttgtaactcattagctatctagcctgggctgactttg
agttcgtgatcctcctgcctcagcctacctaccaagttctgaaattacag
gaatgtgtccttgtgaccagtgttccatctatacattcccattagatgcc
tatcatatgtttatagaaatattaagtgaacatagattgcagaagaatct
acaatagatagaagagctactttaagagtagctcaaagacgtctatattc
taatcatcaaaacctgtgaatatattaactgaaataatatatttgtaaat
gtgattaaggataaatatcttgagaatcaggagatcaatataattgcatg
aattcttttttaatttctttttttaattaggtatttatttcatttacatt
tccaatgctaccccaaaagtcccctacacgctcccctacccactccccca
cccacccactcccacttcttggccctggcgttcccctgtactgaggcaga
taaagtttgcaggaccaatgggcctctctttccactgatggccgactagg
ccatcttcttatgcataattgcatgaattgaaaacagagcagaaaaacaa
gatagagtcagtgatgagatgagccagggatgtaaatcacctgtaatccc
agcagttagcagctgaggcagacatgttgagaactaacagctagcttgag
gcacactgtgggattggagacatggataaagaaaatggaaatgagagaag
gtaaagagattctgagtctaaatctgaaaggaagtgttgacttaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_59342636_59343688
seq2: B6Ng01-118M17.b_64_1107

seq1  CTTGTTGATTGCTGGTTTTGTTTCCTAGGTGACCAGAGTCCTATTCATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGATTGCTGGTTTTGTTTCCTAGGTGACCAGAGTCCTATTCATAA  50

seq1  AGTCCTTATCTGAGCTGATCTCCTGAAGTGCACTCTTTAGTCTTTTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTATCTGAGCTGATCTCCTGAAGTGCACTCTTTAGTCTTTTTTTC  100

seq1  TTTTCTTTTCTTTCTTTTCTTTCTTTTTCTTTTTTTTTTTTTTTTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTCTTTCTTTTCTTTCTTTTTCTTTTTTTTTTTTTTTTTTTTT  150

seq1  TTTTTTTGAGGAGTTTTAGAGTTTCAGTACTACCAGGGAGATGCTTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGAGGAGTTTTAGAGTTTCAGTACTACCAGGGAGATGCTTTTGA  200

seq1  AGTTGAGTTTTGTGCAGGTTAAGAGAGAGAAGGATCAAGTTCTACATCTT  250
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGTTGAGTTTTGTGCAGGTTAAGAAAGAGAAGGATCAAGTTCTACATCTT  250

seq1  GCTATCCAGTTTTTCCAGCATATATTTTTGTTAGAGATGCTGTCTTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCCAGTTTTTCCAGCATATATTTTTGTTAGAGATGCTGTCTTTGTT  300

seq1  CAGTGTATAATTTTTGCATCTTTGTAAAAATCAAGTGGCCACAGGTTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTATAATTTTTGCATCTTTGTAAAAATCAAGTGGCCACAGGTTCAT  350

seq1  AGAATTATATTTGGGCCAATGAGTCTCTTCCACCATTTATTGTGTCTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTATATTTGGGCCAATGAGTCTCTTCCACCATTTATTGTGTCTGTT  400

seq1  ACTGTGTCGGTACCATACTCTGTTTTGACTACTATGACTCTGTAGTATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTCGGTACCATACTCTGTTTTGACTACTATGACTCTGTAGTATAA  450

seq1  CTTGAAATCAAGTATATTGGTACATTTGGTAATGATTTACTGTTCATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAATCAAGTATATTGGTACATTTGGTAATGATTTACTGTTCATGGA  500

seq1  GGGCAGAGCAGAAGATAAAAGAACAATCAGAAAGGACATACCTATTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGAGCAGAAGATAAAAGAACAATCAGAAAGGACATACCTATTTTAT  550

seq1  AAGATAACATGCTTAATTGGAATTATTCTATGCAGGGTATTGTGTTTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAACATGCTTAATTGGAATTATTCTATGCAGGGTATTGTGTTTATC  600

seq1  CTGGACGCCATAACAGACCAAATTAGGAGGCCAATGCCATGTCTCGAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACGCCATAACAGACCAAATTAGGAGGCCAATGCCATGTCTCGAATA  650

seq1  CCATGACTCAAGGTGTTGGTCAGAGGTGTCCCAGAGACTGCTGAAAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACTCAAGGTGTTGGTCAGAGGTGTCCCAGAGACTGCTGAAAAAAT  700

seq1  ACAAGCAATTGCCATTGCTTTCGGTTGCTCACCAGAACTTATAAGACCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAATTGCCATTGCTTTCGGTTGCTCACCAGAACTTATAAGACCCT  750

seq1  AAGTGTAGTGATGTCACAGATACTGGTCACAGGACAAGGAAAAACCAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAGTGATGTCACAGATACTGGTCACAGGACAAGGAAAAACCAGTA  800

seq1  TTGGTATTAACCAGGGTGCTTCCCAGCTCTCACAGTATCACTTAGAAGGC  850
      ||||||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  TTGGTATTAACCA-GGTGCTTCCCAGCTCTCACAGTATCACTTAGAA-GC  848

seq1  ATTATATGGTTGGTGGGTAGAAAGAAAGTCAGCAAGAGCCTGAATCACCA  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATTATATGGTTGGTGGGTAGAAAGAAAGTCAGC-AGAGCCTGAATCACCA  897

seq1  TAATAAGTGGCATGGTGTCTTAGTTACTGTTTCATTGCTGGGAAGAGACA  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TAATAAGTGGCATGGTGTC-TAGTTACTGTTTCATTGCTGGGAAGAGACA  946

seq1  CATGACCAAGCCTATTTATTTACAATTTCAAAGAATTAGTTCATTTGCAC  1000
      |||||||||| ||| |||||||||||||| ||||||||||||||||||||
seq2  CATGACCAAG-CTA-TTATTTACAATTTC-AAGAATTAGTTCATTTGCAC  993

seq1  CATAAAGGGGAGCATGGCAGACAGGTAG-ATATAGTGCTGGAACAGCTTA  1049
       ||||| ||||||| |||  ||| |||| |||||||||| | ||||||||
seq2  AATAAA-GGGAGCAAGGCGAACA-GTAGAATATAGTGCTTG-ACAGCTTA  1040

seq1  GATC  1053
      ||||
seq2  GATC  1044

seq1: chr6_59418326_59419206
seq2: B6Ng01-118M17.g_66_946 (reverse)

seq1  CTTTATCCATGTCTCCAATCCCACAGTGTGCCTCAAGCTAGCTGTTAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCCATGTCTCCAATCCCACAGTGTGCCTCAAGCTAGCTGTTAGTT  50

seq1  CTCAACATGTCTGCCTCAGCTGCTAACTGCTGGGATTACAGGTGATTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACATGTCTGCCTCAGCTGCTAACTGCTGGGATTACAGGTGATTTAC  100

seq1  ATCCCTGGCTCATCTCATCACTGACTCTATCTTGTTTTTCTGCTCTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGGCTCATCTCATCACTGACTCTATCTTGTTTTTCTGCTCTGTTT  150

seq1  TCAATTCATGCAATTATGCATAAGAAGATGGCCTAGTCGGCCATCAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCATGCAATTATGCATAAGAAGATGGCCTAGTCGGCCATCAGTGG  200

seq1  AAAGAGAGGCCCATTGGTCCTGCAAACTTTATCTGCCTCAGTACAGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGGCCCATTGGTCCTGCAAACTTTATCTGCCTCAGTACAGGGGA  250

seq1  ACGCCAGGGCCAAGAAGTGGGAGTGGGTGGGTGGGGGAGTGGGTAGGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCAGGGCCAAGAAGTGGGAGTGGGTGGGTGGGGGAGTGGGTAGGGGA  300

seq1  GCGTGTAGGGGACTTTTGGGGTAGCATTGGAAATGTAAATGAAATAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTAGGGGACTTTTGGGGTAGCATTGGAAATGTAAATGAAATAAATA  350

seq1  CCTAATTAAAAAAAGAAATTAAAAAAGAATTCATGCAATTATATTGATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTAAAAAAAGAAATTAAAAAAGAATTCATGCAATTATATTGATCT  400

seq1  CCTGATTCTCAAGATATTTATCCTTAATCACATTTACAAATATATTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTCTCAAGATATTTATCCTTAATCACATTTACAAATATATTATTT  450

seq1  CAGTTAATATATTCACAGGTTTTGATGATTAGAATATAGACGTCTTTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAATATATTCACAGGTTTTGATGATTAGAATATAGACGTCTTTGAG  500

seq1  CTACTCTTAAAGTAGCTCTTCTATCTATTGTAGATTCTTCTGCAATCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTTAAAGTAGCTCTTCTATCTATTGTAGATTCTTCTGCAATCTAT  550

seq1  GTTCACTTAATATTTCTATAAACATATGATAGGCATCTAATGGGAATGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTTAATATTTCTATAAACATATGATAGGCATCTAATGGGAATGTA  600

seq1  TAGATGGAACACTGGTCACAAGGACACATTCCTGTAATTTCAGAACTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGAACACTGGTCACAAGGACACATTCCTGTAATTTCAGAACTTGG  650

seq1  TAGGTAGGCTGAGGCAGGAGGATCACGAACTCAAAGTCAGCCCAGGCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAGGCTGAGGCAGGAGGATCACGAACTCAAAGTCAGCCCAGGCTAG  700

seq1  ATAGCTAATGAGTTACAAGCAAACTGGTGCCATATAATGAGGGCTTATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTAATGAGTTACAAGCAAACTGGTGCCATATAATGAGGGCTTATAT  750

seq1  ATTTTAAAGACAGTTATGCTATATATTAGATATCTTTTGATTATAAAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAGACAGTTATGCTATATATTAGATATCTTTTGATTATAAAGTA  800

seq1  AGATAAGAAAAGAAAGATATTTATTATGCCATTAAATAGAGAAGTCCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGAAAAGAAAGATATTTATTATGCCATTAAATAGAGAAGTCCAGA  850

seq1  TGATGTCATGTAGTGATGGAGCCAGGAATTC  881
      |||||||||||||||||||||||||||||||
seq2  TGATGTCATGTAGTGATGGAGCCAGGAATTC  881