BAC Information

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BAC

Clone NameB6Ng01-118N19
Chromosome6 (Build37)
Map Location 32,393,557 - 32,517,741
singlet/doubletdoublet
Overlap genePlxna4
Upstream geneMkln1, Podxl, EG619959, LOC620104, 1700012A03Rik
Downstream geneChchd3, LOC100039118, Gm1401, Exoc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118N19.bB6Ng01-118N19.g
ACCDH923232DH923233
length1,1381,147
definitionDH923232|Mus musculus domesticus DNA, BAC clone: B6Ng01-118N19, 5' end.DH923233|Mus musculus domesticus DNA, BAC clone: B6Ng01-118N19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,516,578 - 32,517,741)(32,393,557 - 32,394,715)
sequence
gaattcagcactatctacagttttgggtacccagtgggaatctttaaatg
tatcatttatggataagagggagattactgtaatttacagataccatgtt
agcatctttggctgtgtccttaagtgtgttgcttatttctgctgctatcc
aatttctctatccctcaaaggttaagtaatacattaagtaccactgtgac
aattaaaggacacacacgggaactagtttgtgtacggtttggcatatatt
aattgtccaattggtagaagcagccacaatgttgtgcaaagctattccct
tctcttcagacctaaagtttgctagttctgcttcttgccaccttttgttt
catagtcgcatctatttttgcgccaggctccagcaatccttgagtttctg
tgaaccattggtaagaggagcacaggtagctgttcttaccacatctattc
ttgctctcttcctctctctgaatacgacctcttaaaaaaggacttcagat
atttatagggattccttcatttatggaagagtcaaaaattccccaagagt
ctagatttagcagccatgtttacacaaccaatctggactccgcttggcca
tttattttgccagtaccagcatgtaagtgtactttatttttatagcactc
acagaggtgatacagataatgccccctctccagccatagggatgcttatt
ggccttttttattctgtttttctacccaagactctaaatgtggttttagg
agagagaacacaggagactcttggcagtgtctaaccactgctaagtactg
catagacacgaggccaagcattgaaggacgcgatctgctaatgtctgcct
acagtgagtcccaagcctgatacggtgcactggagaccagagaggtgtat
gttcagtgcgtgtggcatctaaagacttgtatgtgctcaatggcacccaa
caggatattatgaaacacccatttctactgtgttcagcccaggtcctggt
ttctgcaagataccatagaccacatagcagccccctgagatttcctgcac
gtttcgcagctgtggcagctattcatcagatcaattgccggagcatctga
tttcggaatttcagttctccgggcacctcagcctgaaa
gaattccacgttttcctctttagttggggtaaaaacactgctgtccatgc
tgtccaggccatgttagccaggactttttttcagctccctatgcagagat
acaggaaagagagagagacatctatatcattaggtaaatactcaaacttg
aagttcagattctccaagacacaaatcagtgggggctctttttaattctt
gttctaatgttgtctcacaatggattctcaacaattcctttcttctgtta
tgtaatgcctgctcccttcctaggagttaaccatctgctttctcttttta
gcttcacagcatccttgggacagatgcaaccagatcgagacatatgaggc
ccatctttctgtattcagaaacaccaaggcatgaagtctgtgagggtgct
atcctaaatggcaatctctgctttgttctgaccaccttcagctacttgaa
ttgacatgaccttgactaagtgaaggtataaaagagttgagaaccagtcc
tttgtatggatggaaaactgggatgaggatggcaatcaaggtgctatgaa
gatctttacaacatagtgagaaattcaagcatagtagttcaaaaacctcc
agccagcttctcagttcttgggctcctcttggtaggacatagatctaagc
tctaggttcccagtccactttttgttttctcctatgaagctcataaacag
cattttttgaggccatcttctgcagtctgaacacatcatcccatatattt
gggatgtgttcaggaagtctatgtgtgttccctcaggattctgggccatt
cagaccacctcctcattgaggtcaccacctcctcattgaagtctgtctaa
gatttgcagatgcttgctgctggcccacactcctgctcagtgtagaccca
taaccccagggaaaaaacaaggaaagaaaggaaaataaccaagagggtga
ggggaaagattctgaaatctggacaacaatcaagagcctgttccatgaca
actgctccttattacgttgctcaaactgcagctgctcatcagctctgtgg
aatacaagccctcacccagcttggtgaatgtcctacctggcttgccatct
aagaagggagaactggatctcctgaaaatcctgcaggactcacttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_32516578_32517741
seq2: B6Ng01-118N19.b_49_1186 (reverse)

seq1  TTTCAGAGCTGAGGTGCCCGGGAGAACTGAACATTCTCTGACAACCAGGA  50
      |||||| |||||||||||| ||||||||||| ||  || || || || ||
seq2  TTTCAG-GCTGAGGTGCCC-GGAGAACTGAA-AT--TCCGA-AATCA-GA  43

seq1  TGCCTCGGGGCAATGGATTCTGATTGGATAGCTGGCCACAGGCTGCGAAA  100
      |||  |  |||||| || ||||| || |||||| |||||| |||||||||
seq2  TGCTCC--GGCAATTGA-TCTGA-TGAATAGCT-GCCACA-GCTGCGAAA  87

seq1  ACCGTGCAGGAAAATCTCAGGGGGGCTTGCTATGTGGTCTATGGTTATCT  150
        |||||||| |||||||||||||   ||||||||||||||||| |||||
seq2  --CGTGCAGG-AAATCTCAGGGGG--CTGCTATGTGGTCTATGG-TATCT  131

seq1  TGGCAGGAAACCAGGACCTGGGGCTGAACACAGTAGAAATGGGGTGTTTT  200
      | ||| ||||||||||||| |||||||||||||||||||| ||||| |||
seq2  T-GCA-GAAACCAGGACCT-GGGCTGAACACAGTAGAAAT-GGGTG-TTT  176

seq1  CATAATTATCCCTGTTGGGTGCCATTGAGCACATACAAGTCTTTAGATGC  250
      ||||| ||| ||||||||||||||||||||||||||||||||||||||||
seq2  CATAA-TAT-CCTGTTGGGTGCCATTGAGCACATACAAGTCTTTAGATGC  224

seq1  CACACGCACTGAACATACACCTCTCTGGTCTCCAGTGCACCGTATCAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGCACTGAACATACACCTCTCTGGTCTCCAGTGCACCGTATCAGGC  274

seq1  TTGGGACTCACTGTAGGCAGACATTAGCAGATCGCGTCCTTCAATGCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACTCACTGTAGGCAGACATTAGCAGATCGCGTCCTTCAATGCTTG  324

seq1  GCCTCGTGTCTATGCAGTACTTAGCAGTGGTTAGACACTGCCAAGAGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGTGTCTATGCAGTACTTAGCAGTGGTTAGACACTGCCAAGAGTCT  374

seq1  CCTGTGTTCTCTCTCCTAAAACCACATTTAGAGTCTTGGGTAGAAAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTTCTCTCTCCTAAAACCACATTTAGAGTCTTGGGTAGAAAAACA  424

seq1  GAATAAAAAAGGCCAATAAGCATCCCTATGGCTGGAGAGGGGGCATTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAAAAGGCCAATAAGCATCCCTATGGCTGGAGAGGGGGCATTATC  474

seq1  TGTATCACCTCTGTGAGTGCTATAAAAATAAAGTACACTTACATGCTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCACCTCTGTGAGTGCTATAAAAATAAAGTACACTTACATGCTGGT  524

seq1  ACTGGCAAAATAAATGGCCAAGCGGAGTCCAGATTGGTTGTGTAAACATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCAAAATAAATGGCCAAGCGGAGTCCAGATTGGTTGTGTAAACATG  574

seq1  GCTGCTAAATCTAGACTCTTGGGGAATTTTTGACTCTTCCATAAATGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTAAATCTAGACTCTTGGGGAATTTTTGACTCTTCCATAAATGAAG  624

seq1  GAATCCCTATAAATATCTGAAGTCCTTTTTTAAGAGGTCGTATTCAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCCTATAAATATCTGAAGTCCTTTTTTAAGAGGTCGTATTCAGAGA  674

seq1  GAGGAAGAGAGCAAGAATAGATGTGGTAAGAACAGCTACCTGTGCTCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGAGAGCAAGAATAGATGTGGTAAGAACAGCTACCTGTGCTCCTC  724

seq1  TTACCAATGGTTCACAGAAACTCAAGGATTGCTGGAGCCTGGCGCAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAATGGTTCACAGAAACTCAAGGATTGCTGGAGCCTGGCGCAAAAA  774

seq1  TAGATGCGACTATGAAACAAAAGGTGGCAAGAAGCAGAACTAGCAAACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGCGACTATGAAACAAAAGGTGGCAAGAAGCAGAACTAGCAAACTT  824

seq1  TAGGTCTGAAGAGAAGGGAATAGCTTTGCACAACATTGTGGCTGCTTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTGAAGAGAAGGGAATAGCTTTGCACAACATTGTGGCTGCTTCTA  874

seq1  CCAATTGGACAATTAATATATGCCAAACCGTACACAAACTAGTTCCCGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTGGACAATTAATATATGCCAAACCGTACACAAACTAGTTCCCGTG  924

seq1  TGTGTCCTTTAATTGTCACAGTGGTACTTAATGTATTACTTAACCTTTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTTTAATTGTCACAGTGGTACTTAATGTATTACTTAACCTTTGA  974

seq1  GGGATAGAGAAATTGGATAGCAGCAGAAATAAGCAACACACTTAAGGACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAGAGAAATTGGATAGCAGCAGAAATAAGCAACACACTTAAGGACA  1024

seq1  CAGCCAAAGATGCTAACATGGTATCTGTAAATTACAGTAATCTCCCTCTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAAAGATGCTAACATGGTATCTGTAAATTACAGTAATCTCCCTCTT  1074

seq1  ATCCATAAATGATACATTTAAAGATTCCCACTGGGTACCCAAAACTGTAG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATAAATGATACATTTAAAGATTCCCACTGGGTACCCAAAACTGTAG  1124

seq1  ATAGTGCTGAATTC  1164
      ||||||||||||||
seq2  ATAGTGCTGAATTC  1138

seq1: chr6_32393557_32394715
seq2: B6Ng01-118N19.g_67_1213

seq1  GAATTCCACGTTTTCCTCTTTAGTTGGGGTAAAAACACTGCTGTCCATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGTTTTCCTCTTTAGTTGGGGTAAAAACACTGCTGTCCATGC  50

seq1  TGTCCAGGCCATGTTAGCCAGGACTTTTTTTCAGCTCCCTATGCAGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGGCCATGTTAGCCAGGACTTTTTTTCAGCTCCCTATGCAGAGAT  100

seq1  ACAGGAAAGAGAGAGAGACATCTATATCATTAGGTAAATACTCAAACTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAAGAGAGAGAGACATCTATATCATTAGGTAAATACTCAAACTTG  150

seq1  AAGTTCAGATTCTCCAAGACACAAATCAGTGGGGGCTCTTTTTAATTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAGATTCTCCAAGACACAAATCAGTGGGGGCTCTTTTTAATTCTT  200

seq1  GTTCTAATGTTGTCTCACAATGGATTCTCAACAATTCCTTTCTTCTGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAATGTTGTCTCACAATGGATTCTCAACAATTCCTTTCTTCTGTTA  250

seq1  TGTAATGCCTGCTCCCTTCCTAGGAGTTAACCATCTGCTTTCTCTTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGCCTGCTCCCTTCCTAGGAGTTAACCATCTGCTTTCTCTTTTTA  300

seq1  GCTTCACAGCATCCTTGGGACAGATGCAACCAGATCGAGACATATGAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCACAGCATCCTTGGGACAGATGCAACCAGATCGAGACATATGAGGC  350

seq1  CCATCTTTCTGTATTCAGAAACACCAAGGCATGAAGTCTGTGAGGGTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTTCTGTATTCAGAAACACCAAGGCATGAAGTCTGTGAGGGTGCT  400

seq1  ATCCTAAATGGCAATCTCTGCTTTGTTCTGACCACCTTCAGCTACTTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAAATGGCAATCTCTGCTTTGTTCTGACCACCTTCAGCTACTTGAA  450

seq1  TTGACATGACCTTGACTAAGTGAAGGTATAAAAGAGTTGAGAACCAGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATGACCTTGACTAAGTGAAGGTATAAAAGAGTTGAGAACCAGTCC  500

seq1  TTTGTATGGATGGAAAACTGGGATGAGGATGGCAATCAAGGTGCTATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATGGATGGAAAACTGGGATGAGGATGGCAATCAAGGTGCTATGAA  550

seq1  GATCTTTACAACATAGTGAGAAATTCAAGCATAGTAGTTCAAAAACCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTACAACATAGTGAGAAATTCAAGCATAGTAGTTCAAAAACCTCC  600

seq1  AGCCAGCTTCTCAGTTCTTGGGCTCCTCTTGGTAGGACATAGATCTAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCTTCTCAGTTCTTGGGCTCCTCTTGGTAGGACATAGATCTAAGC  650

seq1  TCTAGGTTCCCAGTCCACTTTTTGTTTTCTCCTATGAAGCTCATAAACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTTCCCAGTCCACTTTTTGTTTTCTCCTATGAAGCTCATAAACAG  700

seq1  CATTTTTTGAGGCCATCTTCTGCAGTCTGAACACATCATCCCATATATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTGAGGCCATCTTCTGCAGTCTGAACACATCATCCCATATATTT  750

seq1  GGGATGTGTTCAGGAAGTCTATGTGTGTTCCCTCAGGATTCTGGGCCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTGTTCAGGAAGTCTATGTGTGTTCCCTCAGGATTCTGGGCCATT  800

seq1  CAGGACCACCTCCTCATTGAGGTCACCACCTCCTCATTGAAGTCTGTCTA  850
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-GACCACCTCCTCATTGAGGTCACCACCTCCTCATTGAAGTCTGTCTA  849

seq1  AGATTTGCAGATGCTTGCTGCTGGCCCACAACTCCTGCTCAGTGTAGACC  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGATTTGCAGATGCTTGCTGCTGGCCCAC-ACTCCTGCTCAGTGTAGACC  898

seq1  CATAACCCCAGGGGAAAAAACAAGG-AAGGAAGGAAAATAACCAAGGAGG  949
      |||||||||| |||||||||||||| ||| ||||||||||||||||   |
seq2  CATAACCCCA-GGGAAAAAACAAGGAAAGAAAGGAAAATAACCAAG--AG  945

seq1  GGTGAGGGGAAAGATTCTGAAATCTGGACAAC-ATCAAGAGCCTGTTTCC  998
      |||||||||||||||||||||||||||||||| |||||||||||| ||||
seq2  GGTGAGGGGAAAGATTCTGAAATCTGGACAACAATCAAGAGCCTG-TTCC  994

seq1  ATGACAACTGCTCCTTATTACGGTTGCTCAAACTGCAGCCTGCTCCAATC  1048
      ||||||||||||||||||||| |||||||||||||||| ||||||  |||
seq2  ATGACAACTGCTCCTTATTAC-GTTGCTCAAACTGCAG-CTGCTC--ATC  1040

seq1  AGCTCTGTGG-ATAC-AGCCTTCACCCAGCCTGGGTGATGGCCCCTACCT  1096
      |||||||||| |||| |||| ||||||||| |||   |||   |||||||
seq2  AGCTCTGTGGAATACAAGCCCTCACCCAGCTTGGTGAATG--TCCTACCT  1088

seq1  GGCCTTGCTCTATCTAAG-AGGGAGAACTGGATCTCCTGAGATACCTGCA  1145
      || ||||  | ||||||| ||||||||||||||||||||| |  ||||||
seq2  GG-CTTG--CCATCTAAGAAGGGAGAACTGGATCTCCTGAAAATCCTGCA  1135

seq1  GGACCACCACTTCC  1159
      ||||   |||||||
seq2  GGAC--TCACTTCC  1147