BAC Information

Click to search

BAC

Clone NameB6Ng01-118P04
Chromosome6 (Build37)
Map Location 83,606,977 - 83,756,531
singlet/doubletdoublet
Overlap geneCd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b
Upstream geneLOC100043412, Hk2, EG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f
Downstream geneLOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, Dysf, LOC665114, 4930504D19Rik, Cyp26b1, Exoc6b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118P04.bB6Ng01-118P04.g
ACCDH923289DH923290
length1,171140
definitionDH923289|Mus musculus domesticus DNA, BAC clone: B6Ng01-118P04, 5' end.DH923290|Mus musculus domesticus DNA, BAC clone: B6Ng01-118P04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,606,977 - 83,608,158)(83,756,392 - 83,756,531)
sequence
gaattccctctgagcacacctgggttcttttggtgagatgactcaggtcc
tttctgggatggccaccagttccagaaaggccacattgattagaaacctc
cacccccccctcccctactctcagacatccctgtgagaaggacttcacag
gaagtcacaagaatcctaagcaaggtagggtttgagctgtagctcagttg
gtaaatcacttgtcttacacacataaggccctggcttccatcccaggcag
tctttaaacaagatatggggtacatgcccgtgactatacaactcaggaga
cagagacaggaaaagatcagaagttcaacgtcatactcagctgaccctgt
ctctctcaaacaacaaacttgagcaagaaaatacagaaggctcaatctca
ccctgactcctgagacacagaagtatggtgctcaggagctgctaaacctt
gctttatatctttccattggctcaggctatcccttccaacaaactctgaa
tagtctacccagtgtttgcatgtagttcgatggtttgttctagggaacca
tcaaagctgaatgtcatggcattggctgtaagacagacagaagaatgggt
tgcttggcaacctactagtcacagatctctgaagtggggacagtcttgta
agagactctcagaactctcagactgtgaggtctctgctatctgggagtta
gcatcagaacgatcaaatgatgggtgcacagctgctgtttgacagaaagg
atgtcaggggaacccagcttggtgtcaggagagcagtcagggaatacaaa
tcagagtccaccttcatctaagccaatggttctcagccttcccagtgctg
tgcgcgaccctttaatgcaggtcctcaggtggtggtgaccccagccataa
aactattgttgctacttcataactgtaattttgctatgtcatggatcaca
tatagatacttttggagatagaggcttgccataggggtcgggatgccaca
gtgagacctcccataagactcatcatcagcattatagccatcagtgaata
tcctccaggtcctcagacctaatttaagaaatcgagaagactggtccaag
tacttctttggatgagacctattaacatcttccaagagaaccaaaccctg
cttgggcctggccattgtgtg
ttagattgctgtgtaaattcttatacagcaatagaaagcattctaaatag
ctgctagtctgcctggtctcagtattcatttattagagactgagttctgt
gattatttgaccctattaactttggggggtggggaggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_83606977_83608158
seq2: B6Ng01-118P04.b_48_1218

seq1  GAATTCCCTCTGAGCACACCTGGGTTCTTTTGGTGAGATGACTCAGGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCTGAGCACACCTGGGTTCTTTTGGTGAGATGACTCAGGTCC  50

seq1  TTTCTGGGATGGCCACCAGTTCCAGAAAGGCCACATTGATTAGAAACCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGGATGGCCACCAGTTCCAGAAAGGCCACATTGATTAGAAACCTC  100

seq1  CACCCCCCCCTCCCCTACTCTCAGACATCCCTGTGAGAAGGACTTCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCCCCTCCCCTACTCTCAGACATCCCTGTGAGAAGGACTTCACAG  150

seq1  GAAGTCACAAGAATCCTAAGCAAGGTAGGGTTTGAGCTGTAGCTCAGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCACAAGAATCCTAAGCAAGGTAGGGTTTGAGCTGTAGCTCAGTTG  200

seq1  GTAAATCACTTGTCTTACACACATAAGGCCCTGGCTTCCATCCCAGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATCACTTGTCTTACACACATAAGGCCCTGGCTTCCATCCCAGGCAG  250

seq1  TCTTTAAACAAGATATGGGGTACATGCCCGTGACTATACAACTCAGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAACAAGATATGGGGTACATGCCCGTGACTATACAACTCAGGAGA  300

seq1  CAGAGACAGGAAAAGATCAGAAGTTCAACGTCATACTCAGCTGACCCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACAGGAAAAGATCAGAAGTTCAACGTCATACTCAGCTGACCCTGT  350

seq1  CTCTCTCAAACAACAAACTTGAGCAAGAAAATACAGAAGGCTCAATCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCAAACAACAAACTTGAGCAAGAAAATACAGAAGGCTCAATCTCA  400

seq1  CCCTGACTCCTGAGACACAGAAGTATGGTGCTCAGGAGCTGCTAAACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACTCCTGAGACACAGAAGTATGGTGCTCAGGAGCTGCTAAACCTT  450

seq1  GCTTTATATCTTTCCATTGGCTCAGGCTATCCCTTCCAACAAACTCTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATATCTTTCCATTGGCTCAGGCTATCCCTTCCAACAAACTCTGAA  500

seq1  TAGTCTACCCAGTGTTTGCATGTAGTTCGATGGTTTGTTCTAGGGAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTACCCAGTGTTTGCATGTAGTTCGATGGTTTGTTCTAGGGAACCA  550

seq1  TCAAAGCTGAATGTCATGGCATTGGCTGTAAGACAGACAGAAGAATGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCTGAATGTCATGGCATTGGCTGTAAGACAGACAGAAGAATGGGT  600

seq1  TGCTTGGCAACCTACTAGTCACAGATCTCTGAAGTGGGGACAGTCTTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGCAACCTACTAGTCACAGATCTCTGAAGTGGGGACAGTCTTGTA  650

seq1  AGAGACTCTCAGAACTCTCAGACTGTGAGGTCTCTGCTATCTGGGAGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTCTCAGAACTCTCAGACTGTGAGGTCTCTGCTATCTGGGAGTTA  700

seq1  GCATCAGAACGATCAAATGATGGGTGCACAGCTGCTGTTTGACAGAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGAACGATCAAATGATGGGTGCACAGCTGCTGTTTGACAGAAAGG  750

seq1  ATGTCAGGGGAACCCAGCTTGGTGTCAGGAGAGCAGTCAGGGAATACAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGGGGAACCCAGCTTGGTGTCAGGAGAGCAGTCAGGGAATACAAA  800

seq1  TCAGAGTCCACCTTCATCTAAGCCAATGGTTCTCAGCCTTCCCAGTGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTCCACCTTCATCTAAGCCAATGGTTCTCAGCCTTCCCAGTGCTG  850

seq1  TGCGCGACCCTTTAATGCAGGTCCTCAGGTGGTGGTGACCCCAGCCATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCGACCCTTTAATGCAGGTCCTCAGGTGGTGGTGACCCCAGCCATAA  900

seq1  AACTATTGTTGCTACTTCATAACTGTAATTTTGCTATTGTCATGGATCAC  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AACTATTGTTGCTACTTCATAACTGTAATTTTGCTA-TGTCATGGATCAC  949

seq1  AATATAGATACTTTTGGAGATAGAGGCTTGCCATAGGGGTCGGGATG-CA  999
       |||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  -ATATAGATACTTTTGGAGATAGAGGCTTGCCATAGGGGTCGGGATGCCA  998

seq1  CAGGTTGAGAACCTCCCATAAAGACTTCATCATCAGCAATTATAGCCATT  1049
      |||  |||| ||||||||| ||||| ||||||||||| |||||||||| |
seq2  CAG--TGAG-ACCTCCCAT-AAGAC-TCATCATCAGC-ATTATAGCCA-T  1041

seq1  CAGGTGATAT-CTCCAGGTTCTCAGAACTAATTTTAAAGAAATCGAGAAG  1098
      |||   |||| |||||||| |||||| |||||||  ||||||||||||||
seq2  CAGTGAATATCCTCCAGGTCCTCAGACCTAATTT--AAGAAATCGAGAAG  1089

seq1  ACTGGGTCCAAAGTACTTCTTCTGGATGAGACCTA-TAACATTCTTCCAA  1147
      ||| ||||| ||||||||||| ||||||||||||| ||||| ||||||||
seq2  ACT-GGTCC-AAGTACTTCTT-TGGATGAGACCTATTAACA-TCTTCCAA  1135

seq1  GAGAA-CAAACACTGCTTTGGGCCTGG-CATTGTGTG  1182
      ||||| ||||| |||| |||||||||| |||||||||
seq2  GAGAACCAAACCCTGC-TTGGGCCTGGCCATTGTGTG  1171

seq1: chr6_83756392_83756531
seq2: B6Ng01-118P04.g_76_215 (reverse)

seq1  CTTCCTCCCCACCCCCCAAAGTTAATAGGGTCAAATAATCACAGAACTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCCCACCCCCCAAAGTTAATAGGGTCAAATAATCACAGAACTCA  50

seq1  GTCTCTAATAAATGAATACTGAGACCAGGCAGACTAGCAGCTATTTAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTAATAAATGAATACTGAGACCAGGCAGACTAGCAGCTATTTAGAA  100

seq1  TGCTTTCTATTGCTGTATAAGAATTTACACAGCAATCTAA  140
      ||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTATTGCTGTATAAGAATTTACACAGCAATCTAA  140