BAC Information

Click to search

BAC

Clone NameB6Ng01-119A12
Chromosome6 (Build37)
Map Location 16,012,152 - 16,221,055
singlet/doubletdoublet
Overlap geneLOC100041116
Upstream geneFoxp2, Mdfic
Downstream geneTcfec, EG435881, Tes, EG232599
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119A12.bB6Ng01-119A12.g
ACCDH923349DH923350
length1,100260
definitionDH923349|Mus musculus domesticus DNA, BAC clone: B6Ng01-119A12, 5' end.DH923350|Mus musculus domesticus DNA, BAC clone: B6Ng01-119A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,219,947 - 16,221,055)(16,012,152 - 16,012,411)
sequence
gaattccaggaaagctttggtcctgctaatcagcccaaacacatagaact
agaacactaagtactagacacacttctaatttttttgtcatgtgttcact
ttacttttaaattcaggctaagtagtagacaaaatgttaacaattcatac
taatataatcccattctctaagaatttagtcaaggaattttctctttaaa
attatgcaaaaatcagtacatttatatcagagaggaggtccacaggaatt
ttcaggaactttcatgtatataaattcctgagatatcaatatatgtagaa
gtagacaatgagtgggggttgaggggcacaaaacatttgaaatataaatg
taaaatcctttctcagatttgaagtgcttgtcattcaccattaatgagat
tatcactaccatagagcagcagttctcaacctgtggcttacatatcagat
atcataaatgtcagatatttacattatgattcataggagtgacaatattg
cagttatgaaatagcaacaaaatagttttatggttggtgtcagcacaaca
cattaaactgtattaacggtattaaaatgtcatagcattgagaagttgag
aaccactaccacagtggatgtttgtagctcgcaattaattgatcatcaat
gatgctagaacaagacccaaattgttaaaacacagagaaaaacagtaaga
gtgtataatgcaaaacaaggctgaaaggaaacactgaacaggatagagcc
atgtctgggaaacactattatttcccagtgatgaggaactcacaggaatc
aaccttatatatacacatgtattatattatttatgtacatttatataggc
acaaattactaaaaacagcatttaatttgctttatagtaaaatcttagta
gctcattgtgtatggaatacaaatggacagacctctttagatatacaaat
gaatgcttttatacattgcctcttataggagacagtcagtctactgaaat
tccctgagtatatttcagagccatagagtactgtctgatgatgttcagtt
tcaatgtgttttctgatagctttttaaaaattgttctatattctttttga

caggtgaaggcagagtaaagggaaagtcataggaaagaatgagaggaaaa
ggttctcttcagaaaatctacaaggttcacagaccctgaggcaggaatcg
cggtcagattgctgaagaaacacaagtagtccaggttaccacacgatgaa
tacagggaggaaaggttcggagaatgcgccaggcatggatattttaggag
ctaagagactttgggaagcagtctggggacgtttgttggggtcgtgtgtg
tgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_16219947_16221055
seq2: B6Ng01-119A12.b_48_1147 (reverse)

seq1  TCAAAAAGAATAATTAGAACAATTTTTTTAAAAAGCTATTCAGAAAACAC  50
      ||||||||||||  ||||||||  |||||||||||||| |||||||||||
seq2  TCAAAAAGAATA--TAGAACAA--TTTTTAAAAAGCTA-TCAGAAAACAC  45

seq1  ATTGAAACTGAACATCATCCAGACAGTACTCTATGGCTCTTGAAATATAC  100
      |||||||||||||||||| |||||||||||||||||||| ||||||||||
seq2  ATTGAAACTGAACATCAT-CAGACAGTACTCTATGGCTC-TGAAATATAC  93

seq1  TCAGGGAATTTCAGTAGACTGACTGTCTTCCTATAAGAGGCAATGTTATA  150
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  TCAGGGAATTTCAGTAGACTGACTGTC-TCCTATAAGAGGCAATG-TATA  141

seq1  AAAGCATTCATTTGTATATCTAAAGAGGTCTGTCCATTTGTATTCCATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTCATTTGTATATCTAAAGAGGTCTGTCCATTTGTATTCCATAC  191

seq1  ACAATGAGCTACTAAGATTTTACTATAAAGCAAATTAAATGCTGTTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAGCTACTAAGATTTTACTATAAAGCAAATTAAATGCTGTTTTTA  241

seq1  GTAATTTGTGCCTATATAAATGTACATAAATAATATAATACATGTGTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTGTGCCTATATAAATGTACATAAATAATATAATACATGTGTATA  291

seq1  TATAAGGTTGATTCCTGTGAGTTCCTCATCACTGGGAAATAATAGTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGTTGATTCCTGTGAGTTCCTCATCACTGGGAAATAATAGTGTTT  341

seq1  CCCAGACATGGCTCTATCCTGTTCAGTGTTTCCTTTCAGCCTTGTTTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACATGGCTCTATCCTGTTCAGTGTTTCCTTTCAGCCTTGTTTTGC  391

seq1  ATTATACACTCTTACTGTTTTTCTCTGTGTTTTAACAATTTGGGTCTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACACTCTTACTGTTTTTCTCTGTGTTTTAACAATTTGGGTCTTGT  441

seq1  TCTAGCATCATTGATGATCAATTAATTGCGAGCTACAAACATCCACTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCATCATTGATGATCAATTAATTGCGAGCTACAAACATCCACTGTG  491

seq1  GTAGTGGTTCTCAACTTCTCAATGCTATGACATTTTAATACCGTTAATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGGTTCTCAACTTCTCAATGCTATGACATTTTAATACCGTTAATAC  541

seq1  AGTTTAATGTGTTGTGCTGACACCAACCATAAAACTATTTTGTTGCTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAATGTGTTGTGCTGACACCAACCATAAAACTATTTTGTTGCTATT  591

seq1  TCATAACTGCAATATTGTCACTCCTATGAATCATAATGTAAATATCTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACTGCAATATTGTCACTCCTATGAATCATAATGTAAATATCTGAC  641

seq1  ATTTATGATATCTGATATGTAAGCCACAGGTTGAGAACTGCTGCTCTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGATATCTGATATGTAAGCCACAGGTTGAGAACTGCTGCTCTATG  691

seq1  GTAGTGATAATCTCATTAATGGTGAATGACAAGCACTTCAAATCTGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGATAATCTCATTAATGGTGAATGACAAGCACTTCAAATCTGAGAA  741

seq1  AGGATTTTACATTTATATTTCAAATGTTTTGTGCCCCTCAACCCCCACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTTACATTTATATTTCAAATGTTTTGTGCCCCTCAACCCCCACTC  791

seq1  ATTGTCTACTTCTACATATATTGATATCTCAGGAATTTATATACATGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTACTTCTACATATATTGATATCTCAGGAATTTATATACATGAAA  841

seq1  GTTCCTGAAAATTCCTGTGGACCTCCTCTCTGATATAAATGTACTGATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGAAAATTCCTGTGGACCTCCTCTCTGATATAAATGTACTGATTT  891

seq1  TTGCATAATTTTAAAGAGAAAATTCCTTGACTAAATTCTTAGAGAATGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATAATTTTAAAGAGAAAATTCCTTGACTAAATTCTTAGAGAATGGG  941

seq1  ATTATATTAGTATGAATTGTTAACATTTTGTCTACTACTTAGCCTGAATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTAGTATGAATTGTTAACATTTTGTCTACTACTTAGCCTGAATT  991

seq1  TAAAAGTAAAGTGAACACATGACAAAAAAATTAGAAGTGTGTCTAGTACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTAAAGTGAACACATGACAAAAAAATTAGAAGTGTGTCTAGTACT  1041

seq1  TAGTGTTCTAGTTCTATGTGTTTGGGCTGATTAGCAGGACCAAAGCTTTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTCTAGTTCTATGTGTTTGGGCTGATTAGCAGGACCAAAGCTTTC  1091

seq1  CTGGAATTC  1109
      |||||||||
seq2  CTGGAATTC  1100

seq1: chr6_16012152_16012411
seq2: B6Ng01-119A12.g_75_334

seq1  CAGGTGAAGGCAGAGTAAAGGGAAAGTCATAGGAAAGAATGAGAGGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGAAGGCAGAGTAAAGGGAAAGTCATAGGAAAGAATGAGAGGAAAA  50

seq1  GGTTCTCTTCAGAAAATCTACAAGGTTCACAGACCCTGAGGCAGGAATCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCTTCAGAAAATCTACAAGGTTCACAGACCCTGAGGCAGGAATCG  100

seq1  CGGTCAGATTGCTGAAGAAACACAAGTAGTCCAGGTTACCACACGATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCAGATTGCTGAAGAAACACAAGTAGTCCAGGTTACCACACGATGAA  150

seq1  TACAGGGAGGAAAGGTTCGGAGAATGCGCCAGGCATGGATATTTTAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGAGGAAAGGTTCGGAGAATGCGCCAGGCATGGATATTTTAGGAG  200

seq1  CTAAGAGACTTTGGGAAGCAGTCTGGGGACGTTTGTTGGGGTCGTGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGACTTTGGGAAGCAGTCTGGGGACGTTTGTTGGGGTCGTGTGTG  250

seq1  TGTGTGTGTG  260
      ||||||||||
seq2  TGTGTGTGTG  260