BAC Information

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BAC

Clone NameB6Ng01-119C21
Chromosome6 (Build37)2 (Build37)
Map Location 18,835,443 - 18,835,96894,622,361 - 94,623,557
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119C21.bB6Ng01-119C21.g
ACCDH923463DH923464
length1,0311,177
definitionDH923463|Mus musculus domesticus DNA, BAC clone: B6Ng01-119C21, 5' end.DH923464|Mus musculus domesticus DNA, BAC clone: B6Ng01-119C21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,443 - 18,835,968)(94,622,361 - 94,623,557)
sequence
gaattctttgttcagctctgagccccatttttaatggggttatttgattt
tctggagtccaccctcttgagttctttatatatgtttgatattagtcccc
catctgatttgggataggtaaagatcctttcccaatctgtttttggtctt
tttgtcttattgacggtgtcttttgtcttacagaagctttgcaattttat
gaggtcctatttgtcgattctagatcttacaacacaagccattgctgttc
tgttcaggaatttttttcccctgtgcccatatcttccagactttccccca
ctttctcctctataagtttcactgtctctggttttatgtggagttccttg
atccacttacatttgaccttagtacaaggatataggaatggatcaatttg
cattcttctatatgataactgccagttgtgccagcaccatttgttgaaaa
tgctgtctttcttctactggatggttttagctcccttgtcaaagatcaag
taaccataggtgtgtgggttcatctctgggtcttcaattctattctattg
gtctacttgtctgtcactataccagtaccatgcagttttttatcacattt
gctctgtagtacagctttaggtcaggcatggtgatttcaccagaggttct
tttatccttgagaagagtttttgctatcctaggttttttgatattccaga
tgaatttgcagattgccctttctaattcattggaattttgatggggattg
cattgaatctgtagattgcttttggcaagatatccatttttactatattg
atcctgccaatccatgagcatgggagttctttccatcttctgagatcttc
cttaatttctttcttcagagacttgaagttcttatcatacagatctttca
cttccttagttagagtcacaccaaggtattttatatcatttgtgactact
gagaaggtgttgtttccctaatttctttctcagtctgtttatcttttgtg
tagagaagccattgacttgtttgagtaattt
gaattcccagcagtgatgcctgaaagagcctccttcccaaagttttcctg
aatgtatctgtgccccatctcatcaatattgaaaataaactgcttttaca
ttttttatacactctatgaaatacccccaaacactttaaaagtcagcttg
catttaaataaagtgtaatttattgcaaaaactaaaatcacaaggtcaat
tatggctatctttgggtatagtctgagcaaaagtcccctttctgtaggtg
agttgcatacccctcacccttttccaattccatttgccattcttgacctg
tgctctttttcttaagagcctactcctatcttccagcagtcattagtatt
gtctgtccctaatttatatattctttttatattgaaattcctagttttct
ataagaaaagctgcagatattttcttaaaactaattattttaatggagat
ctagataaactgattagaagaagcaggcatctatgttagatgagttgttt
gtttatccatgggaagtttgggggcagaggcagtatcttcattggaaaga
atgggtgggaaatcaatgtacactataggcaattgagtttgaaatcgaag
aaagagatcagagctagagatacacttttgagaactggggatttgaatta
atttgatttgcaattaactgcagagtaaggggagagaaatcacacattat
tctattggaccaaacacaagtgcgctttatttgatgaatagtacacgtgc
agaagtcatgcataatcttcctcataggtaattttcaatatttatttatt
aagattattttatttggatgtgtgttcctgtgtgtatgtatatgtaccac
atgcatacaggtgcctgcagaggccagaagggggcactgaataccctgaa
agtggagtacaagctgtcatgtgagtgctgggaatcaatttaggtctctg
cagaacagcaagtatttttacccacagctgcatctctcagatcctagtca
tacattttgattctgacaccataccgtttagagcatggacactttgccat
gctgcagctttgactgatagaatctctatccttcttgtgtcagtgattca
ttctttaaaggaaaaactactgggttataatacatgggcataaagataat
ggtccaaacatcgaacttctcccaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835443_18835968
seq2: B6Ng01-119C21.b_45_572 (reverse)

seq1  CAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCT  50
      |||||||||||||||||||||||||| |||||||||| ||||||||||||
seq2  CAGAGATGAACCCACACACCTATGGTTACTTGATCTTTGACAAGGGAGCT  50

seq1  AAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCA  100
      ||||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  AAAACCATCCAGTAGAAGAAAGACAGCATTTTCAACAAATGGTGCTGGCA  100

seq1  CAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCTC  150
      |||||||  |||||| | ||||||||||  ||| ||||||| | ||| ||
seq2  CAACTGGCAGTTATCATATAGAAGAATGCAAATTGATCCATTCCTATATC  150

seq1  CATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCA  200
      | |||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  CTTGTACTAAGGTCAAATGTAAGTGGATCAAGGAACTCCACATAAAACCA  200

seq1  GAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATAT  250
      |||||| |||||||||||||||||||||||||| |||| || ||||||||
seq2  GAGACAGTGAAACTTATAGAGGAGAAAGTGGGGGAAAGTCTGGAAGATAT  250

seq1  GGGCAGAGGGG--AAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGT  297
      ||||| |||||  |||| ||||||||||||||||||||||| |||| |||
seq2  GGGCACAGGGGAAAAAAATTCCTGAACAGAACAGCAATGGCTTGTGTTGT  300

seq1  GAGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCA  347
       || |  ||||||||||||| |||||| || ||| | ||||| ||||| |
seq2  AAGATCTAGAATCGACAAATAGGACCTCATAAAATTGCAAAGCTTCTGTA  350

seq1  AGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAA  397
      || ||||||||||||||||||||||||||||||||  |||||||||||||
seq2  AGACAAAAGACACCGTCAATAAGACAAAAAGACCAAAAACAGATTGGGAA  400

seq1  AGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATA  447
      ||||||||||||||||| ||||||||| ||||||||||||| ||||||||
seq2  AGGATCTTTACCTATCCCAAATCAGATGGGGGACTAATATCAAACATATA  450

seq1  TAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATA  497
      |||||||||||||| |||||||| |||||||||||||||||||||||| |
seq2  TAAAGAACTCAAGAGGGTGGACTCCAGAAAATCAAATAACCCCATTAA-A  499

seq1  AATGGGGCTCAGAACTGAACAAAGAATTC  526
      ||||||||||||| |||||||||||||||
seq2  AATGGGGCTCAGAGCTGAACAAAGAATTC  528

seq1: chr2_94622361_94623557
seq2: B6Ng01-119C21.g_64_1240 (reverse)

seq1  ACTTTGGAGAAGTTCTGATGTTTTGGCACATTATTCTTTATGACCATGTA  50
      |||| |||||||||| |||| |||||  ||||| |||||||| |||||||
seq2  ACTTGGGAGAAGTTC-GATG-TTTGGACCATTA-TCTTTATGCCCATGTA  47

seq1  TTTTATAACACAGTAGTTTTTACTTTTAAAGGAATGAATCACTGACATAC  100
        ||||||| ||||||||||| ||||  || |||||||||||||||  ||
seq2  --TTATAACCCAGTAGTTTTTCCTTT--AAAGAATGAATCACTGAC--AC  91

seq1  AAGAAGAGATAGAGATTCTATCAGTCAAAGCTGCAGCATGGCAAAGATGT  150
      |||||| ||||||||||||||||||||||||||||||||||||||| |||
seq2  AAGAAG-GATAGAGATTCTATCAGTCAAAGCTGCAGCATGGCAAAG-TGT  139

seq1  CCATTGCTCTAAACGGTATGGTTGTCAGAATCAAAATGTATGACTTAGGA  200
      ||| ||||||||||||||||| |||||||||||||||||||||| |||||
seq2  CCA-TGCTCTAAACGGTATGG-TGTCAGAATCAAAATGTATGAC-TAGGA  186

seq1  TCTGGAGAGATGGCAGCTGTGGGTAAAAATACTTGCTGTTCTTGCAGAGG  250
      ||| ||||||| ||||||||||||||||||||||||||||| |||||| |
seq2  TCT-GAGAGAT-GCAGCTGTGGGTAAAAATACTTGCTGTTC-TGCAGA-G  232

seq1  ACCTAAATTTGATTCCCAGCACTCACATGACAGCTTGTAACTCCACTTTC  300
      ||||||| |||||||||||||||||||||||||||||| |||||||||||
seq2  ACCTAAA-TTGATTCCCAGCACTCACATGACAGCTTGT-ACTCCACTTTC  280

seq1  AGGGTATTCAGTGCCCTCTTCTGGCCTCTGCAGGCACCTGTATGCATGTG  350
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGGGTATTCAGTGCCCCCTTCTGGCCTCTGCAGGCACCTGTATGCATGTG  330

seq1  GTACATATACATACACACAGGAACACACATCCAAATAAAATAATCTTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATATACATACACACAGGAACACACATCCAAATAAAATAATCTTAAT  380

seq1  AAATAAATATTGAAAATTACCTATGAGGAAGATTATGCATGACTTCTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATATTGAAAATTACCTATGAGGAAGATTATGCATGACTTCTGCA  430

seq1  CGTGTACTATTCATCAAATAAAGCGCACTTGTGTTTGGTCCAATAGAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTACTATTCATCAAATAAAGCGCACTTGTGTTTGGTCCAATAGAATA  480

seq1  ATGTGTGATTTCTCTCCCCTTACTCTGCAGTTAATTGCAAATCAAATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGATTTCTCTCCCCTTACTCTGCAGTTAATTGCAAATCAAATTAA  530

seq1  TTCAAATCCCCAGTTCTCAAAAGTGTATCTCTAGCTCTGATCTCTTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATCCCCAGTTCTCAAAAGTGTATCTCTAGCTCTGATCTCTTTCTT  580

seq1  CGATTTCAAACTCAATTGCCTATAGTGTACATTGATTTCCCACCCATTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTTCAAACTCAATTGCCTATAGTGTACATTGATTTCCCACCCATTCT  630

seq1  TTCCAATGAAGATACTGCCTCTGCCCCCAAACTTCCCATGGATAAACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATGAAGATACTGCCTCTGCCCCCAAACTTCCCATGGATAAACAAA  680

seq1  CAACTCATCTAACATAGATGCCTGCTTCTTCTAATCAGTTTATCTAGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCATCTAACATAGATGCCTGCTTCTTCTAATCAGTTTATCTAGATC  730

seq1  TCCATTAAAATAATTAGTTTTAAGAAAATATCTGCAGCTTTTCTTATAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTAAAATAATTAGTTTTAAGAAAATATCTGCAGCTTTTCTTATAGA  780

seq1  AAACTAGGAATTTCAATATAAAAAGAATATATAAATTAGGGACAGACAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGGAATTTCAATATAAAAAGAATATATAAATTAGGGACAGACAAT  830

seq1  ACTAATGACTGCTGGAAGATAGGAGTAGGCTCTTAAGAAAAAGAGCACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATGACTGCTGGAAGATAGGAGTAGGCTCTTAAGAAAAAGAGCACAG  880

seq1  GTCAAGAATGGCAAATGGAATTGGAAAAGGGTGAGGGGTATGCAACTCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGAATGGCAAATGGAATTGGAAAAGGGTGAGGGGTATGCAACTCAC  930

seq1  CTACAGAAAGGGGACTTTTGCTCAGACTATACCCAAAGATAGCCATAATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAAAGGGGACTTTTGCTCAGACTATACCCAAAGATAGCCATAATT  980

seq1  GACCTTGTGATTTTAGTTTTTGCAATAAATTACACTTTATTTAAATGCAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGTGATTTTAGTTTTTGCAATAAATTACACTTTATTTAAATGCAA  1030

seq1  GCTGACTTTTAAAGTGTTTGGGGGTATTTCATAGAGTGTATAAAAAATGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTTTTAAAGTGTTTGGGGGTATTTCATAGAGTGTATAAAAAATGT  1080

seq1  AAAAGCAGTTTATTTTCAATATTGATGAGATGGGGCACAGATACATTCAG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGTTTATTTTCAATATTGATGAGATGGGGCACAGATACATTCAG  1130

seq1  GAAAACTTTGGGAAGGAGGCTCTTTCAGGCATCACTGCTGGGAATTC  1197
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTTTGGGAAGGAGGCTCTTTCAGGCATCACTGCTGGGAATTC  1177