BAC Information

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BAC

Clone NameB6Ng01-119J11
Chromosome6 (Build37)
Map Location 101,022,273 - 101,159,752
singlet/doubletdoublet
Overlap geneEG545870, LOC100043321, Pdzrn3
Upstream geneRybp, Shq1, LOC625221, BC049816, Ppp4r2
Downstream geneEG666084, Cntn3, EG666123
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119J11.bB6Ng01-119J11.g
ACCDH923764DH923765
length952305
definitionDH923764|Mus musculus domesticus DNA, BAC clone: B6Ng01-119J11, 5' end.DH923765|Mus musculus domesticus DNA, BAC clone: B6Ng01-119J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,022,273 - 101,023,225)(101,159,448 - 101,159,752)
sequence
gaattctgcagagcaaagaatctgtatgagggaattttgcagggcttggg
ctgggaggaacgtgaggcagtgtgcattttaactagaagacaaaatattt
gaaaggaaactcaaaggagaggtggagcaggaagctgcggttgatgtctg
tccacatgcacagaggctgatgtgagcaaagactgttccgaggcagagac
cggggatggttgggggaaggctccctgatataagtgggatgtgggatctg
ctctgaaatgagaaaagattttaccaaagagcactggggatggattagcc
ccaggaaatgaggtaaagcattcaagaaggaagaagaaaaatgtaaacca
tgctcagatttctttatgttgctggttaaagcatgtgtccaatatgggcg
aaccagagcacacagggcatatctggcagccgctggcctttccaaataaa
gtttgactggaacaccagcacactgctttcatgctgtttctggtttttgt
tgttgcgttgtgacaaggtcagaggttataagtgggaccaaatgacccca
tggctccatatttagtcccttagtgggagatcctctacccactgacatcg
ataaagatataggagatgaaactcaagcagccaataagcgtatattaaaa
aaaaacaaactgttccagccaccagagcaatgcaaattaaaactgcttta
agatttctatctcatccctggcagaatgacactaactaagaaagcataaa
taacagggcagggcagactcctaaggcattcctggcgcctgtggccaagc
ctgacgagcagagatccatcaggcctggggcaggaaggagagatgttaga
ttgtcctctaacctccatgtgtgcattgtcatacacagacatacaccgca
cacacacactgacacacacacacacagatacatatacacccactgaccag
ac
cagcatccggccaaaggggaaagctgtcaacatatccactggagctctga
ctccatctgagagccactgaagaaaacacaaagccatttgccagttgggt
gcccagttcaaaattcatatttaagctcgctctgcctctaacctagtgca
ttccattctgtgtatgtgtttgcttatgtgcctgtgtgtatgtgtgtatg
tttgtgtgtctctacatgtgcacatatggatgtgatatcagaaagcaacc
ttgagtatcattcctcaagacacaagccatgttgggatgtggaggttggg
gagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_101022273_101023225
seq2: B6Ng01-119J11.b_43_994

seq1  GAATTCTGCAGAGCAAAGAATCTGTATGAGGGAATTTTGCAGGGCTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGAGCAAAGAATCTGTATGAGGGAATTTTGCAGGGCTTGGG  50

seq1  CTGGGAGGAACGTGAGGCAGTGTGCATTTTAACTAGAAGACAAAATATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGGAACGTGAGGCAGTGTGCATTTTAACTAGAAGACAAAATATTT  100

seq1  GAAAGGAAACTCAAAGGAGAGGTGGAGCAGGAAGCTGCGGTTGATGTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAAACTCAAAGGAGAGGTGGAGCAGGAAGCTGCGGTTGATGTCTG  150

seq1  TCCACATGCACAGAGGCTGATGTGAGCAAAGACTGTTCCGAGGCAGAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATGCACAGAGGCTGATGTGAGCAAAGACTGTTCCGAGGCAGAGAC  200

seq1  CGGGGATGGTTGGGGGAAGGCTCCCTGATATAAGTGGGATGTGGGATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGATGGTTGGGGGAAGGCTCCCTGATATAAGTGGGATGTGGGATCTG  250

seq1  CTCTGAAATGAGAAAAGATTTTACCAAAGAGCACTGGGGATGGATTAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAATGAGAAAAGATTTTACCAAAGAGCACTGGGGATGGATTAGCC  300

seq1  CCAGGAAATGAGGTAAAGCATTCAAGAAGGAAGAAGAAAAATGTAAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAATGAGGTAAAGCATTCAAGAAGGAAGAAGAAAAATGTAAACCA  350

seq1  TGCTCAGATTTCTTTATGTTGCTGGTTAAAGCATGTGTCCAATATGGGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGATTTCTTTATGTTGCTGGTTAAAGCATGTGTCCAATATGGGCG  400

seq1  AACCAGAGCACACAGGGCATATCTGGCAGCCGCTGGCCTTTCCAAATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAGCACACAGGGCATATCTGGCAGCCGCTGGCCTTTCCAAATAAA  450

seq1  GTTTGACTGGAACACCAGCACACTGCTTTCATGCTGTTTCTGGTTTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGACTGGAACACCAGCACACTGCTTTCATGCTGTTTCTGGTTTTTGT  500

seq1  TGTTGCGTTGTGACAAGGTCAGAGGTTATAAGTGGGACCAAATGACCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCGTTGTGACAAGGTCAGAGGTTATAAGTGGGACCAAATGACCCCA  550

seq1  TGGCTCCATATTTAGTCCCTTAGTGGGAGATCCTCTACCCACTGACATCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCATATTTAGTCCCTTAGTGGGAGATCCTCTACCCACTGACATCG  600

seq1  ATAAAGATATAGGAGATGAAACTCAAGCAGCCAATAAGCGTATATTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGATATAGGAGATGAAACTCAAGCAGCCAATAAGCGTATATTAAAA  650

seq1  AAAAACAAACTGTTCCAGCCACCAGAGCAATGCAAATTAAAACTGCTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAACTGTTCCAGCCACCAGAGCAATGCAAATTAAAACTGCTTTA  700

seq1  AGA-TTCTATCTCATCCCTGGCAGAATGACACTAACTAAGAAAGCATAAA  749
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTATCTCATCCCTGGCAGAATGACACTAACTAAGAAAGCATAAA  750

seq1  TAACAGGGCAGGGCAGACTCCTAAGGCAATCCTGGCGCCTGTGGCCAAGC  799
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAACAGGGCAGGGCAGACTCCTAAGGCATTCCTGGCGCCTGTGGCCAAGC  800

seq1  CTGACGAGCAGAGATCCATCAGGCCTGGGGCAGGAAGGAGAGATGTTAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACGAGCAGAGATCCATCAGGCCTGGGGCAGGAAGGAGAGATGTTAGA  850

seq1  TTGTCCTCTAACCTCCATGTGTGCATTGTCATACACAGACATACACACGC  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTGTCCTCTAACCTCCATGTGTGCATTGTCATACACAGACATACAC-CGC  899

seq1  ACACACACACTGACACACACACACACAGATACATATACACACACTGACAC  949
      |||||||||||||||||||||||||||||||||||||||| ||||||| |
seq2  ACACACACACTGACACACACACACACAGATACATATACACCCACTGAC-C  948

seq1  AGAC  953
      ||||
seq2  AGAC  952

seq1: chr6_101159448_101159752
seq2: B6Ng01-119J11.g_71_375 (reverse)

seq1  CACTCCCCAACCTCCACATCCCAACATGGCTTGTGTCTTGAGGAATGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCCAACCTCCACATCCCAACATGGCTTGTGTCTTGAGGAATGATA  50

seq1  CTCAAGGTTGCTTTCTGATATCACATCCATATGTGCACATGTAGAGACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGGTTGCTTTCTGATATCACATCCATATGTGCACATGTAGAGACAC  100

seq1  ACAAACATACACACATACACACAGGCACATAAGCAAACACATACACAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACATACACACATACACACAGGCACATAAGCAAACACATACACAGAA  150

seq1  TGGAATGCACTAGGTTAGAGGCAGAGCGAGCTTAAATATGAATTTTGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGCACTAGGTTAGAGGCAGAGCGAGCTTAAATATGAATTTTGAAC  200

seq1  TGGGCACCCAACTGGCAAATGGCTTTGTGTTTTCTTCAGTGGCTCTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACCCAACTGGCAAATGGCTTTGTGTTTTCTTCAGTGGCTCTCAGA  250

seq1  TGGAGTCAGAGCTCCAGTGGATATGTTGACAGCTTTCCCCTTTGGCCGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCAGAGCTCCAGTGGATATGTTGACAGCTTTCCCCTTTGGCCGGA  300

seq1  TGCTG  305
      |||||
seq2  TGCTG  305