BAC Information

Click to search

BAC

Clone NameB6Ng01-119O01
Chromosome1 (Build37)6 (Build37)
Map Location 144,925,292 - 144,926,48081,431,686 - 81,431,889
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC639376
Downstream geneLOC545369, Cdc73, B3galt2, LOC623138, Glrx2, Trove2, Uchl5, Rgs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119O01.bB6Ng01-119O01.g
ACCDH923972DH923973
length1,189867
definitionDH923972|Mus musculus domesticus DNA, BAC clone: B6Ng01-119O01, 5' end.DH923973|Mus musculus domesticus DNA, BAC clone: B6Ng01-119O01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(144,925,292 - 144,926,480)(81,431,686 - 81,431,889)
sequence
gaattctctcggggggcagggggagtgccctaggagagatgaaggtgggc
aaggaaggggacagcatttgaaatggaaagaaagaaagagagagagagag
agagagagagagagagagagagaagaaagaaagaaagaaagaaagaaaga
aagaaagaaagaaagaaagaaagaaagaaaaacaaagacttttttaaaga
aaaatatcacgtgaagacatagacacattaggacacatgaaaattttaga
aactgagtgatgaatgcagatacagggcaaggaacaccaatagtgtcagc
caccatcagaactacgaagggacaaggataaagtcccagtaaagctccgg
ggacagcatggccctcttagcatgtattattttgtacttcagcctccaga
acaatgagaaaagcaaatctgctgtttcaagctgcacagtgtatagaacc
acaacaacaacaacaaaaagtacagtcagaagctgggttcaaaaccctac
atgtgcaggagggggtggagaaagaggagtgactacacacatttgatcag
cttctctgagattcctggtcatgagcagcctctgaactgacttaagcaaa
gggatccctttaatactagttaaatgaagaacagcacatcagatgcatca
gggcttggtggattttacatttaaaaatcatacccttctggttctgtggc
ttactaaaactttgttacacatgcaaggttaacaggataattaaagtcat
tcccagaagatttaggtcagaaaaataattaacctgaatcacctagataa
taagaagggaaggtatttttctcttgacctgtatataaaaaaatgctttc
aatttccatgacttttgatgcataggcatagttttatttaaaatctaaaa
aacaaataaataaataaaggtccatataaaaattatgcactttgcagtca
tgcttttttctttggatatatccaataatcattcaggatgtctgagttca
cattaattaaatcctagttattcatgcacttttcatctggcaacaatcat
tcttctttattttttaagctagtaaccatacatcaagatctggaacaccc
ctcaaagtcctggagcacctaaaatgcctatgcttgaacttttttctttc
tggagcagaatggtacatatgcctataatatcatggaaa
gaattctcacctgaggaataccgaatggctgagtagcacctgaaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacag
cagatgctggcgaggatgtggagaaagaggaacactcctccattgttggt
gggattgcaagcttgtacaaccactctggaaatcagtctggcagttcctc
agaaaattggacatagtattacaggaggatcctgcaatacttctactggg
catatatccagaagatgttccaaccagtaagaaggacacatgctccacta
tgttcataacagccttatctataatagccagaagctggaaagaacccaga
tgcccctcaacagaggaatggatacagaaaatgtggtacatttacacaat
ggagtactactcagctattaaaaataatgaatttatgaaattcttaggca
aatggatggacctggagggcatcatccttagtgacgtaacctaatcacaa
aggaactttcacaatatgtactcacaaagagacaaaaagacttcatcaat
atgttacagcagctagagctctgggcaacatttgctgacttcttagtctg
ccaagtaccacagaattacagaacacagctcaggtatattccaggcacac
agtgggtttgtatcatgtagaataacctgaacttttctttctgcttcatg
atgcattgctagacaaacttgtgctttgtccaggaataaggtttacttgg
gttgtcagggctgctcactgtacatatagagagagagagagagagagaga
gagagagagagagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_144925292_144926480
seq2: B6Ng01-119O01.b_49_1237

seq1  GAATTCTCTCGGGGGGCAGGGGGAGTGCCCTAGGAGAGATGAAGGTGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCGGGGGGCAGGGGGAGTGCCCTAGGAGAGATGAAGGTGGGC  50

seq1  AAGGAAGGGGACAGCATTTGAAATGGAAAGAAAGAAAGAGAGAGAGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGGGACAGCATTTGAAATGGAAAGAAAGAAAGAGAGAGAGAGAG  100

seq1  AGAGAGAGAGAGAGAGAGAGAG----AAGAAAGAAAGAAAGAAAGAAAGA  146
      ||||||||||||||||||||||    ||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAAGAAAGAAAGAAAGAAAGAAAGAAAGA  150

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAACAAAGACTTTTTTAAAGA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAACAAAGACTTTTTTAAAGA  200

seq1  AAAATATCACGTGAAGACATAGACACATTAGGACACATGAAAATTTTAGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCACGTGAAGACATAGACACATTAGGACACATGAAAATTTTAGA  250

seq1  AACTGAGTGATGAATGCAGATACAGGGCAAGGAACACCAATAGTGTCAGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGTGATGAATGCAGATACAGGGCAAGGAACACCAATAGTGTCAGC  300

seq1  CACCATCAGAACTACGAAGGGACAAGGATAAAGTCCCAGTAAAGCTCCGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCAGAACTACGAAGGGACAAGGATAAAGTCCCAGTAAAGCTCCGG  350

seq1  GGACAGCATGGCCCTCTTAGCATGTATTATTTTGTACTTCAGCCTCCAGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCATGGCCCTCTTAGCATGTATTATTTTGTACTTCAGCCTCCAGA  400

seq1  ACAATGAGAAAAGCAAATCTGCTGTTTCAAGCTGCACAGTGTATAGAACC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAGAAAAGCAAATCTGCTGTTTCAAGCTGCACAGTGTATAGAACC  450

seq1  ACAACAACAACAACAAAAAGTACAGTCAGAAGCTGGGTTCAAAACCCTAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACAACAACAAAAAGTACAGTCAGAAGCTGGGTTCAAAACCCTAC  500

seq1  ATGTGCAGGAGGGGGTGGAGAAAGAGGAGTGACTACACACATTTGATCAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCAGGAGGGGGTGGAGAAAGAGGAGTGACTACACACATTTGATCAG  550

seq1  CTTCTCTGAGATTCCTGGTCATGAGCAGCCTCTGAACTGACTTAAGCAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGAGATTCCTGGTCATGAGCAGCCTCTGAACTGACTTAAGCAAA  600

seq1  GGGATCCCTTTAATACTAGTTAAATGAAGAACAGCACATCAGATGCATCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCCCTTTAATACTAGTTAAATGAAGAACAGCACATCAGATGCATCA  650

seq1  GGGCTTGGTGGATTTTACATTTAAAAATCATACCCTTCTGGTTCTGTGGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGGTGGATTTTACATTTAAAAATCATACCCTTCTGGTTCTGTGGC  700

seq1  TTACTAAAACTTTGTTACACATGCAAGGTTAACAGGATAATTAAAGTCAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAAACTTTGTTACACATGCAAGGTTAACAGGATAATTAAAGTCAT  750

seq1  TCCCAGAAGATTTAGGTCAGAAAAATAATTAACCTGAATCACCTAGATAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAAGATTTAGGTCAGAAAAATAATTAACCTGAATCACCTAGATAA  800

seq1  TAAGAAGGGAAGGTATTTTTCTCTTGACCTGTATATAAAAAAATGC-TTC  845
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TAAGAAGGGAAGGTATTTTTCTCTTGACCTGTATATAAAAAAATGCTTTC  850

seq1  AATTTCCATGACTTTTGATGCATAGGCATAGTTTTATTTAAAATCTAAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCATGACTTTTGATGCATAGGCATAGTTTTATTTAAAATCTAAAA  900

seq1  AACAAATAAATAAATAAAGGTCCATATAAAAA-TATGCAC-TTGCAGTCA  943
      |||||||||||||||||||||||||||||||| ||||||| |||||||||
seq2  AACAAATAAATAAATAAAGGTCCATATAAAAATTATGCACTTTGCAGTCA  950

seq1  TGCTATTTTCTTTGGATATATCCAATAATCATTCA-GATGTCTGAGTTCA  992
      |||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGCTTTTTTCTTTGGATATATCCAATAATCATTCAGGATGTCTGAGTTCA  1000

seq1  CATTAATTAATTTCCTAGTTATCCTTGCACTTTTCATCTGCAAACAATTC  1042
      ||||||||||  |||||||||| | |||||||||||||||  ||||| ||
seq2  CATTAATTAA-ATCCTAGTTATTCATGCACTTTTCATCTGGCAACAA-TC  1048

seq1  ATTCTTCTTTATTTTTTAAGCTAGTTAACCATACATCAAAGATCTTGGAA  1092
      |||||||||||||||||||||||| |||||||||||| |||||| |||||
seq2  ATTCTTCTTTATTTTTTAAGCTAG-TAACCATACATC-AAGATC-TGGAA  1095

seq1  CA-ACCTCAAAGTTCTTGGAGCAACCTAGATGCTTTATGTTTGTACTTTT  1141
      ||  |||||||| || ||||||| |  | ||||  |||| ||| || |||
seq2  CACCCCTCAAAG-TCCTGGAGCACCTAAAATGC-CTATGCTTGAAC-TTT  1142

seq1  TTTTTTTCATGAGAGAAAATGGTACATATGCATAT-ATATCAGGGGAAA  1189
      ||| ||||  |||  | |||||||||||||| ||| |||||| || || 
seq2  TTTCTTTCTGGAG-CAGAATGGTACATATGCCTATAATATCATGGAAA-  1189

seq1: chr6_81431686_81431889
seq2: B6Ng01-119O01.g_440_643 (reverse)

seq1  GTGAGTACATATTGTGCGAGTTCTTTTGTGATTGGGTTACCTCACTCAGG  50
      ||||||||||||||||  ||||| ||||||||| |||||| ||||| |||
seq2  GTGAGTACATATTGTGAAAGTTCCTTTGTGATTAGGTTACGTCACTAAGG  50

seq1  ATGATGCCCTCCAGGTCCATCCATTTGACTAGGAATTTCATAAATCCATT  100
      ||||||||||||||||||||||||||| ||| ||||||||||||| ||||
seq2  ATGATGCCCTCCAGGTCCATCCATTTGCCTAAGAATTTCATAAATTCATT  100

seq1  CTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTCT  150
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTCT  150

seq1  GTATCCATTCCTCTGTTGAGGGGCACTTGTGTTCTTTCCAGCTTCTGGCT  200
      |||||||||||||||||||||||||  || ||||||||||||||||||||
seq2  GTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCT  200

seq1  ATTA  204
      ||||
seq2  ATTA  204