BAC Information

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BAC

Clone NameB6Ng01-120A19
Chromosome6 (Build37)
Map Location 29,056,645 - 29,227,968
singlet/doubletdoublet
Overlap geneRbm28, D330027H18Rik, Impdh1, 2310016C08Rik
Upstream geneGrm8, 6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350, Snd1, Lrrc4, LOC100041367, Lep
Downstream geneAI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120A19.bB6Ng01-120A19.g
ACCDH924098DH924099
length1,0791,084
definitionDH924098|Mus musculus domesticus DNA, BAC clone: B6Ng01-120A19, 5' end.DH924099|Mus musculus domesticus DNA, BAC clone: B6Ng01-120A19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,226,887 - 29,227,968)(29,056,645 - 29,057,744)
sequence
gaattcaaaggaagtgcagactatagcaagaccctctcacaaccaacatt
ggcttacacagaaggcaggtgtgtgccactgtttgctttccagttatact
ttttcttatacacttatttatttacatttattttgggggagacacatttg
tgaaggtcagggaacaacttgcaagagatggtgttcatcttcaatgctgt
gggtcctcgaatcaaactgaggccattaggcttggcagcaagaggtttta
tccactgagccatcttgccagttctccaattacgttaagtttttcatcta
catttactctgtgtgtatcctggtggtggtgtgtgtgaagggttggggat
gccagtatgtcacagtgcacctgtagacttcaaggacaagcctatgggaa
tattctctctttccaccatgtaggttttggagatcaaactgaggtcatct
gacttgttgatcagtgccttagcggctaagtctaatcccccaaatacatg
actgacagtactacgctaatgaaatcaaccttctgtaacctcagcaaagt
caaggctagtttgccagtcctcagaagcaaggtgtgacaacataacttta
accccaataactgaatcacaaatttgaggccagcctaggctgcatagcaa
gacccaataaataaataatttcttatccccaaaggggctaataatgaacc
atgtatctagaatgtggaggttggcaatatactgactaccacccagcaat
agtcaaaaccaatccctaagccagagctatcagtcagctgcattaagaac
gccaaggaagcagagctgttgagcagagggcgcgacgctgtgttccattt
ctttttgtttggcaaaagtatatcaaattcataaacacagagatgagagc
gaaacctaaaggcagagtgaatactttcatagcaggcaggatcagagagt
ggattgtggaaaggaagcctctttgcccattgtaatgaccacacctttaa
tcccagcatttaagcagatgggactcttgagtcagtcttgggtaccttgt
cagctactcatatcagtttaagggctatg
gaattctatgcatgggcttcacagccagttcatatgccctaaccataatg
ctgggactgcaccaagaaaagactttctaggtagggatggaggcacattg
ggaaacacttgggaaactgagacaggaagatcacaagacaagttcaaaga
cagcatagactacatagtgagactctgtgtcaaaaaaaaaaaaaaaagct
ggtgatatatcttaattgtatagcgctttcctatcatttaagagttgtga
agagaccctttctaacatgtgacttttgatttttcatgattctgtagata
aagaaacaggcagggttctggtctatagaaccttaccaagggctcagttg
ctcagttgcatccaggccaggctaaaaggctcgcttcccatacctactac
cttgttactttcccatatggtctgctccacatgactatctcaggctccca
caacatggttttaagatagccaaaccgatttgttagactggcctccaaga
acgtgcaccaaagagtcaaagactccacctgctaagatccatcctcggga
attataccaagtcatttctgccatattctgtcggttaaaagagaatgatc
tcatagtcaacaagaggaaggccaggcgtggtggtacatgccttcaatcc
tagcacctaggaggaagaggcaagtggatctctgtgagttcaagaccagt
ctggtctacatagtgagctctgagacagctaaagatacagtcttccaaga
aatagtaaaagaaaaagaaaaagaaaaaggaaaaggaagaaagaaaagag
ggaagagagagaagaaaagagagagaggctcaatctttgactaaaagtaa
ggggtaaaaaatctttggccatattaatccaagtgtagtgcaatgatgct
ccctgtatctcaggatggaggcatcactccgcttcgcttctgaaggaggg
tcggtacttacagctggatttttgcttagtaatagtccctcttaaggagg
acatttcctgaaaagagaagagcttagctcttttatgtcactctggccat
ttataataactctaaaggcccaccagtctggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_29226887_29227968
seq2: B6Ng01-120A19.b_42_1120 (reverse)

seq1  CATAGCCCTAGAACTGATAATGAGTAGCTGACAAGTGACCC-AGACTGAC  49
      |||||||||  ||||||| ||||||||||||||||  |||| ||||||||
seq2  CATAGCCCTTAAACTGAT-ATGAGTAGCTGACAAGGTACCCAAGACTGAC  49

seq1  CTCAGAGTCCCATCTGCCTCAAATGCTGGGATTAAAGGTGTGGGTCATTA  99
         ||||||||||||| || ||||||||||||||||||||| ||||||||
seq2  TCAAGAGTCCCATCTG-CTTAAATGCTGGGATTAAAGGTGT-GGTCATTA  97

seq1  CAATGGGCAAAGAGGCTTCCTTCCCACAATCCACCTCTCTGATCCCTGCC  149
      |||||||||||||||||||||| |||||||||| ||||||||| |||| |
seq2  CAATGGGCAAAGAGGCTTCCTTTCCACAATCCA-CTCTCTGAT-CCTG-C  144

seq1  CTGCTATGAAAGTATTCACTCTGCC-TTAGGTTTCGCTCTCATCTCTGTG  198
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTGCTATGAAAGTATTCACTCTGCCTTTAGGTTTCGCTCTCATCTCTGTG  194

seq1  TTTATGAATTTGATATACTTTTGCCAAACAAAAAG-AATGGAACACAGCG  247
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTATGAATTTGATATACTTTTGCCAAACAAAAAGAAATGGAACACAGCG  244

seq1  TCGCGCCCTCTGCTCAACAGCTCTGCTTCCTTGGCGTTCTTAATGCAGCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCGCCCTCTGCTCAACAGCTCTGCTTCCTTGGCGTTCTTAATGCAGCT  294

seq1  GACTGATAGCTCTGGCTTAGGGATTGGTTTTGACTATTGCTGGGTGGTAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATAGCTCTGGCTTAGGGATTGGTTTTGACTATTGCTGGGTGGTAG  344

seq1  TCAGTATATTGCCAACCTCCACATTCTAGATACATGGTTCATTATTAGCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATATTGCCAACCTCCACATTCTAGATACATGGTTCATTATTAGCC  394

seq1  CCTTTGGGGATAAGAAATTATTTATTTATTGGGTCTTGCTATGCAGCCTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGGGATAAGAAATTATTTATTTATTGGGTCTTGCTATGCAGCCTA  444

seq1  GGCTGGCCTCAAATTTGTGATTCAGTTATTGGGGTTAAAGTTATGTTGTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCCTCAAATTTGTGATTCAGTTATTGGGGTTAAAGTTATGTTGTC  494

seq1  ACACCTTGCTTCTGAGGACTGGCAAACTAGCCTTGACTTTGCTGAGGTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTGCTTCTGAGGACTGGCAAACTAGCCTTGACTTTGCTGAGGTTA  544

seq1  CAGAAGGTTGATTTCATTAGCGTAGTACTGTCAGTCATGTATTTGGGGGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGTTGATTTCATTAGCGTAGTACTGTCAGTCATGTATTTGGGGGA  594

seq1  TTAGACTTAGCCGCTAAGGCACTGATCAACAAGTCAGATGACCTCAGTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTTAGCCGCTAAGGCACTGATCAACAAGTCAGATGACCTCAGTTT  644

seq1  GATCTCCAAAACCTACATGGTGGAAAGAGAGAATATTCCCATAGGCTTGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCCAAAACCTACATGGTGGAAAGAGAGAATATTCCCATAGGCTTGT  694

seq1  CCTTGAAGTCTACAGGTGCACTGTGACATACTGGCATCCCCAACCCTTCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAGTCTACAGGTGCACTGTGACATACTGGCATCCCCAACCCTTCA  744

seq1  CACACACCACCACCAGGATACACACAGAGTAAATGTAGATGAAAAACTTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACCACCACCAGGATACACACAGAGTAAATGTAGATGAAAAACTTA  794

seq1  ACGTAATTGGAGAACTGGCAAGATGGCTCAGTGGATAAAACCTCTTGCTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAATTGGAGAACTGGCAAGATGGCTCAGTGGATAAAACCTCTTGCTG  844

seq1  CCAAGCCTAATGGCCTCAGTTTGATTCGAGGACCCACAGCATTGAAGATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCTAATGGCCTCAGTTTGATTCGAGGACCCACAGCATTGAAGATG  894

seq1  AACACCATCTCTTGCAAGTTGTTCCCTGACCTTCACAAATGTGTCTCCCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCATCTCTTGCAAGTTGTTCCCTGACCTTCACAAATGTGTCTCCCC  944

seq1  CAAAATAAATGTAAATAAATAAGTGTATAAGAAAAAGTATAACTGGAAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAATGTAAATAAATAAGTGTATAAGAAAAAGTATAACTGGAAAG  994

seq1  CAAACAGTGGCACACACCTGCCTTCTGTGTAAGCCAATGTTGGTTGTGAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGTGGCACACACCTGCCTTCTGTGTAAGCCAATGTTGGTTGTGAG  1044

seq1  AGGGTCTTGCTATAGTCTGCACTTCCTTTGAATTC  1082
      |||||||||||||||||||||||||||||||||||
seq2  AGGGTCTTGCTATAGTCTGCACTTCCTTTGAATTC  1079

seq1: chr6_29056645_29057744
seq2: B6Ng01-120A19.g_68_1151

seq1  GAATTCTATGCATGGGCTTCACAGCCAGTTCATATGCCCTAACCATAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGCATGGGCTTCACAGCCAGTTCATATGCCCTAACCATAATG  50

seq1  CTGGGACTGCACCAAGAAAAGACTTTCTAGGTAGGGATGGAGGCACATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACTGCACCAAGAAAAGACTTTCTAGGTAGGGATGGAGGCACATTG  100

seq1  GGAAACACTTGGGAAACTGAGACAGGAAGATCACAAGACAAGTTCAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACACTTGGGAAACTGAGACAGGAAGATCACAAGACAAGTTCAAAGA  150

seq1  CAGCATAGACTACATAGTGAGACTCTGTGTCAAAAAAAAAAAAAAAAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATAGACTACATAGTGAGACTCTGTGTCAAAAAAAAAAAAAAAAGCT  200

seq1  GGTGATATATCTTAATTGTATAGCGCTTTCCTATCATTTAAGAGTTGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATATATCTTAATTGTATAGCGCTTTCCTATCATTTAAGAGTTGTGA  250

seq1  AGAGACCCTTTCTAACATGTGACTTTTGATTTTTCATGATTCTGTAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCCTTTCTAACATGTGACTTTTGATTTTTCATGATTCTGTAGATA  300

seq1  AAGAAACAGGCAGGGTTCTGGTCTATAGAACCTTACCAAGGGCTCAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACAGGCAGGGTTCTGGTCTATAGAACCTTACCAAGGGCTCAGTTG  350

seq1  CTCAGTTGCATCCAGGCCAGGCTAAAAGGCTCGCTTCCCATACCTACTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTGCATCCAGGCCAGGCTAAAAGGCTCGCTTCCCATACCTACTAC  400

seq1  CTTGTTACTTTCCCATATGGTCTGCTCCACATGACTATCTCAGGCTCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTACTTTCCCATATGGTCTGCTCCACATGACTATCTCAGGCTCCCA  450

seq1  CAACATGGTTTTAAGATAGCCAAACCGATTTGTTAGACTGGCCTCCAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGGTTTTAAGATAGCCAAACCGATTTGTTAGACTGGCCTCCAAGA  500

seq1  ACGTGCACCAAAGAGTCAAAGACTCCACCTGCTAAGATCCATCCTCGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGCACCAAAGAGTCAAAGACTCCACCTGCTAAGATCCATCCTCGGGA  550

seq1  ATTATACCAAGTCATTTCTGCCATATTCTGTCGGTTAAAAGAGAATGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACCAAGTCATTTCTGCCATATTCTGTCGGTTAAAAGAGAATGATC  600

seq1  TCATAGTCAACAAGAGGAAGGCCAGGCGTGGTGGTACATGCCTTCAATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTCAACAAGAGGAAGGCCAGGCGTGGTGGTACATGCCTTCAATCC  650

seq1  TAGCACCTAGGAGGAAGAGGCAAGTGGATCTCTGTGAGTTCAAGACCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACCTAGGAGGAAGAGGCAAGTGGATCTCTGTGAGTTCAAGACCAGT  700

seq1  CTGGTCTACATAGTGAGCTCTGAGACAGCTAAAGATACAGTCTTCCAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTACATAGTGAGCTCTGAGACAGCTAAAGATACAGTCTTCCAAGA  750

seq1  AATAGTAAAAGAAAAAGAAAAAGAAAAAAGGAAAAGGAAGAAAGAAAAGA  800
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AATAGTAAAAGAAAAAGAAAAAG-AAAAAGGAAAAGGAAGAAAGAAAAGA  799

seq1  GGGAAGAGAGAGAAGAAAAAGAGAGAGAGGCTCAATCTTTGACTAAAAGT  850
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGGAAGAGAGAGAAG-AAAAGAGAGAGAGGCTCAATCTTTGACTAAAAGT  848

seq1  AAGGGGTAAAAAAATCTTTGGCCATATTTAATCCAAGGTGTAGGTGCAAT  900
      ||||||| |||||||||||||||||| ||||||||| ||||| |||||||
seq2  AAGGGGT-AAAAAATCTTTGGCCATA-TTAATCCAA-GTGTA-GTGCAAT  894

seq1  GAATGCTCCCTGTATTCTCAGGATGGAGGCATTCACTCCGCTTCGCTTCT  950
      | |||||||||||| |||||||||||||||| ||||||||||||||||||
seq2  G-ATGCTCCCTGTA-TCTCAGGATGGAGGCA-TCACTCCGCTTCGCTTCT  941

seq1  GAGGGAGGGTCGGTACTTACAGCTGGATCTTTGCTTAGTAATAGTTCCCC  1000
      || ||||||||||||||||||||||||| ||||||||||||||||  |||
seq2  GAAGGAGGGTCGGTACTTACAGCTGGATTTTTGCTTAGTAATAGT--CCC  989

seq1  TCTTAAGGGAGGACATTTCCTG-AGAGAGAAGAGCTTAGCTCCTTTATGT  1049
      |||||| ||||||||||||||| | ||||||||||||||||| |||||||
seq2  TCTTAA-GGAGGACATTTCCTGAAAAGAGAAGAGCTTAGCTCTTTTATGT  1038

seq1  CAACTCCTGGCCATTTATAATAACTCTAAAGGGCCACACCAGTTCTGGAG  1099
      | ||| ||||||||||||||||||||||||||  | |||||| |||||||
seq2  C-ACT-CTGGCCATTTATAATAACTCTAAAGG--CCCACCAG-TCTGGAG  1083

seq1  T  1100
      |
seq2  T  1084