BAC Information

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BAC

Clone NameB6Ng01-121B14
Chromosome6 (Build37)
Map Location 90,441,984 - 90,443,038
singlet/doubletsinglet
Overlap genenone
Upstream geneChchd6, Txnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2, V1rb1, V1ra1, LOC625050, V1ra7, V1ra8, V1rb3, LOC100043191, V1r-ps5, V1ra9, BC048671, Chst13, Uroc1, Zxdc, Ccdc37, Klf15
Downstream geneAldh1l1, Slc41a3, Iqsec1, LOC100043646, EG665685, Nup210, Hdac11, Fbln2, LOC665716, Wnt7a, LOC100043659, LOC625420, Chchd4, Tmem43, Xpc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121B14.b
ACCDH924869
length1,101
definitionDH924869|Mus musculus domesticus DNA, BAC clone: B6Ng01-121B14, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctctaacccaattgggattgcgtgatgttgggaagagagtgaaa
gaattggctgtgactgcacggttgagacatcctgtccctgactgtccctt
agttctggctttccaggtgactctggtcaggctcactctcccccttctgt
gccccctggaaggttagagaggtgaccatgcctcagtgacagaccagtta
gaccaccaggtagtctgcaagtgccatccaggtcccctcacagcagcctc
aatacctgggtgtgggggatctataagctgacaacttctgctgccatagc
ctatgaaatagtgatatagatttgttctgaccacgtggctgcctgggccc
cactctgcccaagaccagattagacttccactcaggctctgttgtcaggt
ccctctggtccccagttggtcatggcctcagccctcccttgcctgcctga
ctacccttctctgcaggctgtccctctgtgccgatctcctgataatttct
cagattaacatcgtgcactttcagcaggtctgaggcaatgtccttctcac
cgtatcaaatcaacaggtacatgtcaccaagccttgaacccagtgacatc
atccatgatctctcagtgaaggtgggaccaggccaagagttgccattata
aacgtacttcatgattaccaaacatttaggggtgacactctgggacctga
aagagactctcctgcttatgcttgttagcccttctgtccactcttggcct
gcagctacgaatctgaagtctcctgttagacagctcatcttcaccccttc
catatttattaatgggaactgctcagtgtggaagagttaaatatcaataa
ttagccacacaccggccggccagcagagcacagaggaagagcaaaagctg
cttagtcactgttaactggcacctctctctgcccgtgacctgacccctgg
ttgcctttgccctcgctggctctgccccatctctgctgctgaagtcagca
tcctgtctaggccttgcaggaccgtcaaccacgcttcctctagaagcaag
atcgagccctttttcttccactgagcctgctctgctctttgtctagcctg
a
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_90441984_90443038
seq2: B6Ng01-121B14.b_91_1145 (reverse)

seq1  TCAGGCAAGACAAAGAGCAGAG-AGGCTCAGAGG-AGAGAAAGGGCTGGA  48
      |||||| ||||||||||||||| |||||||| || ||| |||||||| ||
seq2  TCAGGCTAGACAAAGAGCAGAGCAGGCTCAGTGGAAGAAAAAGGGCTCGA  50

seq1  TCTTGCTTCTAGA-GAAGCTGTGCTGAAGGTCCTGCAAGGCCTAGGACAG  97
      ||||||||||||| |||||   | ||| |||||||||||||||| |||||
seq2  TCTTGCTTCTAGAGGAAGCGTGGTTGACGGTCCTGCAAGGCCTA-GACAG  99

seq1  GATGCTGACTTCAGCAGCAGAGATGGGGCAGAGCCAGCGAGGGCAAAGGC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGACTTCAGCAGCAGAGATGGGGCAGAGCCAGCGAGGGCAAAGGC  149

seq1  AACCAGGGGTCAGGTCACGGGCAGAGAGAGGTGCCAGTTAAACAGTGACT  197
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AACCAGGGGTCAGGTCACGGGCAGAGAGAGGTGCCAGTT-AACAGTGACT  198

seq1  AAGCAGCCTTTGCTCTTCCTCTGTGCTCTGCTGGCCGGCCGGTGTGTGGC  247
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCTTTTGCTCTTCCTCTGTGCTCTGCTGGCCGGCCGGTGTGTGGC  248

seq1  TTAATTATTGATATTTAACTCTTCCACACTGAGCAGTTCCCATTAATAAA  297
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TAATTATTGATATTTAACTCTTCCACACTGAGCAGTTCCCATTAATAAA  297

seq1  TATGGAAGGGGTGAAGATGAGCTGTCTAACAGGAGACTTCAGATTCGTAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAGGGGTGAAGATGAGCTGTCTAACAGGAGACTTCAGATTCGTAG  347

seq1  CTGCAGGCCAAGAGTGGACAGAAGGGCTAACAAGCATAAGCAGGAGAGTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGCCAAGAGTGGACAGAAGGGCTAACAAGCATAAGCAGGAGAGTC  397

seq1  TCTTTCAGGTCCCAGAGTGTCACCCCTAAATGTTTGGTAATCATGAAGTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAGGTCCCAGAGTGTCACCCCTAAATGTTTGGTAATCATGAAGTA  447

seq1  CGTTTATAATGGCAACTCTTGGCCTGGTCCCACCTTCACTGAGAGATCAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTATAATGGCAACTCTTGGCCTGGTCCCACCTTCACTGAGAGATCAT  497

seq1  GGATGATGTCACTGGGTTCAAGGCTTGGTGACATGTACCTGTTGATTTGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATGTCACTGGGTTCAAGGCTTGGTGACATGTACCTGTTGATTTGA  547

seq1  TACGGTGAGAAGGACATTGCCTCAGACCTGCTGAAAGTGCACGATGTTAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGTGAGAAGGACATTGCCTCAGACCTGCTGAAAGTGCACGATGTTAA  597

seq1  TCTGAGAAATTATCAGGAGATCGGCACAGAGGGACAGCCTGCAGAGAAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAAATTATCAGGAGATCGGCACAGAGGGACAGCCTGCAGAGAAGG  647

seq1  GTAGTCAGGCAGGCAAGGGAGGGCTGAGGCCATGACCAACTGGGGACCAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCAGGCAGGCAAGGGAGGGCTGAGGCCATGACCAACTGGGGACCAG  697

seq1  AGGGACCTGACAACAGAGCCTGAGTGGAAGTCTAATCTGGTCTTGGGCAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACCTGACAACAGAGCCTGAGTGGAAGTCTAATCTGGTCTTGGGCAG  747

seq1  AGTGGGGCCCAGGCAGCCACGTGGTCAGAACAAATCTATATCACTATTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGCCCAGGCAGCCACGTGGTCAGAACAAATCTATATCACTATTTC  797

seq1  ATAGGCTATGGCAGCAGAAGTTGTCAGCTTATAGATCCCCCACACCCAGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTATGGCAGCAGAAGTTGTCAGCTTATAGATCCCCCACACCCAGG  847

seq1  TATTGAGGCTGCTGTGAGGGGACCTGGATGGCACTTGCAGACTACCTGGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGGCTGCTGTGAGGGGACCTGGATGGCACTTGCAGACTACCTGGT  897

seq1  GGTCTAACTGGTCTGTCACTGAGGCATGGTCACCTCTCTAACCTTCCAGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAACTGGTCTGTCACTGAGGCATGGTCACCTCTCTAACCTTCCAGG  947

seq1  GGGCACAGAAGGGGGAGAGTGAGCCTGACCAGAGTCACCTGGAAAGCCAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACAGAAGGGGGAGAGTGAGCCTGACCAGAGTCACCTGGAAAGCCAG  997

seq1  AACTAAGGGACAGTCAGGGACAGGATGTCTCAACCGTGCAGTCACAGCCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGGGACAGTCAGGGACAGGATGTCTCAACCGTGCAGTCACAGCCA  1047

seq1  AGTCTTTC  1055
      | ||||||
seq2  ATTCTTTC  1055