BAC Information

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BAC

Clone NameB6Ng01-121E11
Chromosome6 (Build37)6 (Build37)
Map Location 18,835,441 - 18,835,96821,732,303 - 21,732,556
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121E11.bB6Ng01-121E11.g
ACCDH925003DH925004
length526254
definitionDH925003|Mus musculus domesticus DNA, BAC clone: B6Ng01-121E11, 5' end.DH925004|Mus musculus domesticus DNA, BAC clone: B6Ng01-121E11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,441 - 18,835,968)(21,732,303 - 21,732,556)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctaatatgttggatattagtccccta
tctgatttaggataggtaaagatcctttcccaatctgttggtggtctttt
tgtcttattgacggtgtcttttgccttgcagaaactttggagtttcatta
ggtcccatttgtcaattctcgatcttacagcacaagccattgctgttctc
ttcaggaatttttcccctgtgcccatatcttcaaggcttttccccacttt
ctcctctataagtttcagtgtctctggttttatgtgaagttccttgatcc
acttagatttgaccttagtacaaggagataagtatggatcgattcacatt
cttctacacgataacaaccagttgtgccagcaccaattgttgaaaatgct
gtctttcttccactggatggttttagctcccttgtcgaagatcaagtaac
cataggtgtgtgggttcatttctggg
caggataaccagggtttcatagagaaaccatgactcaaaaacaaaacaaa
acaaagaacctattgaaagtttataaattatgcaaatgaaatacagtgac
atttctattaccagaaaaccaaatcaccaaattctgctgatgtacaatat
actaactaaacttggcttatgccctgctgaggtactgtcctgataaattt
taaagaacaatatatatgtgtgtgtgtgtgtgtatgtatatgtatatgtg
tgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835441_18835968
seq2: B6Ng01-121E11.b_52_577 (reverse)

seq1  CCCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAG  50
      |||||| ||||||||||||||||||||| |||||||||||||||||||||
seq2  CCCAGAAATGAACCCACACACCTATGGTTACTTGATCTTCGACAAGGGAG  50

seq1  CTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGG  100

seq1  CACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATC  150
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CACAACTGGTTGTTATCGTGTAGAAGAATGTGAATCGATCCATACTTATC  150

seq1  TCCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAAC  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAAC  200

seq1  CAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGAT  250

seq1  ATGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGT  299
      ||||||| ||||||||| |||||||| |||||||||||||| ||||||||
seq2  ATGGGCACAGGGGAAAAATTCCTGAAGAGAACAGCAATGGCTTGTGCTGT  300

seq1  GAGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCA  349
       || | |||||| |||||||||||||||||||||||||||||||||||||
seq2  AAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCA  350

seq1  AGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAA  400

seq1  AGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATAT-  449

seq1  TAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATA  499
         ||||||||||||||||||||||||||||||||||||||||||||| |
seq2  --TAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAA  497

seq1  AATGGGGCTCAGAACTGAACAAAGAATTC  528
      |||||||||||||||||||||||||||||
seq2  AATGGGGCTCAGAACTGAACAAAGAATTC  526

seq1: chr6_21732303_21732556
seq2: B6Ng01-121E11.g_73_326

seq1  CAGGATAACCAGGGTTTCATAGAGAAACCATGACTCAAAAACAAAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATAACCAGGGTTTCATAGAGAAACCATGACTCAAAAACAAAACAAA  50

seq1  ACAAAGAACCTATTGAAAGTTTATAAATTATGCAAATGAAATACAGTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAACCTATTGAAAGTTTATAAATTATGCAAATGAAATACAGTGAC  100

seq1  ATTTCTATTACCAGAAAACCAAATCACCAAATTCTGCTGATGTACAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTATTACCAGAAAACCAAATCACCAAATTCTGCTGATGTACAATAT  150

seq1  ACTAACTAAACTTGGCTTATGCCCTGCTGAGGTACTGTCCTGATAAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACTAAACTTGGCTTATGCCCTGCTGAGGTACTGTCCTGATAAATTT  200

seq1  TAAAGAACAATATATATGTGTGTGTGTGTGTGTATGTATATGTATATGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAACAATATATATGTGTGTGTGTGTGTGTATGTATATGTATATGTG  250

seq1  TGTG  254
      ||||
seq2  TGTG  254