BAC Information

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BAC

Clone NameB6Ng01-121I16
Chromosome6 (Build37)
Map Location 69,114,152 - 69,115,302
singlet/doubletsinglet
Overlap geneIgk
Upstream geneIgkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75
Downstream geneIgkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420, Igkv4-51, Gm1069, Igkv12-49, Igkv5-48, ENSMUSG00000029975, Igkv12-46, Igkv5-45, Igkv12-44, Igkv5-43, Igkv12-42, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409, Igkv12-38, Gm1410, Igkv18-36, Igkv1-35, Igkv8-34, U29423, ENSMUSG00000053690, Igkv8-31, Igkv8-30, LOC545852, Igkv6-29, Igkv8-28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121I16.bB6Ng01-121I16.g
ACCDH925198DH925199
length7611,116
definitionDH925198|Mus musculus domesticus DNA, BAC clone: B6Ng01-121I16, 5' end.DH925199|Mus musculus domesticus DNA, BAC clone: B6Ng01-121I16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatggaattagtagataaatgggtggatctggtgaacatcatctg
gagtgaggtaacccaatcacaaaagaacacacatgatatgcactcacagt
taagtagatattagcccagaagctcagagtacacaagatacaaatttgca
aaacatgaaactcaagaataaggaagacaaaatgtggatacatcaatcat
tcttagaagagggaacaaaatacacatgaaaagagttacagagacaatgt
ttgagcagagactgaaggaatgaccatccagagtttgccccacctgagta
tccatcccataaacaaccaccaaaaccagacactattgtggattccaaca
agagcttgctgactggagactgatatagctgtctcctgagaggttctgcc
atgcctgacaaatatagaagtagatgctcacagccatccattggacagat
acagagtccccaaggaaggagttagaggaagtacccagggagatgaagga
gtttgcagcctcataggaggaacaacaatatgaaataaccagttccccac
cagagctccctgggactaaaccacctatcaaaggaaacacatggtagaac
tcatgggtctaactgtatatagcaaaggatggcttagttggtcatcagtg
tgaggagaggcccttggtcctgtgaagtttctatgccccagtgtagggaa
attctagggccaggaacctggagtgggttggttggtaagcaggagtgggg
ggttggtggga
gaattcactcattggtttggtggcactttggtagcactcagtagagttac
agttgtactgtgatagaatatatgaaatgggggatgcacaaacacacagg
ccatggatgtccagctcctggtagacttcatctgagagtggcttaatgtc
tacaccagggagaacagagctagaccacattaaccaaggtcttgtcttat
tacaagttaactaaattcacttgctgggatgtagcaattagatctcttat
aaagaaacctgtaattcatttagttacaccctcatatcaatctctatttt
ggggaaaatataacatggtatacctattatatgcatattctgtataaatc
taagcaattttcatagattaaaaatctttacgtggaagacaatagaacag
caaaggctgatatttagctatttaatgcttaagacttttttttctttttt
gcagaaattcactagagcttctggggtcttactctcagagtttgtgtaat
tcttcattttaataaagttatcaagggagttttatacagatcagcgtgga
taaaaacattcatctatttgctgtaatacgtgtggcacttattatccata
taagtgtattcatgcttattaccaaaatgaaatatcatttttcaattaat
gaccaagtagtgtcttgtcttagaatatctctgcctttaaagatacatag
aagtcccaacccagtatgaacataggcagcttgttgttatatacttaggt
ataatgatgtgtagtggaaagccttgtacttaagtgaagttcacagctgt
atgcattagtgcctctagtacagtgtgggaaagaattggtgttggtctag
gagaagagtccccattctagatccaggaaattatgggacatacttagaac
tgctctcatcttttcagatatgcaaagtatagaaaaataatacaattgta
gtatttccaaactgggtcatatttagagtaaatgatgtaatatgctctct
acatattgtaagaattttgtcagaaaacatagttatttaaatccacttct
gtgctaaaatgaatagatcttagttcatagtcactctgcaatcacctgat
gctctctactgattac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_69114152_69115302
seq2: B6Ng01-121I16.g_67_1182

seq1  GAATTCACTCATTGGTTTGGTGGCACTTTGGTAGCACTCAGTAGAGTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCATTGGTTTGGTGGCACTTTGGTAGCACTCAGTAGAGTTAC  50

seq1  AGTTGTACTGTGATAGAATATATGAAATGGGGGATGCACAAACACACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTACTGTGATAGAATATATGAAATGGGGGATGCACAAACACACAGG  100

seq1  CCATGGATGTCCAGCTCCTGGTAGACTTCATCTGAGAGTGGCTTAATGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGATGTCCAGCTCCTGGTAGACTTCATCTGAGAGTGGCTTAATGTC  150

seq1  TACACCAGGGAGAACAGAGCTAGACCACATTAACCAAGGTCTTGTCTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCAGGGAGAACAGAGCTAGACCACATTAACCAAGGTCTTGTCTTAT  200

seq1  TACAAGTTAACTAAATTCACTTGCTGGGATGTAGCAATTAGATCTCTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTTAACTAAATTCACTTGCTGGGATGTAGCAATTAGATCTCTTAT  250

seq1  AAAGAAACCTGTAATTCATTTAGTTACACCCTCATATCAATCTCTATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACCTGTAATTCATTTAGTTACACCCTCATATCAATCTCTATTTT  300

seq1  GGGGAAAATATAACATGGTATACCTATTATATGCATATTCTGTATAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAATATAACATGGTATACCTATTATATGCATATTCTGTATAAATC  350

seq1  TAAGCAATTTTCATAGATTAAAAATCTTTACGTGGAAGACAATAGAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAATTTTCATAGATTAAAAATCTTTACGTGGAAGACAATAGAACAG  400

seq1  CAAAGGCTGATATTTAGCTATTTAATGCTTAAGACTTTTTTTTCTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCTGATATTTAGCTATTTAATGCTTAAGACTTTTTTTTCTTTTTT  450

seq1  GCAGAAATTCACTAGAGCTTCTGGGGTCTTACTCTCAGAGTTTGTGTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAATTCACTAGAGCTTCTGGGGTCTTACTCTCAGAGTTTGTGTAAT  500

seq1  TCTTCATTTTAATAAAGTTATCAAGGGAGTTTTATACAGATCAGCGTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATTTTAATAAAGTTATCAAGGGAGTTTTATACAGATCAGCGTGGA  550

seq1  TAAAAACATTCATCTATTTGCTGTAATACGTGTGGCACTTATTATCCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACATTCATCTATTTGCTGTAATACGTGTGGCACTTATTATCCATA  600

seq1  TAAGTGTATTCATGCTTATTACCAAAATGAAATATCATTTTTCAATTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTATTCATGCTTATTACCAAAATGAAATATCATTTTTCAATTAAT  650

seq1  GACCAAGTAGTGTCTTGTCTTAGAATATCTCTGCCTTTAAAGATACATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGTAGTGTCTTGTCTTAGAATATCTCTGCCTTTAAAGATACATAG  700

seq1  AAGTCCCAACCCAGTATGAACATAGGCAGCTTGTTGTTATATACTTAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCAACCCAGTATGAACATAGGCAGCTTGTTGTTATATACTTAGGT  750

seq1  ATAATGATGTGTAGTGGAAAGCCTTGTACTTAAGTGAAGTTCACAGCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGATGTGTAGTGGAAAGCCTTGTACTTAAGTGAAGTTCACAGCTGT  800

seq1  ATGCATTAGTGCCTCTAGTACAGTGTGGGAAAAGAATTGGTGTTGGTCTA  850
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGCATTAGTGCCTCTAGTACAGTGTGGG-AAAGAATTGGTGTTGGTCTA  849

seq1  GGAGAAGAGTCCCCATTCTAGATCCAGGAAATTATGGAACATAACTTAGA  900
      ||||||||||||||||||||||||||||||||||||| |||| |||||||
seq2  GGAGAAGAGTCCCCATTCTAGATCCAGGAAATTATGGGACAT-ACTTAGA  898

seq1  ACTGCTCCTCATCTTTTCCAGATATGCAAAGTATAGAAAAATAATACAAA  950
      |||||| |||||||||| ||||||||||||||||||||||||||||||| 
seq2  ACTGCT-CTCATCTTTT-CAGATATGCAAAGTATAGAAAAATAATACAA-  945

seq1  ATTGGTAGTATTTTCCAAACTGGGTCATATATTAGGAGTAAAATGATGTT  1000
        | |||||| ||||||||||||||||||| ||| |||| |||||||| |
seq2  --TTGTAGTA-TTTCCAAACTGGGTCATAT-TTA-GAGT-AAATGATG-T  988

seq1  AATAATTGCTCTCTTACATAATTTGTAAGATATTTATGGTCAAGAAAACA  1050
      ||||  ||||||| ||||||  ||||||||  |||   ||| ||||||||
seq2  AATA--TGCTCTC-TACATA--TTGTAAGAATTTT---GTC-AGAAAACA  1029

seq1  TTAGTTATTTTAAATCCAACTTCTGTTGTCTAAAATATGATAGAAATCTT  1100
       |||||| ||||||||| ||||||||   |||||  |||| | | |||||
seq2  -TAGTTA-TTTAAATCC-ACTTCTGT--GCTAAA--ATGA-ATAGATCTT  1071

seq1  AGTTCATAAGTCACTCTGCAATTCAACCATGATGCTCT-TACTGTATATT  1149
      ||||||| ||||||||||||| |||  | ||||||||| |||||   |||
seq2  AGTTCAT-AGTCACTCTGCAA-TCA--CCTGATGCTCTCTACTG---ATT  1114

seq1  AC  1151
      ||
seq2  AC  1116