BAC Information

Click to search

BAC

Clone NameB6Ng01-121M06
Chromosome6 (Build37)
Map Location 106,055,303 - 106,152,344
singlet/doubletdoublet
Overlap geneCntn4
Upstream geneLOC100043716, LOC100043350
Downstream geneIl5ra, Trnt1, Crbn, Ppia-ps6_1128.1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121M06.bB6Ng01-121M06.g
ACCDH925367DH925368
length5891,093
definitionDH925367|Mus musculus domesticus DNA, BAC clone: B6Ng01-121M06, 5' end.DH925368|Mus musculus domesticus DNA, BAC clone: B6Ng01-121M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,055,303 - 106,055,891)(106,151,236 - 106,152,344)
sequence
gaattcctaaaatctttcattccctcatcattcttaaaaagaacttaact
tactattaaatcttcctttggactgtttcttttatagaaaacatttattt
atttatttatttatttatttatttatttatttattttaaactccagattt
tattcccctcctggtccaccctccaactcttccacatcccatacctcctc
ctcactcccctgtctccatgaggatgtccccaccctctacccctacccta
ccagatctctaaactccctggagcctccagtctcttaagggttaggtcca
tcttttctgactaaacccagacctagcagtcctctgctgtatatgtgttg
tagacctcatatcagatggtgtatgctccctagttggtgttccaatacct
aagaactctctggggtccaggttaattgagactgctggtcctcctacagg
gttaccctcctccttagcttcttcctgttttcccctaattcaaccacagg
ggtcaagtgacaaatacccaagatacagcccatggaactcaaaaagttca
tcaagctcaaggacctaaatgaggatgcctcagtcccac
gaattcagtggatgacaaggaggaaggtttataggagcaaaagggtacaa
aaacactacaagaaaagccacagaatcaactaaccttggcaaataggggc
tcagagagactgaactgccaatcagggagcctgtatgggtgcgacctagg
ccctctggatatatgttgtggtcatgtagcttggtcttcttgttagaccc
ctaatagtgggagcaagggctatttctgactcttttgcctgcttttggca
ctcctttcctcttactgggttgcctcagccagcttttatatgagtggagg
gacgagtcttactgcaaatggatatgttatatttgatggatatccattgg
aggcctgctgtttcctggtgacaaatggaggagtacatgtggcaagaaag
gtaggggaagaaggactaggatgagagatagattagaaactgtggtcaga
atgtaatgcatgaaagaagaataaataaaaaagttatacatacatgggat
catgagggcatattttcaaacattatgttttattttttggaaactctaga
acaaaatcctaaatattacaacctaccaaaataaaatcaagaagacatga
aaagtagattaaacagaaccttagcaatcatgacaaccagtgctatgtgg
gggagggggaatcatgttcactgttggagggagtgttaacttccactgca
ggaatcagtaagatggtttctcaagaggctgacacttttgactgcagatt
cctgagggaattctcaatcaaaattacctgttaagctgctcacaatttct
gtcctaaaaatgtgtgtacacaactaaaaattttgtattactatattata
gaggaaaatacaactgatctattgggaatgatagctacattcttgtaagg
gtccatgattctgatattttatacagatttatacattccagattttaata
tagcagctaatggccaaacacacagacagtcagtggattagcagctttgt
gaacaaaaagacagtgagcgacatttagatctggcaagtaaaccaatatt
ggggtgcttggagccaattggctccaaaaattggaagattgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_106055303_106055891
seq2: B6Ng01-121M06.b_47_635

seq1  GAATTCCTAAAATCTTTCATTCCCTCATCATTCTTAAAAAGAACTTAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAAATCTTTCATTCCCTCATCATTCTTAAAAAGAACTTAACT  50

seq1  TACTATTAAATCTTCCTTTGGACTGTTTCTTTTATAGAAAACATTTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTAAATCTTCCTTTGGACTGTTTCTTTTATAGAAAACATTTATTT  100

seq1  ATTTATTTATTTATTTATTTATTTATTTATTTATTTTAAACTCCAGATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTTATTTATTTATTTATTTATTTATTTTAAACTCCAGATTT  150

seq1  TATTCCCCTCCTGGTCCACCCTCCAACTCTTCCACATCCCATACCTCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCCTCCTGGTCCACCCTCCAACTCTTCCACATCCCATACCTCCTC  200

seq1  CTCACTCCCCTGTCTCCATGAGGATGTCCCCACCCTCTACCCCTACCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCCCCTGTCTCCATGAGGATGTCCCCACCCTCTACCCCTACCCTA  250

seq1  CCAGATCTCTAAACTCCCTGGAGCCTCCAGTCTCTTAAGGGTTAGGTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCTCTAAACTCCCTGGAGCCTCCAGTCTCTTAAGGGTTAGGTCCA  300

seq1  TCTTTTCTGACTAAACCCAGACCTAGCAGTCCTCTGCTGTATATGTGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTGACTAAACCCAGACCTAGCAGTCCTCTGCTGTATATGTGTTG  350

seq1  TAGACCTCATATCAGATGGTGTATGCTCCCTAGTTGGTGTTCCAATACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCTCATATCAGATGGTGTATGCTCCCTAGTTGGTGTTCCAATACCT  400

seq1  AAGAACTCTCTGGGGTCCAGGTTAATTGAGACTGCTGGTCCTCCTACAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTCTCTGGGGTCCAGGTTAATTGAGACTGCTGGTCCTCCTACAGG  450

seq1  GTTACCCTCCTCCTTAGCTTCTTCCTGTTTTCCCCTAATTCAACCACAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCCTCCTCCTTAGCTTCTTCCTGTTTTCCCCTAATTCAACCACAGG  500

seq1  GGTCAAGTGACAAATACCCAAGATACAGCCCATGGAACTCAAAAAGTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGTGACAAATACCCAAGATACAGCCCATGGAACTCAAAAAGTTCA  550

seq1  TCAAGCTCAAGGACCTAAATGAGGATGCCTCAGTCCCAC  589
      |||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTCAAGGACCTAAATGAGGATGCCTCAGTCCCAC  589

seq1: chr6_106151236_106152344
seq2: B6Ng01-121M06.g_70_1162 (reverse)

seq1  CACAATTCTCCAAATTTTTTGGAGCCCAATTGGCTCTCAAGCACACAATT  50
      ||||||  |||||  ||||||||| ||||||||||| ||||||| | |  
seq2  CACAATCTTCCAA--TTTTTGGAG-CCAATTGGCTC-CAAGCACCCCA-A  45

seq1  TATGTGTTTCCTTGCCAGATACTTTAATGTCGCTTCAACTGTCTTTTTGT  100
      |||  |||| ||||||||||   | |||||||||   |||||||||||||
seq2  TATTGGTTTACTTGCCAGAT--CTAAATGTCGCT--CACTGTCTTTTTGT  91

seq1  TCACAAAGCTGCTAATCCACTGACTGGTCTGTGTGTTTGGCCATTAGCTG  150
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCACAAAGCTGCTAATCCACTGACT-GTCTGTGTGTTTGGCCATTAGCTG  140

seq1  CTATTATAAAAATTCTGGAATTGTATAAAATCTGTATAAAATATCAGAAT  200
      ||||  |||||  ||||||| ||||| |||||||||||||||||||||||
seq2  CTATATTAAAA--TCTGGAA-TGTAT-AAATCTGTATAAAATATCAGAAT  186

seq1  CATGGAACCCTTACAAGAATGTAGCTATCATTCCCAATAGATCAGTTGTA  250
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGG-ACCCTTACAAGAATGTAGCTATCATTCCCAATAGATCAGTTGTA  235

seq1  TTTTTCCTCTATAATATAGTAATACAACATTTTTAGTTGTGTACACACAT  300
       |||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  -TTTTCCTCTATAATATAGTAATACAAAATTTTTAGTTGTGTACACACAT  284

seq1  TTTTAGGACAGAAATTGTGAGCAGCTTAACAGGTAATTTTGATTGAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGACAGAAATTGTGAGCAGCTTAACAGGTAATTTTGATTGAGAAT  334

seq1  TCCCTCAGGAATCTGCAGTCAAAAGTGTCAGCCTCTTGAGAAACCATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAGGAATCTGCAGTCAAAAGTGTCAGCCTCTTGAGAAACCATCTT  384

seq1  ACTGATTCCTGCAGTGGAAGTTAACACTCCCTCCAACAGTGAACATGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTCCTGCAGTGGAAGTTAACACTCCCTCCAACAGTGAACATGATT  434

seq1  CCCCCTCCCCCACATAGCACTGGTTGTCATGATTGCTAAGGTTCTGTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCCCCCACATAGCACTGGTTGTCATGATTGCTAAGGTTCTGTTTA  484

seq1  ATCTACTTTTCATGTCTTCTTGATTTTATTTTGGTAGGTTGTAATATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTTTTCATGTCTTCTTGATTTTATTTTGGTAGGTTGTAATATTTA  534

seq1  GGATTTTGTTCTAGAGTTTCCAAAAAATAAAACATAATGTTTGAAAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTGTTCTAGAGTTTCCAAAAAATAAAACATAATGTTTGAAAATAT  584

seq1  GCCCTCATGATCCCATGTATGTATAACTTTTTTATTTATTCTTCTTTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCATGATCCCATGTATGTATAACTTTTTTATTTATTCTTCTTTCAT  634

seq1  GCATTACATTCTGACCACAGTTTCTAATCTATCTCTCATCCTAGTCCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTACATTCTGACCACAGTTTCTAATCTATCTCTCATCCTAGTCCTTC  684

seq1  TTCCCCTACCTTTCTTGCCACATGTACTCCTCCATTTGTCACCAGGAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTACCTTTCTTGCCACATGTACTCCTCCATTTGTCACCAGGAAAC  734

seq1  AGCAGGCCTCCAATGGATATCCATCAAATATAACATATCCATTTGCAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCCTCCAATGGATATCCATCAAATATAACATATCCATTTGCAGTA  784

seq1  AGACTCGTCCCTCCACTCATATAAAAGCTGGCTGAGGCAACCCAGTAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCGTCCCTCCACTCATATAAAAGCTGGCTGAGGCAACCCAGTAAGA  834

seq1  GGAAAGGAGTGCCAAAAGCAGGCAAAAGAGTCAGAAATAGCCCTTGCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGAGTGCCAAAAGCAGGCAAAAGAGTCAGAAATAGCCCTTGCTCC  884

seq1  CACTATTAGGGGTCTAACAAGAAGACCAAGCTACATGACCACAACATATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTAGGGGTCTAACAAGAAGACCAAGCTACATGACCACAACATATA  934

seq1  TCCAGAGGGCCTAGGTCGCACCCATACAGGCTCCCTGATTGGCAGTTCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGGGCCTAGGTCGCACCCATACAGGCTCCCTGATTGGCAGTTCAG  984

seq1  TCTCTCTGAGCCCCTATTTGCCAAGGTTAGTTGATTCTGTGGCTTTTCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGAGCCCCTATTTGCCAAGGTTAGTTGATTCTGTGGCTTTTCTT  1034

seq1  GTAGTGTTTTTGTACCCTTTTGCTCCTATAAACCTTCCTCCTTGTCATCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGTTTTTGTACCCTTTTGCTCCTATAAACCTTCCTCCTTGTCATCC  1084

seq1  ACTGAATTC  1109
      |||||||||
seq2  ACTGAATTC  1093