BAC Information

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BAC

Clone NameB6Ng01-121M14
Chromosome6 (Build37)4 (Build37)
Map Location 10,059,863 - 10,061,12168,832,216 - 68,832,732
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneNxph1
Downstream geneLOC330264, LOC100040285, LOC667650, AA545190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121M14.bB6Ng01-121M14.g
ACCDH925380DH925381
length1,214870
definitionDH925380|Mus musculus domesticus DNA, BAC clone: B6Ng01-121M14, 5' end.DH925381|Mus musculus domesticus DNA, BAC clone: B6Ng01-121M14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(10,059,863 - 10,061,121)(68,832,216 - 68,832,732)
sequence
gaattccccagaatatcagaaaaatatgggttagagaggattttagttat
ttctttattgtaaagtgtcaaccctgatgattttgtttttgaaaagaaaa
taatgtttatgtatattagtacagatttttgttgaaaatgttcacagaat
acaaaacaatattgtgttttcaccatgaccaaactagtgcttaagcatca
attctatcattggtctacaaatcacattactccctacagtaaacttgcag
tatcaggagaatggaaaacacagggattctaattcacaccatcctcattc
ttatataatcccagacaagagatgaatactaaagcaatattccttagagt
tgaggaactgactcctatctgctaaaacagtgaaaacagtgcattagtct
tgctccagctaaattcaattagaacccctgtgtgatgttctaactattat
agaattttgtaacctccaaattaacttctggtagattgtttcttctaaca
agtctaaataagtatattgaagtctactcattaatcccagataaacttta
ttaaatgcagtagataatcaatagaatctaaaataaggtatctaaacagg
tatattcttactaggaagacttataagaatgtactattaagtttaaagct
ctgttttcattaacatataacataaaaactaaatttacattttatgataa
tataaaattctaaatttatatacataataaattgcagaaattccaactta
attacataaactgttatctgagattttgatgataaatcttaaaaacttta
gtaaaatcctttttattaaattatcatgagttttaacaaagttatatcag
tagtaataaattttaaatgttagttaccaaatgtacataaaaattggtta
ctatgttcatcctcattagtgatgtctacagtttttccacatgtaaagta
ggagtgaatgtaattgctctgacaaatatgggagatttaatattgtagga
catgatacgatattaatgctatgttcatacacagtctcagattgtataaa
aactgtcatactattgtcactacaaatccaccatcaattctttgtcagca
tcacatgattattctgctttatcatcaatacctaacatagctaccaattg
ttgtctcggtttattccatgtgttctctagctcttagaaaagactcaatt
tgacttaaacctcg
gaattcttatgattgtgtggctggtgttgtgggtatctggcagtagtcag
ccgactgtgcgccctagctaccctggtgctgctcgtacttgaaggggctt
gtgcccctactcagacagggtttttgcttccctgactaatgcagtctcaa
gtcctgcacgattggattggagcagatgctgtgttccactcaccagaggt
cttttttttttgttgttgttgttctttttttttttctttccattttttat
taggtatttagctcatttacatttccaatgctataccaaaattccaccat
acccccccacccccactcccttacccgcccactccccctttttggccctg
acgttcccctgttctggggcatataaagtttgtgtgtccaatgggcctct
ctttctggtgatggccgactaggccatcctttgatacatatgcagctaga
gtcaagagctccggggtactggttagttcataatgttgatccacctatag
ggttgcagatccctttagctccttgggtactttctctagctcctccattg
ggagccctgtgatccatcccttagctgactgtgggcatccactttctgtg
tttgctaggccccggcatagtctcacaagagacagctacatctgggtcct
tttcgataaaatcttgctagtgtatgcaaatggtgtcagcgtttggatgc
tgattatggggtggatccctggataaggcagtctctacatggtccatcct
ttcatctcagctccaaactttgtctctgtaagtccttccaagggtgtttt
tgttcccacttctaaggaggggtatagtgtccacaccttcagtcttcatt
tttcttgagttcatgtgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_10059863_10061121
seq2: B6Ng01-121M14.b_50_1263

seq1  GAATTCCCCAGAATATCAGAAAAATATGGGTTAGAGAGGATTTTAGTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCAGAATATCAGAAAAATATGGGTTAGAGAGGATTTTAGTTAT  50

seq1  TTCTTTATTGTAAAGTGTCAACCCTGATGATTTTGTTTTTGAAAAGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATTGTAAAGTGTCAACCCTGATGATTTTGTTTTTGAAAAGAAAA  100

seq1  TAATGTTTATGTATATTAGTACAGATTTTTGTTGAAAATGTTCACAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTTATGTATATTAGTACAGATTTTTGTTGAAAATGTTCACAGAAT  150

seq1  ACAAAACAATATTGTGTTTTCACCATGACCAAACTAGTGCTTAAGCATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAATATTGTGTTTTCACCATGACCAAACTAGTGCTTAAGCATCA  200

seq1  ATTCTATCATTGGTCTACAAATCACATTACTCCCTACAGTAAACTTGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATCATTGGTCTACAAATCACATTACTCCCTACAGTAAACTTGCAG  250

seq1  TATCAGGAGAATGGAAAACACAGGGATTCTAATTCACACCATCCTCATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGGAGAATGGAAAACACAGGGATTCTAATTCACACCATCCTCATTC  300

seq1  TTATATAATCCCAGACAAGAGATGAATACTAAAGCAATATTCCTTAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAATCCCAGACAAGAGATGAATACTAAAGCAATATTCCTTAGAGT  350

seq1  TGAGGAACTGACTCCTATCTGCTAAAACAGTGAAAACAGTGCATTAGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAACTGACTCCTATCTGCTAAAACAGTGAAAACAGTGCATTAGTCT  400

seq1  TGCTCCAGCTAAATTCAATTAGAACCCCTGTGTGATGTTCTAACTATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCAGCTAAATTCAATTAGAACCCCTGTGTGATGTTCTAACTATTAT  450

seq1  AGAATTTTGTAACCTCCAAATTAACTTCTGGTAGATTGTTTCTTCTAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTTGTAACCTCCAAATTAACTTCTGGTAGATTGTTTCTTCTAACA  500

seq1  AGTCTAAATAAGTATATTGAAGTCTACTCATTAATCCCAGATAAACTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAATAAGTATATTGAAGTCTACTCATTAATCCCAGATAAACTTTA  550

seq1  TTAAATGCAGTAGATAATCAATAGAATCTAAAATAAGGTATCTAAACAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGCAGTAGATAATCAATAGAATCTAAAATAAGGTATCTAAACAGG  600

seq1  TATATTCTTACTAGGAAGACTTATAAGAATGTACTATTAAGTTTAAAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCTTACTAGGAAGACTTATAAGAATGTACTATTAAGTTTAAAGCT  650

seq1  CTGTTTTCATTAACATATAACATAAAAACTAAATTTACATTTTATGATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTCATTAACATATAACATAAAAACTAAATTTACATTTTATGATAA  700

seq1  TATAAAATTCTAAATTTATATACATAATAAATTGCAGAAATTCCAACTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATTCTAAATTTATATACATAATAAATTGCAGAAATTCCAACTTA  750

seq1  ATTACATAAACTGTTATCTGAGATTTTGATGATAAATCTTAAAAACTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATAAACTGTTATCTGAGATTTTGATGATAAATCTTAAAAACTTTA  800

seq1  GTAAAATCCTTTTTATTAAATTATCATGAGTTTTAACAAAGTTATATCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATCCTTTTTATTAAATTATCATGAGTTTTAACAAAGTTATATCAG  850

seq1  TAGTAATAAATTTTAAATGTTAGTTACCAAATGTACATAAAAATTGGTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATAAATTTTAAATGTTAGTTACCAAATGTACATAAAAATTGGTTA  900

seq1  CTATGTTCATCCTCATTAGTGATGTCTACAGTTTTTCCACATGTAAAAGT  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTATGTTCATCCTCATTAGTGATGTCTACAGTTTTTCCACATGT-AAAGT  949

seq1  AGGAGTGAATGTTAATTGCTCCTGACAAAATATGGGAGAATTTAAATATT  1000
      ||||||||||| |||||||| ||||| ||||||||||||  || ||||||
seq2  AGGAGTGAATG-TAATTGCT-CTGAC-AAATATGGGAGA--TTTAATATT  994

seq1  GTAGGAACCATGATAACGATATTAATGCTATGTTCAATAACAACAGTCTC  1050
      ||||||  |||||| |||||||||||||||||||| |||   ||||||||
seq2  GTAGGA--CATGAT-ACGATATTAATGCTATGTTC-ATA--CACAGTCTC  1038

seq1  AGATTGTATAAAAACTGTCATACTAATTGTCAACTAACAAAATTCAAACA  1100
      |||||||||||||||||||||||| |||||| ||||   |||| |  || 
seq2  AGATTGTATAAAAACTGTCATACT-ATTGTC-ACTA--CAAATCC--ACC  1082

seq1  ATTCATTCTTTGTCAGCATCAACCATTGTATTATTTCTGCTTTATCATCC  1150
      ||  |||||||||||||||||  |||   |||| |||||||||||||| |
seq2  ATCAATTCTTTGTCAGCATCA--CAT--GATTA-TTCTGCTTTATCAT-C  1126

seq1  AATACTTAAAACAATAGCTTACAAATTGTTTGTCTCGGTGTTTTTATTTC  1200
      ||||| |||    ||||| ||| ||||| |||||||||    |||||| |
seq2  AATACCTAA---CATAGC-TACCAATTG-TTGTCTCGG----TTTATTCC  1167

seq1  ACAATGTGTGTCCTTCATAGCTTCTTATAGAAAAAGACATCAATATGACT  1250
      |     ||||| ||   |||| |||||    ||||||| ||||| |||||
seq2  A-----TGTGTTCT--CTAGC-TCTTA---GAAAAGAC-TCAATTTGACT  1205

seq1  AAAACCTCG  1259
       ||||||||
seq2  TAAACCTCG  1214

seq1: chr4_68832216_68832732
seq2: B6Ng01-121M14.g_270_790

seq1  TTTTTTTTTTGTTGTTGTTGTT-GTTTTTTTTTTCTTTCCATTTTTTATT  49
      ||||||||||||||||||||||  ||||||||||||||||||||||||||
seq2  TTTTTTTTTTGTTGTTGTTGTTCTTTTTTTTTTTCTTTCCATTTTTTATT  50

seq1  AGGTATATAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATA  99
      |||||| ||||||||||||||||||||||||||||||||| ||| |||||
seq2  AGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAATTCCACCATA  100

seq1  CCCACCCACCCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGG  149
      ||| ||||||||||||||| ||||| ||||||||||||||||||||||| 
seq2  CCCCCCCACCCCCACTCCCTTACCCGCCCACTCCCCCTTTTTGGCCCTGA  150

seq1  CATTCCCCTGTTCTGGGGCATATAAAGTTTGTGTGTCCAATGGGCCTCTC  199
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCCCCTGTTCTGGGGCATATAAAGTTTGTGTGTCCAATGGGCCTCTC  200

seq1  TTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAG  249
      ||||  ||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTCTGGTGATGGCCGACTAGGCCATCCTTTGATACATATGCAGCTAGAG  250

seq1  TCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGATCCACCTATAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGATCCACCTATAGG  300

seq1  GTTGCAGATCCCTTTAGCTCTTTGGGTACTTTCTCTAGCTCCTCCATTGG  349
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGG  350

seq1  GAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCATCCAC-TTCTGTGT  398
      |||||||||||||||||| ||||||||||||| |||||||| ||||||||
seq2  GAGCCCTGTGATCCATCCCTTAGCTGACTGTGGGCATCCACTTTCTGTGT  400

seq1  TTGCTAGGCCCCAGCATAGTCTCACAAGAGACAGCTACATCTGGGTCC-T  447
      |||||||||||| ||||||||||||||||||||||||||||||||||| |
seq2  TTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTT  450

seq1  TTCGATAAAATCTTGCTAGTGTATGC-AATGGTGTCAGCGTTTGGATGCT  496
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTCGATAAAATCTTGCTAGTGTATGCAAATGGTGTCAGCGTTTGGATGCT  500

seq1  GATTATGGGGTGGATCCCTGG  517
      |||||||||||||||||||||
seq2  GATTATGGGGTGGATCCCTGG  521