BAC Information

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BAC

Clone NameB6Ng01-121M22
Chromosome6 (Build37)
Map Location 111,965,260 - 111,965,508
singlet/doubletsinglet
Overlap genenone
Upstream geneGrm7
Downstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076, EG434077, Rad18, Srgap3, EG666387, EG620161, LOC666397
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121M22.bB6Ng01-121M22.g
ACCDH925396DH925397
length1,160666
definitionDH925396|Mus musculus domesticus DNA, BAC clone: B6Ng01-121M22, 5' end.DH925397|Mus musculus domesticus DNA, BAC clone: B6Ng01-121M22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaacccaacaattgccaagtgggacctcataaagctaaaacacag
aggatctgaaagaagattatatgcagattatataaagaactaaaatgcag
cagcagcagcaacaacaacaacaaaaacaacaaaaacaaaacaaagaaaa
ccaattgaattgaggtatgcatctgacaagtaaattcttagtaaaagaaa
gagaaatatctaagtacaattattaagggttaagggctgaacatccttag
cagtttgggaaatgcaaaggaaatttgagatttcatcttatcctggtctg
attggctaagatcaaagaaacaatgaatgttgtcttagttcaggttttct
gctgtaaacagacacaaaactgaggcaacccttataaggacaccatttaa
ttggggcaagcttagaagttcaaaggttcagtccattatcaccgatgcag
gaaaacagcagcatccaagcaggtatggtggaggggatggtgagagttct
acatcttcatctgaaggttgataggggaagactggctcccatgtttttag
gaggagggtctcattgcccactccaacacacttacaccaacatggccaca
ttttctaatagtgctactacctgggccaagtatattcaaactaccacata
tgtctaaatttagaagttctatttaacaggatgaaaatcatgcttgttct
gtaaattaggccaactatctgtgcctagtgaggttatagatctaaggaga
tactatcgctgcctattttctaagccagtataatttctatctgcattgca
aacacccattcttacacacataaatacatgtacctctcacccctcaacaa
agaagtcttttttacagaagacagagacagttagaaaagtcaatgtttgg
tcagatgaagaatcaaatgactttcagatgctcaatcccccaataattca
tctctaagaaaatccctacatctaagtctaaaaagaaaatcagagaagag
gagataaaagctttaagagccagagacataagaaatctgcttcaaggatt
ttggctccagggagaatgggaaaaactgcaccataagttcaacacaatgg
gtttctaaaaaaatatttaacaaattcataaccaatttggacacctatta
gagaaatggc
gaattctgtttatctctgtacttcattttttttaattgaattattgtttt
ttgaaggttaacttcttgagcttttatacattttggatactagctctcta
ctggatatggggttcttgaagaattttttcccaaactgttgctgatttat
cctattgaatttgtcctgttgactgtcttttgacttataggagcttttca
gttttatgaggtaccattataaaattgcatatatatatatatatatatat
tatatatatatataatatatatatatattcaaatgaatataaacatacat
gtgtgtgcatgtacagaaacacatacacatatacatacacacagattata
catacatatatgtatgtgtatatatatgtatatatatatatatatatata
tatatatatatatatatatatatatatatatatatatatatatattgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatat
atatatatatatatatatatatatatatatatatatatatatatatatat
atatatatatatatatatatatatatagacacacacacacgagcaaacat
acacacacacacatacacacacatacacacatacacatatatatatgtgt
atatgtgtgtgagtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_111965260_111965508
seq2: B6Ng01-121M22.g_338_732

seq1  --------------------------------------------------  0
                                                        
seq2  TATATATTCAAATGAATATAAACATACATGTGTGTGCATGTACAGAAACA  50

seq1  --------TATATAT---------TTATACAT--GTGTGTGTGTGTGTAT  31
              |||| ||         ||||||||   | | ||| |||||||
seq2  CATACACATATACATACACACAGATTATACATACATATATGTATGTGTAT  100

seq1  GTGTGTGTGTGTATATATATATATATATATATATATATATATATATATAT  81
       | | ||| | |||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTATATATATATATATATATATATATATATATATATATATATAT  150

seq1  ATGGTCACAAATATATATATACATATATATAGT-----------------  114
      ||      | ||||||||||| |||||||| ||                 
seq2  AT------ATATATATATATATATATATATTGTGTGTGTGTGTGTGTGTG  194

seq1  ------------------------TTTACATTTATCTATATGTATATATA  140
                              | || || ||| ||||| ||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTATATATATATATATATATATATATATA  244

seq1  TGTGTATATATGTGTATATATATGTATATACATGTATATATATATATGTG  190
      | | ||||||| | ||||||||| |||||| || ||||||||||||| | 
seq2  TATATATATATATATATATATATATATATATATATATATATATATATATA  294

seq1  TGTGTGTATAT---------------------------------------  201
      | | | |||||                                       
seq2  TATATATATATAGACACACACACACGAGCAAACATACACACACACACATA  344

seq1  -------ATACGTATATACACGTATATATATGTGTATATATATGTGTGTG  244
             ||||  | |||||| ||||||||||||    ||||||||||||
seq2  CACACACATACACACATACACATATATATATGTG----TATATGTGTGTG  390

seq1  TGTGT  249
       ||||
seq2  AGTGT  395