BAC Information

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BAC

Clone NameB6Ng01-121P12
Chromosome6 (Build37)
Map Location 59,100,037 - 59,248,275
singlet/doubletdoublet
Overlap geneTigd2
Upstream geneLOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954, Abcg2, Herc3, Nap1l5, D430015B01Rik
Downstream geneGprin3, EG634166, EG627108, EG434019, LOC671300, EG627178, LOC100041706
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121P12.bB6Ng01-121P12.g
ACCDH925517DH925518
length5241,084
definitionDH925517|Mus musculus domesticus DNA, BAC clone: B6Ng01-121P12, 5' end.DH925518|Mus musculus domesticus DNA, BAC clone: B6Ng01-121P12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,247,746 - 59,248,275)(59,100,037 - 59,101,164)
sequence
tttatgaatttaagaataaaagtaagaatttgtaaaatcaataacaagta
agtcatattttataacataaaaatacattaaaattatgttgtatttgtta
gagtaatgcatgtacaggtttgtgtgcaaatgtgtgtacccatgagcaca
cgtggaggcaaggagaaggtgctgagtctcctgctttatcacgttctact
ttcctccattaagacatggtgtttcactgaatctggaggtaggctcacag
ctacatccaacattttacatgatgtttgtgattaaaacttaggtctccat
gcttacgtataaaatgttcttacccactgagctatctcgtcccgtgggat
tcagttattcgtgggtgcaagggggaccacaaacctggaaggaaaaggga
ggaagggtaggagaggcaggagaggcaggagaccaagaagggtacctatc
aaggtctcgtttattatgctgaggtgccttctttttaaagcatacatcgc
ggggaataggggaggagtgggagt
gaattctttgggagaaaaaatatcccagaaaacttaaaatgaagaataaa
gttgaaaagttccattcataattctcaatatgaatagtttcactccagca
acaaagaaaaaaattatattgagtataataaatgttatatattagaattt
tgaaagcattttatagttagaaagcaagtatcatggcatatactcataat
tccagtagtcagaagacagaggcaggaggattacaagtacagtgccagct
acgtaacttggcaaggcttgtttcaaacagtacgaaatatcaaaacattt
ttgattgctgccagtaagtgatatgtatcatctttgatagaagtcaatat
ggaaggtcgaaatcacaatctaaaactgatcctatctttacgcttcagga
acacttgcaattgttgctgattagcactgaaagacttggtgaagaggaag
aactcactcatagatctacccataaagcaagcaaagaccagaggcatcgt
ggattaaaatgctttacccattagtagcaattgcaaaatttgttttcact
agagattaaagacatggatattttaagtcataaaaactaattgaatatat
acaatgaatttaatgtaaagtgccaagaatattagcaagcaacagaattt
aaaaagtgaaacacgagctaaagatcaatagagtcttttgtttcttccca
tcacttaataagtaagtgtctaattaaccgtaaaccacagtaaacacaga
atcagccatctgtgcagtgtctggcttctatcaagatgattcacaactcc
tgaagctagtttaagaagaaataaataaaatcagccgtcaatgaatgcag
gttgttctgggaagttgttaggcctaagtaatctgagatattcttcaggc
acatccatgtagctgagcttcacttgatgatagactaggctttcattctc
tctctctctctctgatttttaagtttctatagatatttttctcattacat
ttcaatgctatcccaaagtcctataccttcctgcctactccctaccacgc
ctccactctgctgcatcctgtactgggcatataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_59247746_59248275
seq2: B6Ng01-121P12.b_48_577 (reverse)

seq1  ACTCCCACTCCTCCCCTATTCCCCGCGATGTATGCTTTAAAAAGAAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCACTCCTCCCCTATTCCCCGCGATGTATGCTTTAAAAAGAAGGCA  50

seq1  CCTCAGCATAATAAACGAGACCTTGATAGGTACCCTTCTTGGTCTCCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCATAATAAACGAGACCTTGATAGGTACCCTTCTTGGTCTCCTGC  100

seq1  CTCTCCTGCCTCTCCTACCCTTCCTCCCTTTTCCTTCCAGGTTTGTGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTGCCTCTCCTACCCTTCCTCCCTTTTCCTTCCAGGTTTGTGGTC  150

seq1  CCCCTTGCACCCACGAATAACTGAATCCCACGGGACGAGATAGCTCAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGCACCCACGAATAACTGAATCCCACGGGACGAGATAGCTCAGTG  200

seq1  GGTAAGAACATTTTATACGTAAGCATGGAGACCTAAGTTTTAATCACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGAACATTTTATACGTAAGCATGGAGACCTAAGTTTTAATCACAAA  250

seq1  CATCATGTAAAATGTTGGATGTAGCTGTGAGCCTACCTCCAGATTCAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGTAAAATGTTGGATGTAGCTGTGAGCCTACCTCCAGATTCAGTG  300

seq1  AAACACCATGTCTTAATGGAGGAAAGTAGAACGTGATAAAGCAGGAGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCATGTCTTAATGGAGGAAAGTAGAACGTGATAAAGCAGGAGACT  350

seq1  CAGCACCTTCTCCTTGCCTCCACGTGTGCTCATGGGTACACACATTTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCTTCTCCTTGCCTCCACGTGTGCTCATGGGTACACACATTTGCA  400

seq1  CACAAACCTGTACATGCATTACTCTAACAAATACAACATAATTTTAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACCTGTACATGCATTACTCTAACAAATACAACATAATTTTAATGT  450

seq1  ATTTTTATGTTATAAAATATGACTTACTTGTTATTGATTTTACAAATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATGTTATAAAATATGACTTACTTGTTATTGATTTTACAAATTCT  500

seq1  TACTTTTATTCTTAAATTCATAAAGAATTC  530
      ||||||||||||||||||||||||||||||
seq2  TACTTTTATTCTTAAATTCATAAAGAATTC  530

seq1: chr6_59100037_59101164
seq2: B6Ng01-121P12.g_67_1150

seq1  GAATTCTTTGGGAGAAAAAATATCCCAGAAAACTTAAAATGAAGAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGGAGAAAAAATATCCCAGAAAACTTAAAATGAAGAATAAA  50

seq1  GTTGAAAAGTTCCATTCATAATTCTCAATATGAATAGTTTCACTCCAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAAAGTTCCATTCATAATTCTCAATATGAATAGTTTCACTCCAGCA  100

seq1  ACAAAGAAAAAAATTATATTGAGTATAATAAATGTTATATATTAGAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAAAAAAATTATATTGAGTATAATAAATGTTATATATTAGAATTT  150

seq1  TGAAAGCATTTTATAGTTAGAAAGCAAGTATCATGGCATATACTCATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCATTTTATAGTTAGAAAGCAAGTATCATGGCATATACTCATAAT  200

seq1  TCCAGTAGTCAGAAGACAGAGGCAGGAGGATTACAAGTACAGTGCCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTAGTCAGAAGACAGAGGCAGGAGGATTACAAGTACAGTGCCAGCT  250

seq1  ACGTAACTTGGCAAGGCTTGTTTCAAACAGTACGAAATATCAAAACATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAACTTGGCAAGGCTTGTTTCAAACAGTACGAAATATCAAAACATTT  300

seq1  TTGATTGCTGCCAGTAAGTGATATGTATCATCTTTGATAGAAGTCAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGCTGCCAGTAAGTGATATGTATCATCTTTGATAGAAGTCAATAT  350

seq1  GGAAGGTCGAAATCACAATCTAAAACTGATCCTATCTTTACGCTTCAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTCGAAATCACAATCTAAAACTGATCCTATCTTTACGCTTCAGGA  400

seq1  ACACTTGCAATTGTTGCTGATTAGCACTGAAAGACTTGGTGAAGAGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGCAATTGTTGCTGATTAGCACTGAAAGACTTGGTGAAGAGGAAG  450

seq1  AACTCACTCATAGATCTACCCATAAAGCAAGCAAAGACCAGAGGCATCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACTCATAGATCTACCCATAAAGCAAGCAAAGACCAGAGGCATCGT  500

seq1  GGATTAAAATGCTTTACCCATTAGTAGCAATTGCAAAATTTGTTTTCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAAATGCTTTACCCATTAGTAGCAATTGCAAAATTTGTTTTCACT  550

seq1  AGAGATTAAAGACATGGATATTTTAAGTCATAAAAACTAATTGAATATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTAAAGACATGGATATTTTAAGTCATAAAAACTAATTGAATATAT  600

seq1  ACAATGAATTTAATGTAAAGTGCCAAGAATATTAGCAAGCAACAGAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAATTTAATGTAAAGTGCCAAGAATATTAGCAAGCAACAGAATTT  650

seq1  AAAAAGTGAAACACGAGCTAAAGATCAATAGAGTCTTTTGTTTCTTCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGAAACACGAGCTAAAGATCAATAGAGTCTTTTGTTTCTTCCCA  700

seq1  TCACTTAATAAGTAAGTGTCTAATTAACCGTAAACCACAGTAAACACAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTAATAAGTAAGTGTCTAATTAACCGTAAACCACAGTAAACACAGA  750

seq1  ATCAGCCATCTGTGCAGTGTCTGGCTTCTATCAAGATGATTCACAACTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCCATCTGTGCAGTGTCTGGCTTCTATCAAGATGATTCACAACTCC  800

seq1  TGAAGCTAGTTTAAGAAAGAAATAAATAAAATCAGCCGTCAATGAATGCA  850
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGAAGCTAGTTTAAG-AAGAAATAAATAAAATCAGCCGTCAATGAATGCA  849

seq1  GGTTGTTCTGGGAAGTTGTTAGGCCTAAGGTAATCTGAGAATATTCTTCA  900
      |||||||||||||||||||||||||||| |||||||||| ||||||||||
seq2  GGTTGTTCTGGGAAGTTGTTAGGCCTAA-GTAATCTGAG-ATATTCTTCA  897

seq1  GGGCAACATCCCATGTAGCTGAGCCTCCAACTTGAATGAATAGACTAAGG  950
      ||   |||| |||||||||||||| ||  ||||| ||| ||||||||  |
seq2  GG--CACAT-CCATGTAGCTGAGCTTC--ACTTG-ATG-ATAGACTA--G  938

seq1  GCTTTCCTTTTCTCTCTCTCTCTCTCTTTGATTTTTTAAAGTTTTCTATT  1000
      |||||| |    ||||||||||||||| ||||||||  ||| |||||| |
seq2  GCTTTCAT----TCTCTCTCTCTCTCTCTGATTTTT--AAG-TTTCTA-T  980

seq1  AGATATTTTCTTCATTTACATTTCAAATGCTATCCCAAAAGTCCCCTATA  1050
      |||||||||  ||| ||||||||| ||||||||||| |||||  ||||||
seq2  AGATATTTTTCTCA-TTACATTTC-AATGCTATCCC-AAAGT--CCTATA  1025

seq1  CCCTTTCCCCTGCCCTACTCCCCTACCCACGCACTTCCACTTCTTGGCCC  1100
      || |    |||| |||||| ||||| |||||  | ||||||        |
seq2  CCTT----CCTG-CCTACT-CCCTA-CCACG--CCTCCACT--------C  1058

seq1  TG--GCATTCCCCTGTACTGGGGCATATAA  1128
      ||  ||||   |||||||| ||||||||||
seq2  TGCTGCAT---CCTGTACT-GGGCATATAA  1084