BAC Information

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BAC

Clone NameB6Ng01-122E17
Chromosome6 (Build37)
Map Location 127,280,913 - 127,439,245
singlet/doubletdoublet
Overlap geneEG640703, LOC100043848, Parp11
Upstream geneLOC667427, LOC100043567, Kcna5, Kcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11, EG243642, LOC100043578
Downstream geneEfcab4b, Prmt8, Tspan11, Tspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122E17.bB6Ng01-122E17.g
ACCDH925757DH925758
length1,1981,114
definitionDH925757|Mus musculus domesticus DNA, BAC clone: B6Ng01-122E17, 5' end.DH925758|Mus musculus domesticus DNA, BAC clone: B6Ng01-122E17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,280,913 - 127,282,124)(127,438,115 - 127,439,245)
sequence
gaattcaccctacagctcagggaggcctagaatttgtgagggcttttttt
tctaccctagcctttagagtggaagtgcaggaaagattacaggcatgagc
cctttatgcccggcacaaccgtagctcttgtcttctgtcaacctaaatac
atttttttgttgtatggggttgtttttgagatagtgtctcgtgtgtccca
ggctggccttaaatctactgaggatgacctaaaatgtctgatccacctcc
cggttgctgggattgtgggactatacagttaacacttggttttatgcagt
gctgtggatcaaacccagggtctcctgcgggccaagcaagcgtgtcactg
aagacctagagctcccagtcctgtttgctcatctctaaaatgagatatgt
aggccagccctcttcccaggccctggctcaaagcctggttcttatctgga
gtatgcaaggaacgttgaggtttgattccagtccctctgttccgatttcc
cacagaaccccccaagtgctttcttatttggcacatggcatctagccatt
gagtcaaaacagagggtcctctcttcccttccagcctcccttctgtccag
ctgtgcagcacagtttcatatcccctctgcttgcctctagcgtttgcacc
acctgccccatcacttagacacaccatgtttcttcccttgtctgttttcc
aggtctctgcagaaatggtccattctctctgtgccttaattttctgtagg
tcccgttgctgtcatttatgtggcatcccaaaccacaattgtagtttctt
ctgttagacaggataggaaccactgttggtttgttttgtgcacctcttta
gtccctagcatgtgataattattaaattgaagttatttttagaaagaaaa
gaaaaagtctgagagcagagcctggttgtagaggtaaagggtgctagaac
ctggctctgctccatcgtttctgtagaaaatagattattgaaatgtatct
tgaggggagtcacaatcatgctccaacataggcctgtctcatgtggatag
gagcttttgttcctttccaaatggtaaggtcaattcattatctgtctgcc
aagtatatgggaaatctaacccagccaacacccacaaggttaacgaactc
ttctgtggagagacaaggccttctttgagacctagagatctcgccatc
gaattctttctcagagctggaactccatcttatccttctcatgcccagtc
tgagcagctgactggattcagaaccctacaaagcatcaagctctagttca
gcatccttctctgcaagcgcatctccagtgcacagagatggaggactgtc
atagtaatctcagaaaagacaaaaccaaaagcctaaaagccttccataga
aggaggcacacttatctatttacatagaaacagtaggagtcaggtattca
gggagttgttttaattccagcacttgggagatagaagcttgaaaatcttt
gtgaatttgaggccagccgagtctacatagtatgttccagacaagccata
gctacatagtaagaccttgactcacagaaacaaaagttaaaataaacgat
gttcatgtgcactataaatacaaaagataataagcctaagtagaatgtgg
gaaaagtcaaagtattttgcaaaataacacagttcattaattatacagat
ctacatgcccacccaggaaataaaaacatacattctgcaggcaagaaagc
atctccttttgagaggaaacaagaacgggatgggatggaggaaacctgtt
gcctctgcctgagagatgtgggatgaagacaacatgtgaagggctgagat
gtcaaatctgatgatgggcatgcaggggtgtgcaagctgcctgtggcatt
tggggttttgaaatacttcaccaaaaagatatttacaatagtgcactctc
tgacttctctggtagctcacctgagctgtgctgagcctttccttaaaaac
ataatacatgtaaacacaaaagcacactcagaatataccagtaagtgatt
tttataaccttaagagcaggtctataggaaggctggggcacagaagcact
tccgtaacataaccatgatgggcaggcagcagcttcaatcatctagtgca
aagatgcgtggctggaacaccttgtgatcatctggaactcaacaagtccg
ccttccacactgcctagatcccaccctctttgttgtactgactggcctag
aaattctctaacccagagcagctcttttgttttttttctaataacttaca
tagatggcccaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_127280913_127282124
seq2: B6Ng01-122E17.b_48_1245

seq1  GAATTCACCCTACAGCTCAGGGAGGCCTAGAATTTGTGAGGGCTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCTACAGCTCAGGGAGGCCTAGAATTTGTGAGGGCTTTTTTT  50

seq1  TCTACCCTAGCCTTTAGAGTGGAAGTGCAGGAAAGATTACAGGCATGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCTAGCCTTTAGAGTGGAAGTGCAGGAAAGATTACAGGCATGAGC  100

seq1  CCTTTATGCCCGGCACAACCGTAGCTCTTGTCTTCTGTCAACCTAAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATGCCCGGCACAACCGTAGCTCTTGTCTTCTGTCAACCTAAATAC  150

seq1  ATTTTTTTGTTGTATGGGGTTGTTTTTGAGATAGTGTCTCGTGTGTCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTGTTGTATGGGGTTGTTTTTGAGATAGTGTCTCGTGTGTCCCA  200

seq1  GGCTGGCCTTAAATCTACTGAGGATGACCTAAAATGTCTGATCCACCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCCTTAAATCTACTGAGGATGACCTAAAATGTCTGATCCACCTCC  250

seq1  CGGTTGCTGGGATTGTGGGACTATACAGTTAACACTTGGTTTTATGCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTGCTGGGATTGTGGGACTATACAGTTAACACTTGGTTTTATGCAGT  300

seq1  GCTGTGGATCAAACCCAGGGTCTCCTGCGGGCCAAGCAAGCGTGTCACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGATCAAACCCAGGGTCTCCTGCGGGCCAAGCAAGCGTGTCACTG  350

seq1  AAGACCTAGAGCTCCCAGTCCTGTTTGCTCATCTCTAAAATGAGATATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTAGAGCTCCCAGTCCTGTTTGCTCATCTCTAAAATGAGATATGT  400

seq1  AGGCCAGCCCTCTTCCCAGGCCCTGGCTCAAAGCCTGGTTCTTATCTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCCCTCTTCCCAGGCCCTGGCTCAAAGCCTGGTTCTTATCTGGA  450

seq1  GTATGCAAGGAACGTTGAGGTTTGATTCCAGTCCCTCTGTTCCGATTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCAAGGAACGTTGAGGTTTGATTCCAGTCCCTCTGTTCCGATTTCC  500

seq1  CACAGAACCCCCCAAGTGCTTTCTTATTTGGCACATGGCATCTAGCCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAACCCCCCAAGTGCTTTCTTATTTGGCACATGGCATCTAGCCATT  550

seq1  GAGTCAAAACAGAGGGTCCTCTCTTCCCTTCCAGCCTCCCTTCTGTCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAAAACAGAGGGTCCTCTCTTCCCTTCCAGCCTCCCTTCTGTCCAG  600

seq1  CTGTGCAGCACAGTTTCATATCCCCTCTGCTTGCCTCTAGCGTTTGCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAGCACAGTTTCATATCCCCTCTGCTTGCCTCTAGCGTTTGCACC  650

seq1  ACCTGCCCCATCACTTAGACACACCATGTTTCTTCCCTTGTCTGTTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCCCATCACTTAGACACACCATGTTTCTTCCCTTGTCTGTTTTCC  700

seq1  AGGTCTCTGCAGAAATGGTCCATTCTCTCTGTGCCTTAATTTTCTGTAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCTGCAGAAATGGTCCATTCTCTCTGTGCCTTAATTTTCTGTAGG  750

seq1  TCCCGTTGCTGTCATTTATGTGGCATCCCAAACCACAATTGTAGTTTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGTTGCTGTCATTTATGTGGCATCCCAAACCACAATTGTAGTTTCTT  800

seq1  CTGTTAGACAGGATAGGAACCACTGTTGGTTTGTTTTGTGCACCTCTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAGACAGGATAGGAACCACTGTTGGTTTGTTTTGTGCACCTCTTTA  850

seq1  GTTCCTAGCATGTGATAATTATTAAATTGAAGTTATTTTTAGAAAGAAAA  900
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTAGCATGTGATAATTATTAAATTGAAGTTATTTTTAGAAAGAAAA  900

seq1  GAAAAAGTCTGAGAAGCAGAGCCTGGTTGTAGAGGTAAAGGGTGCTAGAA  950
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGTCTGAG-AGCAGAGCCTGGTTGTAGAGGTAAAGGGTGCTAGAA  949

seq1  CCTGGCTCTGCTCCATCGTTTCTGTTAGAAAATTAGATTATTGAATAATG  1000
      |||||||||||||||||||||||| ||||||| |||||||||||  ||||
seq2  CCTGGCTCTGCTCCATCGTTTCTG-TAGAAAA-TAGATTATTGA--AATG  995

seq1  TATCTTGAGGGGAGTCACAAATCAATGCTCAAACATAAGCCTGTCTCATG  1050
      |||||||||||||||||| |||| |||||| |||||| ||||||||||||
seq2  TATCTTGAGGGGAGTCAC-AATC-ATGCTCCAACATAGGCCTGTCTCATG  1043

seq1  TGGATAAGGTAGC-TTTGTT-CTTTCCAGATGGGTAAAAGGTCCATTCAT  1098
      ||||||  | ||| |||||| ||||||| ||||    |||||| ||||||
seq2  TGGATA--GGAGCTTTTGTTCCTTTCCAAATGG---TAAGGTCAATTCAT  1088

seq1  TTATTCGTTCTG-CAAGTATGATGGGACATCTAACCTAAGCCAAGCAACC  1147
      |   ||  |||| ||||||| |||||| ||||||||  |||||| || ||
seq2  T--ATCTGTCTGCCAAGTAT-ATGGGAAATCTAACC-CAGCCAA-CACCC  1133

seq1  CAAAGGTAAACAAA--CTTCTGTGGAGAG-CAAGGCCCTTCTTGAGAGCC  1194
        ||||| ||| ||  ||||||||||||| ||||||| |  |||||| ||
seq2  ACAAGGTTAACGAACTCTTCTGTGGAGAGACAAGGCCTTCTTTGAGA-CC  1182

seq1  TAGAGATCACTCGCCATC  1212
      |||||||  |||||||||
seq2  TAGAGAT--CTCGCCATC  1198

seq1: chr6_127438115_127439245
seq2: B6Ng01-122E17.g_68_1181 (reverse)

seq1  GGGTGGGGCTATCTATGT-AGTTATTTTATGAAAAAAAAAAAAAAGAGCT  49
      |||| |||| |||||||| ||||||    |  |||||||| |||||||||
seq2  GGGT-GGGCCATCTATGTAAGTTAT----TAGAAAAAAAACAAAAGAGCT  45

seq1  GCTCTGTGTTTAGAAGAATGTCCTAGGCCAGTCAGTACAACAAAGA-GGT  98
      |||||| | |||| ||||| | |||||||||||||||||||||||| |||
seq2  GCTCTG-GGTTAG-AGAAT-TTCTAGGCCAGTCAGTACAACAAAGAGGGT  92

seq1  GGGTTCTAGTGCAGTGTTGGGAGGCGTGTACTTTGTTGGAGTTCCAGATG  148
      ||| ||||| |||||| ||| ||||  | || ||||| ||||||||||||
seq2  GGGATCTAG-GCAGTG-TGGAAGGC--GGAC-TTGTT-GAGTTCCAGATG  136

seq1  ATCACAGGGTGTTCCAGCCACGCATCTTTGGCACTAGAATGGATTGAAGC  198
      |||||| |||||||||||||||||||||| ||||||||   |||||||||
seq2  ATCACAAGGTGTTCCAGCCACGCATCTTT-GCACTAGA--TGATTGAAGC  183

seq1  TGCTGCCTGCCCATCATGGTTATGTTACGGAAGTGC-TCTGTGCCCCAGC  247
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGCTGCCTGCCCATCATGGTTATGTTACGGAAGTGCTTCTGTGCCCCAGC  233

seq1  CTTCCTATAGAACCCTGCTCTTTAAGGTTATAAAAATCACTTACTGGTAT  297
      |||||||||||  ||||||| |||||||||||||||||||||||||||||
seq2  CTTCCTATAGA--CCTGCTC-TTAAGGTTATAAAAATCACTTACTGGTAT  280

seq1  ATTCTGAGTGTGCTTTTGTGTTTACATGTATTATGTTTTTAAGGAAAGGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAGTGTGCTTTTGTGTTTACATGTATTATGTTTTTAAGGAAAGGC  330

seq1  TCAGCACAGCTCAGGTGAGCTACCAGAGAAGTCAGAGAGTGCACTATTGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACAGCTCAGGTGAGCTACCAGAGAAGTCAGAGAGTGCACTATTGT  380

seq1  AAATATCTTTTTGGTGAAGTATTTCAAAACCCCAAATGCCACAGGCAGCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTTTTTGGTGAAGTATTTCAAAACCCCAAATGCCACAGGCAGCT  430

seq1  TGCACACCCCTGCATGCCCATCATCAGATTTGACATCTCAGCCCTTCACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACCCCTGCATGCCCATCATCAGATTTGACATCTCAGCCCTTCACA  480

seq1  TGTTGTCTTCATCCCACATCTCTCAGGCAGAGGCAACAGGTTTCCTCCAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCTTCATCCCACATCTCTCAGGCAGAGGCAACAGGTTTCCTCCAT  530

seq1  CCCATCCCGTTCTTGTTTCCTCTCAAAAGGAGATGCTTTCTTGCCTGCAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCCGTTCTTGTTTCCTCTCAAAAGGAGATGCTTTCTTGCCTGCAG  580

seq1  AATGTATGTTTTTATTTCCTGGGTGGGCATGTAGATCTGTATAATTAATG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATGTTTTTATTTCCTGGGTGGGCATGTAGATCTGTATAATTAATG  630

seq1  AACTGTGTTATTTTGCAAAATACTTTGACTTTTCCCACATTCTACTTAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGTTATTTTGCAAAATACTTTGACTTTTCCCACATTCTACTTAGG  680

seq1  CTTATTATCTTTTGTATTTATAGTGCACATGAACATCGTTTATTTTAACT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTATCTTTTGTATTTATAGTGCACATGAACATCGTTTATTTTAACT  730

seq1  TTTGTTTCTGTGAGTCAAGGTCTTACTATGTAGCTATGGCTTGTCTGGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCTGTGAGTCAAGGTCTTACTATGTAGCTATGGCTTGTCTGGAA  780

seq1  CATACTATGTAGACTCGGCTGGCCTCAAATTCACAAAGATTTTCAAGCTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTATGTAGACTCGGCTGGCCTCAAATTCACAAAGATTTTCAAGCTT  830

seq1  CTATCTCCCAAGTGCTGGAATTAAAACAACTCCCTGAATACCTGACTCCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCCCAAGTGCTGGAATTAAAACAACTCCCTGAATACCTGACTCCT  880

seq1  ACTGTTTCTATGTAAATAGATAAGTGTGCCTCCTTCTATGGAAGGCTTTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTCTATGTAAATAGATAAGTGTGCCTCCTTCTATGGAAGGCTTTT  930

seq1  AGGCTTTTGGTTTTGTCTTTTCTGAGATTACTATGACAGTCCTCCATCTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTTGGTTTTGTCTTTTCTGAGATTACTATGACAGTCCTCCATCTC  980

seq1  TGTGCACTGGAGATGCGCTTGCAGAGAAGGATGCTGAACTAGAGCTTGAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACTGGAGATGCGCTTGCAGAGAAGGATGCTGAACTAGAGCTTGAT  1030

seq1  GCTTTGTAGGGTTCTGAATCCAGTCAGCTGCTCAGACTGGGCATGAGAAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTAGGGTTCTGAATCCAGTCAGCTGCTCAGACTGGGCATGAGAAG  1080

seq1  GATAAGATGGAGTTCCAGCTCTGAGAAAGAATTC  1131
      ||||||||||||||||||||||||||||||||||
seq2  GATAAGATGGAGTTCCAGCTCTGAGAAAGAATTC  1114