BAC Information

Click to search

BAC

Clone NameB6Ng01-122N06
Chromosome6 (Build37)
Map Location 52,037,704 - 52,189,340
singlet/doubletdoublet
Overlap geneLOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxa10
Upstream geneEG625167, Nfe2l3, Hnrpa2b1, Cbx3, Snx10, LOC100041820, Skap2
Downstream geneHoxa11, Hoxa13, Evx1, EG666487, 1700094M24Rik, EG545841, Hibadh, Tax1bp1, Jazf1, LOC666259, LOC666516, D430007I03
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122N06.bB6Ng01-122N06.g
ACCDH926154DH926155
length1,1801,046
definitionDH926154|Mus musculus domesticus DNA, BAC clone: B6Ng01-122N06, 5' end.DH926155|Mus musculus domesticus DNA, BAC clone: B6Ng01-122N06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,037,704 - 52,038,888)(52,188,292 - 52,189,340)
sequence
gaattccatctccaaggcttgggacagagcaaattgtctctgtaataaat
cattatccgtccagtgtgtggttggcctactaagcatcttacctgagctc
agaaacaaacggagtaaaaagtagccggagaccgtcacggtaaagggggt
tcccacaaataacaaataacacaaactccgaaggaaaatgcaagctggac
aatatttattgtgccagtttaaagactaagatctattactatttcctgcc
tgaggcttcaaaattgttctcactctcctataattttccagccatggaca
atgagattatgcgtgcacatgagatcgtcctcggagacaattaggttatg
gagaacatttctctgcttcctcccgggcttcctagcactgcttcaaatct
aatagtaatagagtgttataaaggcaaatgagtcagtacagtccacttca
gacttaatcccatacaatatatttaaaatactcctataatttacttgaac
acccatgtccacaaggcaataaagcaaatgagcgtgtgtatcgatgaagg
gacagagaagcagttggcgccccagtccctgacccctaatggagtcaaca
acctgagtggccagccgttactgtttgtttcactgcccacccgtggccag
cttcactccaagtaatatttccaatatgtattataggacattggacaaat
gggtctgatttcttaaaatagccaccacatgcggggagcacaggaagtgc
tgagtgagtatgtaaagagcagatgaaagtcccctagcaaacgttcagtg
ttgatgtgggcacgccatgtcaaagaccaaggccttgacctctgggaaat
taggatccgagtgacaaaagtcttccttttgtcctgggatgagcaaatga
ttaaacagtgtgtgcaaagcagcacagcagcttcctcctcccagatgtct
acacccttgaagcgggctcaccgacggatacctccttttgagactagcaa
gctcctgttgtgccgacatataaacaaaggaagttcgaagttgctggagt
tgttggtgccacctccatcgagtatgcacagccactgatccaatgttctt
gtcccttctgctatccctcagaacctggcagagtttcttggaacccaagc
tgtaagaagcgtagccatctcgctataaaa
gaattccataacgtgtagatgcttcccctgtttgcaagtgtgtgagcgaa
aattgtgcttatgaatcactagttttgttaagcatgggctcctaagccat
gccaggaaaaaaaaagggcaaccggagcagccgtgagggcccactctgtg
aagtgcaggcagtaggacgggcaccttcttgcactccccatgagcctgag
ctgcttccagtgttaaggccagaaccagttccttccctacaaaactaata
gcactggtacttcaaaatgtctgacaaaaggacgcaatacttgccctgct
aaagatcgagggccagctcaatagtaggatttagagggaaaaattttttt
aaatattttaaggacagattgaacctggtaaacaacaacaaaacaacaaa
aaaatcaaacaaacaaagagaaagaaagaaaagcccgcacattaaatatg
gaatgtcaacattcataaagaaaagcagaaaagcaattttgctcatggaa
aaaaattctagttattcataaatatatgaatgggagaatttctgaaactg
tgttaatgctggacacattgaagctgtgttcactttccttcatgaagcct
caatccagcactacagccccctagatagctgagaaccccaaaaacattga
gaatgacttttgggtacaaacagatttgttatttcattctcatgacctgg
atttatttatgtatttatgtatttttttttattttttggttgtttttgtc
ttgttttgtcctggtgaaagttattttccctatttaagaatgtatttggg
gaagcttgtaaagggcctactcagggaagagaatctgttactaaagtaaa
aagcagaataatgggttacactttctttgattcgtttgcctggcatttct
ctcggtggagaagaatgtgtgttatcaccaggaagaaaaccgacatatta
ctcccggaacaacacgactctggcggtggcgcatcgatgtgatgctgaac
aagcttgttaagccagcagcactaagttttaagtcaaggcatccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_52037704_52038888
seq2: B6Ng01-122N06.b_48_1227

seq1  GAATTCCATCTCCAAGGCTTGGGACAGAGCAAATTGTCTCTGTAATAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTCCAAGGCTTGGGACAGAGCAAATTGTCTCTGTAATAAAT  50

seq1  CATTATCCGTCCAGTGTGTGGTTGGCCTACTAAGCATCTTACCTGAGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCCGTCCAGTGTGTGGTTGGCCTACTAAGCATCTTACCTGAGCTC  100

seq1  AGAAACAAACGGAGTAAAAAGTAGCCGGAGACCGTCACGGTAAAGGGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAACGGAGTAAAAAGTAGCCGGAGACCGTCACGGTAAAGGGGGT  150

seq1  TCCCACAAATAACAAATAACACAAACTCCGAAGGAAAATGCAAGCTGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACAAATAACAAATAACACAAACTCCGAAGGAAAATGCAAGCTGGAC  200

seq1  AATATTTATTGTGCCAGTTTAAAGACTAAGATCTATTACTATTTCCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTATTGTGCCAGTTTAAAGACTAAGATCTATTACTATTTCCTGCC  250

seq1  TGAGGCTTCAAAATTGTTCTCACTCTCCTATAATTTTCCAGCCATGGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTTCAAAATTGTTCTCACTCTCCTATAATTTTCCAGCCATGGACA  300

seq1  ATGAGATTATGCGTGCACATGAGATCGTCCTCGGAGACAATTAGGTTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATTATGCGTGCACATGAGATCGTCCTCGGAGACAATTAGGTTATG  350

seq1  GAGAACATTTCTCTGCTTCCTCCCGGGCTTCCTAGCACTGCTTCAAATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACATTTCTCTGCTTCCTCCCGGGCTTCCTAGCACTGCTTCAAATCT  400

seq1  AATAGTAATAGAGTGTTATAAAGGCAAATGAGTCAGTACAGTCCACTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTAATAGAGTGTTATAAAGGCAAATGAGTCAGTACAGTCCACTTCA  450

seq1  GACTTAATCCCATACAATATATTTAAAATACTCCTATAATTTACTTGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAATCCCATACAATATATTTAAAATACTCCTATAATTTACTTGAAC  500

seq1  ACCCATGTCCACAAGGCAATAAAGCAAATGAGCGTGTGTATCGATGAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGTCCACAAGGCAATAAAGCAAATGAGCGTGTGTATCGATGAAGG  550

seq1  GACAGAGAAGCAGTTGGCGCCCCAGTCCCTGACCCCTAATGGAGTCAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGAAGCAGTTGGCGCCCCAGTCCCTGACCCCTAATGGAGTCAACA  600

seq1  ACCTGAGTGGCCAGCCGTTACTGTTTGTTTCACTGCCCACCCGTGGCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGTGGCCAGCCGTTACTGTTTGTTTCACTGCCCACCCGTGGCCAG  650

seq1  CTTCACTCCAAGTAATATTTCCAATATGTATTATAGGACATTGGACAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTCCAAGTAATATTTCCAATATGTATTATAGGACATTGGACAAAT  700

seq1  GGGTCTGATTTCTTAAAATAGCCACCACATGCGGGGAGCACAGGAAGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGATTTCTTAAAATAGCCACCACATGCGGGGAGCACAGGAAGTGC  750

seq1  TGAGTGAGTATGTAAAGAGCAGATGAAAGTCCCCTAGCAAACGTTCAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAGTATGTAAAGAGCAGATGAAAGTCCCCTAGCAAACGTTCAGTG  800

seq1  TTGATGTGGGCACGCCATGTCAAAGACCAAGGCCTTGACCTCTGGGAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTGGGCACGCCATGTCAAAGACCAAGGCCTTGACCTCTGGGAAAT  850

seq1  TAGGATCCGAGTGACAAAAGTCTTCCTTTTGTCCTGGGATGAGCAAATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATCCGAGTGACAAAAGTCTTCCTTTTGTCCTGGGATGAGCAAATGA  900

seq1  TTAAACAGTGTGTGCAAAGCAGCAACAGCAGCTTCCTCCTCCCAGATGTC  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTAAACAGTGTGTGCAAAGCAGC-ACAGCAGCTTCCTCCTCCCAGATGTC  949

seq1  TACACCC-TGAAGCGGGCTCACCGACGGATACCTCCTTTTGAGACTAGCA  999
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCCTTGAAGCGGGCTCACCGACGGATACCTCCTTTTGAGACTAGCA  999

seq1  AGCTCCTGTTGTGCCGGACATAATAAACACAGGGAAGTTCGAGGTTGCTG  1049
      ||||||||||||||| ||||| ||||||| | |||||||||| |||||||
seq2  AGCTCCTGTTGTGCC-GACAT-ATAAACA-AAGGAAGTTCGAAGTTGCTG  1046

seq1  GAGTTGTTGGTGCCA-CTCCATCAGAGTATGCACAGCCCACCTGACCCCA  1098
      ||||||||||||||| ||||||| ||||||||||||||   |||| || |
seq2  GAGTTGTTGGTGCCACCTCCATC-GAGTATGCACAGCC--ACTGATCCAA  1093

seq1  -GTGTCTGTCCCCTCTGCATCCCCTCACAGACCTGAGCCAGAGTT--CTG  1145
       ||   |||||| |||||   |||||| | ||||  | |||||||   ||
seq2  TGTTCTTGTCCCTTCTGCTATCCCTCAGA-ACCT--GGCAGAGTTTCTTG  1140

seq1  GGACCCAAGCTG--AGAGACGTAGCCATCTCAGCCTATAAAA  1185
      | ||||||||||  |||  ||||||||||||   ||||||||
seq2  GAACCCAAGCTGTAAGAAGCGTAGCCATCTC--GCTATAAAA  1180

seq1: chr6_52188292_52189340
seq2: B6Ng01-122N06.g_66_1111 (reverse)

seq1  TGGGATGCCTTTGACCTAAAACCCTTGGTGCCTGCTGGCCTTAACCAGGC  50
      ||||||||| ||||| |||||  ||| ||| ||||||| ||||| || ||
seq2  TGGGATGCC-TTGACTTAAAA--CTTAGTG-CTGCTGG-CTTAA-CAAGC  44

seq1  CTGTTCAGCAATCACATCGATGCCGCCACCGCCAGAGTCTGTGTTTGTTC  100
       |||||||| |||||||||||| |||||||||||||||| |||||  | |
seq2  TTGTTCAGC-ATCACATCGATG-CGCCACCGCCAGAGTC-GTGTTGTTCC  91

seq1  GGGAGTAAATATTGTCGGTTTTCTTCCTGGTGATAACACACATTC-TCTC  149
      |||||| |||| ||||||||||||||||||||||||||||||||| ||||
seq2  GGGAGT-AATA-TGTCGGTTTTCTTCCTGGTGATAACACACATTCTTCTC  139

seq1  CACCGAGAGAAATGCCAGGCAAACGAATC-AAGAAAGTGTAA-CCATTAT  197
      ||||||||||||||||||||||||||||| |||||||||||| |||||||
seq2  CACCGAGAGAAATGCCAGGCAAACGAATCAAAGAAAGTGTAACCCATTAT  189

seq1  TCTGCTTTTTAC-TTAGTAACAGATTCTCTT-CCTGAGTAGGCCC-TTAC  244
      |||||||||||| |||||||||||||||||| ||||||||||||| ||||
seq2  TCTGCTTTTTACTTTAGTAACAGATTCTCTTCCCTGAGTAGGCCCTTTAC  239

seq1  AAGCTT-CCCAAATACATTCTT-AATA-GGAAAATAACTTTCACCAGGAC  291
      |||||| ||||||||||||||| |||| ||||||||||||||||||||||
seq2  AAGCTTCCCCAAATACATTCTTAAATAGGGAAAATAACTTTCACCAGGAC  289

seq1  AAAACAAGACAAAAAACAACCAAAAAATAAAAAAAAATACATAAATACAT  341
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGAC-AAAAACAACCAAAAAATAAAAAAAAATACATAAATACAT  338

seq1  AAATAAATCCAGGTCCTGAGAATGAAATAACAAATCTGTTTGTACCCAAA  391
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAATAAATCCAGGTCATGAGAATGAAATAACAAATCTGTTTGTACCCAAA  388

seq1  AGTCATTCTCAATGTTTTTGGGGTTCTCAGCTATCTAGGGGGCTGTAGTG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTCTCAATGTTTTTGGGGTTCTCAGCTATCTAGGGGGCTGTAGTG  438

seq1  CTGGATTGAGGCTTCATGAAGGAAAGTGAACACAGCTTCAATGTGTCCAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTGAGGCTTCATGAAGGAAAGTGAACACAGCTTCAATGTGTCCAG  488

seq1  CATTAACACAGTTTCAGAAATTCTCCCATTCATATATTTATGAATAACTA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACACAGTTTCAGAAATTCTCCCATTCATATATTTATGAATAACTA  538

seq1  GAATTTTTTTCCATGAGCAAAATTGCTTTTCTGCTTTTCTTTATGAATGT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTTTCCATGAGCAAAATTGCTTTTCTGCTTTTCTTTATGAATGT  588

seq1  TGACATTCCATATTTAATGTGCGGGCTTTTCTTTCTTTCTCTTTGTTTGT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTCCATATTTAATGTGCGGGCTTTTCTTTCTTTCTCTTTGTTTGT  638

seq1  TTGATTTTTTTGTTGTTTTGTTGTTGTTTACCAGGTTCAATCTGTCCTTA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTTTTGTTGTTTTGTTGTTGTTTACCAGGTTCAATCTGTCCTTA  688

seq1  AAATATTTAAAAAAATTTTTCCCTCTAAATCCTACTATTGAGCTGGCCCT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTAAAAAAATTTTTCCCTCTAAATCCTACTATTGAGCTGGCCCT  738

seq1  CGATCTTTAGCAGGGCAAGTATTGCGTCCTTTTGTCAGACATTTTGAAGT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCTTTAGCAGGGCAAGTATTGCGTCCTTTTGTCAGACATTTTGAAGT  788

seq1  ACCAGTGCTATTAGTTTTGTAGGGAAGGAACTGGTTCTGGCCTTAACACT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGCTATTAGTTTTGTAGGGAAGGAACTGGTTCTGGCCTTAACACT  838

seq1  GGAAGCAGCTCAGGCTCATGGGGAGTGCAAGAAGGTGCCCGTCCTACTGC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAGCTCAGGCTCATGGGGAGTGCAAGAAGGTGCCCGTCCTACTGC  888

seq1  CTGCACTTCACAGAGTGGGCCCTCACGGCTGCTCCGGTTGCCCTTTTTTT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTTCACAGAGTGGGCCCTCACGGCTGCTCCGGTTGCCCTTTTTTT  938

seq1  TTCCTGGCATGGCTTAGGAGCCCATGCTTAACAAAACTAGTGATTCATAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGCATGGCTTAGGAGCCCATGCTTAACAAAACTAGTGATTCATAA  988

seq1  GCACAATTTTCGCTCACACACTTGCAAACAGGGGAAGCATCTACACGTTA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAATTTTCGCTCACACACTTGCAAACAGGGGAAGCATCTACACGTTA  1038

seq1  TGGAATTC  1049
      ||||||||
seq2  TGGAATTC  1046