BAC Information

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BAC

Clone NameB6Ng01-123A22
Chromosome6 (Build37)
Map Location 129,842,596 - 130,009,575
singlet/doubletdoublet
Overlap geneKlra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4
Upstream geneClec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17
Downstream geneLOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779, LOC667793, EG667798, EG625558, LOC625566, EG636947, LOC625628, EG625648
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123A22.bB6Ng01-123A22.g
ACCDH926327DH926328
length1,152301
definitionDH926327|Mus musculus domesticus DNA, BAC clone: B6Ng01-123A22, 5' end.DH926328|Mus musculus domesticus DNA, BAC clone: B6Ng01-123A22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,842,596 - 129,843,697)(130,009,283 - 130,009,575)
sequence
gaattctttgtttacctctgcatcccatttttaatggttatttggttttc
cagagtctaacttcttgaattcttgtatatattcgatattaggtctctat
cagatttagtgttggtaaagatcttttcccaatctgttggttgccttttt
gtcttattgacagtgtcttttgccttacagaagctttacaattttatgag
gtcttatttgacaacacttgatgttatcacatgcacagttggtgttctgt
tcaggatttttttctgctgtgtacttgtatttgagagctttcctcatttt
ctcttctattattttcaacatcccttcatggtaaaaatctttgaaagatt
aggactccaaggtccatacagaaacatagtaaaaacaataaacatcaaat
cagtcaccaacatcaaactaaatggaaagaaacttgaagcaatcccacta
aaatcaggaactagacaaagctgcccactctttctctacctatttaatat
agtacttgaatcccaagccagagcaattagacaacaaaaagagattaaag
ggatacaaattgcactataaactgttaaggatcacaatatacaattgtta
actgtgtagcatgtgcagaattaataaatccccatatatgttttcttaga
gttactagcttgaaaacaaatggtattcatacaccacttcaagttccata
tccccaacatagttagtcacatttaaggataccctcactgagtcttgggt
gtctgccttatctcaggtctctgtctcattctggacactaaaccaaacac
acttatgagggaatggattatttcattttacatgttactactgaatgtta
aaggaatatggaataagaatttaggtgaaggctcaaagaagaaaccacag
ggaactatttttctgacttgaaatatagctcagtttagctattttcattt
ctttcattcttcctttttcataatttatttcactatcacactctctcctc
tctcctattcccagcctcacataccccttccacattaccctttgccattt
tctcagagaaggaaaaccctccatgagtaagaacaaaatattctatagga
ggaggggctgaatggagaaaagaggggccatgggtaagggtgacagtcag
gt
taacccttctgaagatagatgatgaggatgaactggtactgcagactctt
acttggccttttattctcttaggctcagtctctaaccctgaataatgaga
tactgaattcatttatttaaacatttgtatattgttttcctgtaatgtga
acaaaactgtagagactggtttctatagaaacacttcttcttcttcttct
tcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc
ttcttcttcttcttcttcttctacttcttcttcgtcgtcggatcttcttc
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_129842596_129843697
seq2: B6Ng01-123A22.b_112_1199

seq1  TTGAATTCTTGTATATATTCGATATTAGGTCTCTATCAGATTTAGTGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTCTTGTATATATTCGATATTAGGTCTCTATCAGATTTAGTGTTG  50

seq1  GTAAAGATCTTTTCCCAATCTGTTGGTTGCCTTTTTGTCTTATTGACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGATCTTTTCCCAATCTGTTGGTTGCCTTTTTGTCTTATTGACAGT  100

seq1  GTCTTTTGCCTTACAGAAGCTTTACAATTTTATGAGGTCTTATTTGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTGCCTTACAGAAGCTTTACAATTTTATGAGGTCTTATTTGACAA  150

seq1  CACTTGATGTTATCACATGCACAGTTGGTGTTCTGTTCAGGATTTTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGATGTTATCACATGCACAGTTGGTGTTCTGTTCAGGATTTTTTTC  200

seq1  TGCTGTGTACTTGTATTTGAGAGCTTTCCTCATTTTCTCTTCTATTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGTACTTGTATTTGAGAGCTTTCCTCATTTTCTCTTCTATTATTT  250

seq1  TCAACATCCCTTCATGGTAAAAATCTTTGAAAGATTAGGACTCCAAGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATCCCTTCATGGTAAAAATCTTTGAAAGATTAGGACTCCAAGGTC  300

seq1  CATACAGAAACATAGTAAAAACAATAAACATCAAATCAGTCACCAACATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGAAACATAGTAAAAACAATAAACATCAAATCAGTCACCAACATC  350

seq1  AAACTAAATGGAAAGAAACTTGAAGCAATCCCACTAAAATCAGGAACTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAATGGAAAGAAACTTGAAGCAATCCCACTAAAATCAGGAACTAG  400

seq1  ACAAAGCTGCCCACTCTTTCTCTACCTATTTAATATAGTACTTGAATCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCTGCCCACTCTTTCTCTACCTATTTAATATAGTACTTGAATCCC  450

seq1  AAGCCAGAGCAATTAGACAACAAAAAGAGATTAAAGGGATACAAATTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGAGCAATTAGACAACAAAAAGAGATTAAAGGGATACAAATTGCA  500

seq1  CTATAAACTGTTAAGGATCACAATATACAATTGTTAACTGTGTAGCATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAACTGTTAAGGATCACAATATACAATTGTTAACTGTGTAGCATGT  550

seq1  GCAGAATTAATAAATCCCCATATATGTTTTCTTAGAGTTACTAGCTTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATTAATAAATCCCCATATATGTTTTCTTAGAGTTACTAGCTTGAA  600

seq1  AACAAATGGTATTCATACACCACTTCAAGTTCCATATCCCCAACATAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATGGTATTCATACACCACTTCAAGTTCCATATCCCCAACATAGTT  650

seq1  AGTCACATTTAAGGATACCCTCACTGAGTCTTGGGTGTCTGCCTTATCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACATTTAAGGATACCCTCACTGAGTCTTGGGTGTCTGCCTTATCTC  700

seq1  AGGTCTCTGTCTCATTCTGGACACTAAACCAAACACACTTATGAGGGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCTGTCTCATTCTGGACACTAAACCAAACACACTTATGAGGGAAT  750

seq1  GGATTATTTCATTTTACATGTTACTACTGAATGTTAAAGGAATATGGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTATTTCATTTTACATGTTACTACTGAATGTTAAAGGAATATGGAAT  800

seq1  AAGAATTTAGGTGAAGGCTCAAAGAAGAAACCACAGGGGAACTATTTTTC  850
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAGAATTTAGGTGAAGGCTCAAAGAAGAAACCACA-GGGAACTATTTTTC  849

seq1  TGACTTGAAATATAGCTCAGGTTTAGCTATTTTCATTTCTTTCATTTCTT  900
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  TGACTTGAAATATAGCTCA-GTTTAGCTATTTTCATTTCTTTCA-TTCTT  897

seq1  CCTTTTTTCATAATTTATTTCACTATTCACCACTCTCTCCTCTCCTCCTA  950
      || |||||||||||||||||||||| ||| ||||||||||||| ||||||
seq2  CC-TTTTTCATAATTTATTTCACTA-TCA-CACTCTCTCCTCT-CTCCTA  943

seq1  TTCCCAGCCTCACATACCCCTTCCACATTAACCCTTTGCCATTTTCTCAG  1000
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTCCCAGCCTCACATACCCCTTCCACATT-ACCCTTTGCCATTTTCTCAG  992

seq1  AGAAGGGAAAACCCTCCATGAGTAAGAACAAAATAATC-ATAGGAGGGAG  1049
      |||| |||||||||||||||||||||||||||||| || |||||| ||||
seq2  AGAA-GGAAAACCCTCCATGAGTAAGAACAAAATATTCTATAGGA-GGAG  1040

seq1  GGGCTTGGATTGAGAGAGGA-GGGCGATGGGGAAAAAGGGTGACAAGGTC  1098
      |||| || || |||| | || |||| |||||    ||||||||||  |||
seq2  GGGC-TGAATGGAGAAAAGAGGGGCCATGGG---TAAGGGTGACA--GTC  1084

seq1  AGGT  1102
      ||||
seq2  AGGT  1088

seq1: chr6_130009283_130009575
seq2: B6Ng01-123A22.g_78_378 (reverse)

seq1  AGAAGAA--------GAAGAAGAAGAAGAAGAAGTAGAAGAAGAAGAAGA  42
      |||||||        || |||||||||| ||||| |||||||||||||||
seq2  AGAAGAAGATCCGACGACGAAGAAGAAGTAGAAGAAGAAGAAGAAGAAGA  50

seq1  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  92
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  100

seq1  AAGAAGAAGAAGAAGAAGTGTTTCTATAGAAACCAGTCTCTACAGTTTTG  142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAAGAAGAAGTGTTTCTATAGAAACCAGTCTCTACAGTTTTG  150

seq1  TTCACATTACAGGAAAACAATATACAAATGTTTAAATAAATGAATTCAGT  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATTACAGGAAAACAATATACAAATGTTTAAATAAATGAATTCAGT  200

seq1  ATCTCATTATTCAGGGTTAGAGACTGAGCCTAAGAGAATAAAAGGCCAAG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATTATTCAGGGTTAGAGACTGAGCCTAAGAGAATAAAAGGCCAAG  250

seq1  TAAGAGTCTGCAGTACCAGTTCATCCTCATCATCTATCTTCAGAAGGGTT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTCTGCAGTACCAGTTCATCCTCATCATCTATCTTCAGAAGGGTT  300

seq1  A  293
      |
seq2  A  301