BAC Information

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BAC

Clone NameB6Ng01-123B22
Chromosome6 (Build37)
Map Location 6,033,555 - 6,214,761
singlet/doubletdoublet
Overlap geneSlc25a13, EG667462
Upstream genePpp1r9a, Pon1, Pon3, Pon2, Asb4, Pdk4, Dync1i1
Downstream geneEG667468, LOC667471, LOC100040096, Shfm1, LOC545826, Dlx6as, Dlx5, Acn9, EG667500
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123B22.bB6Ng01-123B22.g
ACCDH926375DH926376
length1,1341,071
definitionDH926375|Mus musculus domesticus DNA, BAC clone: B6Ng01-123B22, 5' end.DH926376|Mus musculus domesticus DNA, BAC clone: B6Ng01-123B22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,213,629 - 6,214,761)(6,033,555 - 6,034,657)
sequence
gaattctgcactcttggactcaaataatcaatggtaaaagtatggcatta
tgagaggtcaacttaatatatctttgcaatataaaaacagatttgaggct
aaacatgattaataagtgatttctctattcctacaaaaactagtatagtt
catatagcattttatactggttacagaagataagactttgctcgcctctg
ccctatgcacatctggaaagtgtgttttatgctagaaaatacatccaaag
aggctcattaatcaagagaccacagactcaagggaatgaaaactactggt
ctagtaatggtgggaagggatattctgcattatgtgggtgggccccaagc
aaccagaagtgtctctaaataacaagaagagaaatggaacataaaggcac
ctcggtgaggcagcagagtgataaagacaatgcttttttttacctatctt
taagtgaacttacaattaagtgagacatgatccttcatcacaggaagttt
tcagctctgtggtagaatatgacctgagttgatagtaccaatatgtttct
gtggttacttgaacattaggaagcactggtatcattttccttttggtgct
ataagaaattgccaacattaaatattgcttgatatttatttatttattta
tttatttatttacttacttacttacttacttacttacttattattccttt
ctcatgattgaggattaaaccgagggtcttctgtatgctaagcatctgct
ctgccactgagccacacctcagtcctaaattatcaattaggaggtaggtt
tctctgtatatccctggttgtcctagaacttactctgcagaccaggttgg
cctcaaactcacaaagattctcctgcctctacttcccaagtactggcatt
aaagaagtgcaccaccatcatcccgttcaaatgatcaattcttaaaacag
catccattattatcttctacttctagctgccggaggtttcaatctaatct
tgatagccacagtcagcctcctggcacctcatttcttcacagtcttgctt
ttcttttgtggggtgattctgtcagcccaagatgtccattgaaaatctct
caaagactgtgaagcaaacaaataacatttctat
gaattcttaggctcgatgtatttttccatttactcatcctgacttgatgt
caatggaagcatcaaaataattcgaaggtaggacaagtgtttttactctt
cacagagatcacagatagaaaacagtaacagccatcaagtaacagtcgat
ggcttcagtgaatgtatattgttcagaaacagtcaggtattcaagagaga
ccatcagcagcctcccaggcaatctgataaatgtgaccaattgcaagagt
tcatccaatgccattcactccatgctggctcaggtcccgtatgagaagtc
tcctcacgcgcccacaatcaggaagttctaggtggaaaacaaaacaaaac
caaccccttcgcttacctcttgacattgggacacaatattaagctcaatc
aagaatcacaaatcccactacgctttaagtaaggtgaccattttgtgcta
ggccaattaatagctctcttcagcaacatgtatgtgtgttgcacatgcct
aaaatcccacttattatgtcctgaatcataaaatccaaaatttgtacact
cagttgctaactccacatatgtcaaactacatttcgagggaagtcttttt
ttaaagaggtaattcaaatactaaaaggctatatagggttggccctgctc
tatgactggtatcctcagaaggcattgagacacaaacacagtacactgac
tgagaggacccccatgaggacacagagaggattctgggcattctagagaa
atgcatctggaaagacctcagccttggcctcgcagggtcctgatctgtgg
agagaatacgtaaccgttgtgtatgccacctgacctctggcactttgctc
tggcaaaccgagcttgtgacactggaaccacggacctgaacaccctcaga
cacacgcatataggacttccctccttcagctggggtcgtgagagagcaga
gcagatccttacacttatttgtctgagatgctgactggatgctctagtct
acatttttacacatgcaagcgaaggggtcttacataccatttatcaatca
atttaatttcagcttcatggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_6213629_6214761
seq2: B6Ng01-123B22.b_46_1179 (reverse)

seq1  ATAG-AATGTTA-TTGTTTGCCTTCACAGTCTTTG-GAGATTTTC-ATGG  46
      |||| ||||||| ||||||| |||||||||||||| ||||||||| ||||
seq2  ATAGAAATGTTATTTGTTTG-CTTCACAGTCTTTGAGAGATTTTCAATGG  49

seq1  -CATCTGTGGCTGACCAGATCA-CCCACAAAGGAAAAGCAAGACTGTGGA  94
       |||||  |||||||   |||| |||||||| ||||||||||||||||  
seq2  ACATCTTGGGCTGACAGAATCACCCCACAAAAGAAAAGCAAGACTGTG--  97

seq1  AGGAAATGAGGTTGCCAGGAGGCTGACTGTGGCTTATCAAGATTAGATTG  144
      | ||||||||| ||||||||||||||||||||| ||||||||||||||||
seq2  AAGAAATGAGG-TGCCAGGAGGCTGACTGTGGC-TATCAAGATTAGATTG  145

seq1  AGACCTCCGGCAGCTAGAAGTAGAAGATAATAATTGATGCTGTTTTAAGA  194
      | |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAACCTCCGGCAGCTAGAAGTAGAAGATAATAATGGATGCTGTTTTAAGA  195

seq1  ATTGATCATTTGAACGGGATGATGGTGGTGCACTTCTTTAATGCCAGTAC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATCATTTGAACGGGATGATGGTGGTGCACTTCTTTAATGCCAGTAC  245

seq1  TTGGGAAGTAGAGGCAGGAGAATCTTTGTGAGTTTGAGGCCAACCTGGTC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGTAGAGGCAGGAGAATCTTTGTGAGTTTGAGGCCAACCTGGTC  295

seq1  TGCAGAGTAAGTTCTAGGACAACCAGGGATATACAGAGAAACCTACCTCC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGTAAGTTCTAGGACAACCAGGGATATACAGAGAAACCTACCTCC  345

seq1  TAATTGATAATTTAGGACTGAGGTGTGGCTCAGTGGCAGAGCAGATGCTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGATAATTTAGGACTGAGGTGTGGCTCAGTGGCAGAGCAGATGCTT  395

seq1  AGCATACAGAAGACCCTCGGTTTAATCCTCAATCATGAGAAAGGAATAAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATACAGAAGACCCTCGGTTTAATCCTCAATCATGAGAAAGGAATAAT  445

seq1  AAGTAAGTAAGTAAGTAAGTAAGTAAGTAAATAAATAAATAAATAAATAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGTAAGTAAGTAAGTAAGTAAGTAAATAAATAAATAAATAAATAA  495

seq1  ATAAATATCAAGCAATATTTAATGTTGGCAATTTCTTATAGCACCAAAAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATCAAGCAATATTTAATGTTGGCAATTTCTTATAGCACCAAAAG  545

seq1  GAAAATGATACCAGTGCTTCCTAATGTTCAAGTAACCACAGAAACATATT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGATACCAGTGCTTCCTAATGTTCAAGTAACCACAGAAACATATT  595

seq1  GGTACTATCAACTCAGGTCATATTCTACCACAGAGCTGAAAACTTCCTGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTATCAACTCAGGTCATATTCTACCACAGAGCTGAAAACTTCCTGT  645

seq1  GATGAAGGATCATGTCTCACTTAATTGTAAGTTCACTTAAAGATAGGTAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGGATCATGTCTCACTTAATTGTAAGTTCACTTAAAGATAGGTAA  695

seq1  AAAAAAGCATTGTCTTTATCACTCTGCTGCCTCACCGAGGTGCCTTTATG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGCATTGTCTTTATCACTCTGCTGCCTCACCGAGGTGCCTTTATG  745

seq1  TTCCATTTCTCTTCTTGTTATTTAGAGACACTTCTGGTTGCTTGGGGCCC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTCTCTTCTTGTTATTTAGAGACACTTCTGGTTGCTTGGGGCCC  795

seq1  ACCCACATAATGCAGAATATCCCTTCCCACCATTACTAGACCAGTAGTTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACATAATGCAGAATATCCCTTCCCACCATTACTAGACCAGTAGTTT  845

seq1  TCATTCCCTTGAGTCTGTGGTCTCTTGATTAATGAGCCTCTTTGGATGTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCCTTGAGTCTGTGGTCTCTTGATTAATGAGCCTCTTTGGATGTA  895

seq1  TTTTCTAGCATAAAACACACTTTCCAGATGTGCATAGGGCAGAGGCGAGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGCATAAAACACACTTTCCAGATGTGCATAGGGCAGAGGCGAGC  945

seq1  AAAGTCTTATCTTCTGTAACCAGTATAAAATGCTATATGAACTATACTAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTTATCTTCTGTAACCAGTATAAAATGCTATATGAACTATACTAG  995

seq1  TTTTTGTAGGAATAGAGAAATCACTTATTAATCATGTTTAGCCTCAAATC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTAGGAATAGAGAAATCACTTATTAATCATGTTTAGCCTCAAATC  1045

seq1  TGTTTTTATATTGCAAAGATATATTAAGTTGACCTCTCATAATGCCATAC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTATATTGCAAAGATATATTAAGTTGACCTCTCATAATGCCATAC  1095

seq1  TTTTACCATTGATTATTTGAGTCCAAGAGTGCAGAATTC  1133
      |||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCATTGATTATTTGAGTCCAAGAGTGCAGAATTC  1134

seq1: chr6_6033555_6034657
seq2: B6Ng01-123B22.g_68_1138

seq1  GAATTCTTAGGCTCGATGTATTTTTCCATTTACTCATCCTGACTTGATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGGCTCGATGTATTTTTCCATTTACTCATCCTGACTTGATGT  50

seq1  CAATGGAAGCATCAAAATAATTCGAAGGTAGGACAAGTGTTTTTACTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAAGCATCAAAATAATTCGAAGGTAGGACAAGTGTTTTTACTCTT  100

seq1  CACAGAGATCACAGATAGAAAACAGTAACAGCCATCAAGTAACAGTCGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGATCACAGATAGAAAACAGTAACAGCCATCAAGTAACAGTCGAT  150

seq1  GGCTTCAGTGAATGTATATTGTTCAGAAACAGTCAGGTATTCAAGAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCAGTGAATGTATATTGTTCAGAAACAGTCAGGTATTCAAGAGAGA  200

seq1  CCATCAGCAGCCTCCCAGGCAATCTGATAAATGTGACCAATTGCAAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGCAGCCTCCCAGGCAATCTGATAAATGTGACCAATTGCAAGAGT  250

seq1  TCATCCAATGCCATTCACTCCATGCTGGCTCAGGTCCCGTATGAGAAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCAATGCCATTCACTCCATGCTGGCTCAGGTCCCGTATGAGAAGTC  300

seq1  TCCTCACGCGCCCACAATCAGGAAGTTCTAGGTGGAAAACAAAACAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACGCGCCCACAATCAGGAAGTTCTAGGTGGAAAACAAAACAAAAC  350

seq1  CAACCCCTTCGCTTACCTCTTGACATTGGGACACAATATTAAGCTCAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCTTCGCTTACCTCTTGACATTGGGACACAATATTAAGCTCAATC  400

seq1  AAGAATCACAAATCCCACTACGCTTTAAGTAAGGTGACCATTTTGTGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCACAAATCCCACTACGCTTTAAGTAAGGTGACCATTTTGTGCTA  450

seq1  GGCCAATTAATAGCTCTCTTCAGCAACATGTATGTGTGTTGCACATGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAATTAATAGCTCTCTTCAGCAACATGTATGTGTGTTGCACATGCCT  500

seq1  AAAATCCCACTTATTATGTCCTGAATCATAAAATCCAAAATTTGTACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCCACTTATTATGTCCTGAATCATAAAATCCAAAATTTGTACACT  550

seq1  CAGTTGCTAACTCCACATATGTCAAACTACATTTCGAGGGAAGTCTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCTAACTCCACATATGTCAAACTACATTTCGAGGGAAGTCTTTTT  600

seq1  TTAAAGAGGTAATTCAAATACTAAAAGGCTATATAGGGTTGGCCCTGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAGGTAATTCAAATACTAAAAGGCTATATAGGGTTGGCCCTGCTC  650

seq1  TATGACTGGTATCCTCAGAAGGCATTGAGACACAAACACAGTACACTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTGGTATCCTCAGAAGGCATTGAGACACAAACACAGTACACTGAC  700

seq1  TGAGAGGACCCCCATGAGGACACAGAGAGGATTCTGGGCATTCTAGAGAA  750
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGAGAGGACCCCCATGAGGACACAGAGAGGATTCTGGGCATTCTAGAG-A  749

seq1  AATGCATCTGGAAAGACCTCAGCCTTGGCCTCGCAGGGTCCTGATCTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATCTGGAAAGACCTCAGCCTTGGCCTCGCAGGGTCCTGATCTGTG  799

seq1  GAGAGAATACGTAACCGTTGTGTATGCCACCTGACCTCTGGCACTTTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAATACGTAACCGTTGTGTATGCCACCTGACCTCTGGCACTTTGCT  849

seq1  CTGGCAAACCGAGCTTGTGAACACTGGAACCACGGACCTGAACACCCTCA  900
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTGGCAAACCGAGCTTGTG-ACACTGGAACCACGGACCTGAACACCCTCA  898

seq1  GACACAACGCCATATAGGACTTCCCTCCTTCAGCTGGGGTCGTGAAGAGA  950
      ||||| ||| |||||||||||||||||||||||||||||||||| |||||
seq2  GACAC-ACG-CATATAGGACTTCCCTCCTTCAGCTGGGGTCGTG-AGAGA  945

seq1  GGCAAGAGCAGATCCTTACCACTTATTTGTTCCTGAGATGCTGAACTGGA  1000
      |   |||||||||||||| |||||||||||  ||||||||||| ||||| 
seq2  G--CAGAGCAGATCCTTA-CACTTATTTGT--CTGAGATGCTG-ACTGG-  988

seq1  ATGCTCTAGTCTTAACATTTTTAACCACATGGCAAAGGCGAAAAGGGGTC  1050
      ||||||||||||  |||||||||  ||||| ||||  |||  ||||||| 
seq2  ATGCTCTAGTCT--ACATTTTTA--CACAT-GCAA--GCG--AAGGGGT-  1028

seq1  CTTACATTTACACATTTTATCAACATCAAATTTTATATTTTCAGCTTCAT  1100
      |||||||    ||  |||||||  |||||    | || ||||||||||||
seq2  CTTACAT----ACCATTTATCA--ATCAA----TTTAATTTCAGCTTCAT  1068

seq1  GGG  1103
      |||
seq2  GGG  1071