BAC Information

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BAC

Clone NameB6Ng01-123I21
Chromosome6 (Build37)
Map Location 12,802,593 - 12,868,130
singlet/doubletdoublet
Overlap geneLOC667735
Upstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879, Thsd7a
Downstream geneLOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik, Gpr85, 2610001J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123I21.bB6Ng01-123I21.g
ACCDH926690DH926691
length5501,053
definitionDH926690|Mus musculus domesticus DNA, BAC clone: B6Ng01-123I21, 5' end.DH926691|Mus musculus domesticus DNA, BAC clone: B6Ng01-123I21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,867,576 - 12,868,130)(12,802,593 - 12,803,668)
sequence
acaaggaaaacagctgtccctcaaactagagatgcaaataaatttggatc
atggctgactggccgcaaaattcacagctgtagactcagtctgtgtagaa
aagcacagagtactgctcttggcaaaatacctctactgaatggaaaatat
ttcaccagactcgaaacagcttctgttttgccaatgctcacctcatcaga
agagcaggaagaatctatatctgaacatctctagcctttctctctcagtg
caattgaaaagaaaagccacccacaatacaactcatagaccatattaagc
ttagcaagaaggaaggccaaagtgtagatgcttcattccccatagaaggg
gaaacaaaataatcatgagaggcagaagaaaagagggacctgggtgaaag
aggggaggggaagagaagtgggggcaggatgaggtatgggaagagacaga
gaagttcagagggccaggagaatgaatagaaatatgcagcagtgttgggt
ggagacaggagatggggaaaccactatatagtttcacatgccagggatgg

gaattcactgggcatgcaacatcaaaatccagcatactataggagttaac
agacatttctttttctcagtttcagaagttaggaatcaaggtgaagttgt
cagtaaggtttgtttgcactcctactttcctcatgtatctttttatcccc
aattcttcacatgacaaggcttacacaaatgacctaattttaccgtaact
gcttccttggacattggaggtctgatttctaaatactgttacattgtaaa
gtcttaggagttaggctctaacataaatcttttgaagaaaaaccatcaac
tccataagagttgcaaaataaaaagcagcaaaaataaggaagataatttt
ctatgaaagtacagagaaaggccaggactctgagctgaaggccaccgaca
ctgaagcagaagataattgcaagctcttggactatctgtttacactggct
gtccttatccaaagcaaaagttaactttctcttttcaagataggagacaa
ttcggtaactaaaacattatgaactaaccagtaccccggaacgcttgact
ctagctgcatatgtatcaaaagagaaagaaagagaggcccattggagttg
caaactttatatgccccagtacaggggaacgtcagggccaaaaaaaagtt
ctcattgacgaaatgtcaatttgtttgtgagacattggcaggagtggaaa
tatttccaccataaacagttgccaaacattgctttattctctgtgactcc
acctaccacaaaccattgtttaggcattgatctactcactcttatttaag
cagaatatatagaagccaagcagtgcagaccaattagtgctatttagaca
taatatattgtctgtcagatgctatgagactgagagatatccaggactag
gacttgagatatgatttcaaacacagcatatgaagcaggtctttcaacaa
acaccaccaaaccaaaaacagattactttcagttaaagcctagtaagagg
ataagagcgagaagagagatgatcgaaatattattcaggagtgaggaatg
taa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_12867576_12868130
seq2: B6Ng01-123I21.b_46_601 (reverse)

seq1  CCATCCCTGGCATGTGGAACTTTCTAGTGG-TTCCCCCTCTCCTGTCTCC  49
      |||||||||||||||| |||| | |||||| |||||| ||||||||||||
seq2  CCATCCCTGGCATGTGAAACTATATAGTGGTTTCCCCATCTCCTGTCTCC  50

seq1  ACCCAACACTGCTGCATATTTCTATTCATTCTCCTGGCCCTCTGAACTTC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACACTGCTGCATATTTCTATTCATTCTCCTGGCCCTCTGAACTTC  100

seq1  TCTGTCTCTTCCCATACCTCATCCTGCCCCCACTTCTCTTCCCCTCCCCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTTCCCATACCTCATCCTGCCCCCACTTCTCTTCCCCTCCCCT  150

seq1  CTTTCACCCAGGTCCCTCTTTTCTTCTGCCTCTCATGATTATTTTGTTTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACCCAGGTCCCTCTTTTCTTCTGCCTCTCATGATTATTTTGTTTC  200

seq1  CCCTTCTATGGGGAATGAAGCATCTACACTTTGGCCTTCCTTCTTGCTAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTATGGGGAATGAAGCATCTACACTTTGGCCTTCCTTCTTGCTAA  250

seq1  GCTTAATATGGTCTATGAGTTGTATTGTGGGTGGCTTTTCTTTTCAATTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAATATGGTCTATGAGTTGTATTGTGGGTGGCTTTTCTTTTCAATTG  300

seq1  CACTGAGAGAGAAAGGCTAGAGATGTTCAGATATAGATTCTTCCTGCTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGAGAGAAAGGCTAGAGATGTTCAGATATAGATTCTTCCTGCTCT  350

seq1  TCTGATGAGGTGAGCATTGGCAAAACAGAAGCTGTTTCGAGTCTGGTGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGAGGTGAGCATTGGCAAAACAGAAGCTGTTTCGAGTCTGGTGAA  400

seq1  ATATTTTCCATTCAGTAGAGGTATTTTGCCAAGAGCAGTACTCTGTGCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCCATTCAGTAGAGGTATTTTGCCAAGAGCAGTACTCTGTGCTT  450

seq1  TTCTACACAGACTGAGTCTACAGCTGTGAATTTTGCGGCCAGTCAGCCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACACAGACTGAGTCTACAGCTGTGAATTTTGCGGCCAGTCAGCCAT  500

seq1  GATCCAAATTTATTTGCATCTCTAGTTTGAGGGACAGCTGTTTTCCTTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAAATTTATTTGCATCTCTAGTTTGAGGGACAGCTGTTTTCCTTGT  550

seq1  GAATTC  555
      ||||||
seq2  GAATTC  556

seq1: chr6_12802593_12803668
seq2: B6Ng01-123I21.g_67_1119

seq1  GAATTCACTGGGCATGCAACATCAAAATCCAGCATACTATAGGAGTTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGGCATGCAACATCAAAATCCAGCATACTATAGGAGTTAAC  50

seq1  AGACATTTCTTTTTCTCAGTTTCAGAAGTTAGGAATCAAGGTGAAGTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTCTTTTTCTCAGTTTCAGAAGTTAGGAATCAAGGTGAAGTTGT  100

seq1  CAGTAAGGTTTGTTTGCACTCCTACTTTCCTCATGTATCTTTTTATCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGGTTTGTTTGCACTCCTACTTTCCTCATGTATCTTTTTATCCCC  150

seq1  AATTCTTCACATGACAAGGCTTACACAAATGACCTAATTTTACCGTAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTCACATGACAAGGCTTACACAAATGACCTAATTTTACCGTAACT  200

seq1  GCTTCCTTGGACATTGGAGGTCTGATTTCTAAATACTGTTACATTGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTTGGACATTGGAGGTCTGATTTCTAAATACTGTTACATTGTAAA  250

seq1  GTCTTAGGAGTTAGGCTCTAACATAAATCTTTTGAAGAAAAACCATCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGGAGTTAGGCTCTAACATAAATCTTTTGAAGAAAAACCATCAAC  300

seq1  TCCATAAGAGTTGCAAAATAAAAAGCAGCAAAAATAAGGAAGATAATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAGAGTTGCAAAATAAAAAGCAGCAAAAATAAGGAAGATAATTTT  350

seq1  CTATGAAAGTACAGAGAAAGGCCAGGACTCTGAGCTGAAGGCCACCGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAAAGTACAGAGAAAGGCCAGGACTCTGAGCTGAAGGCCACCGACA  400

seq1  CTGAAGCAGAAGATAATTGCAAGCTCTTGGACTATCTGTTTACACTGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCAGAAGATAATTGCAAGCTCTTGGACTATCTGTTTACACTGGCT  450

seq1  GTCCTTATCCAAAGCAAAAGTTAACTTTCTCTTTTCAAGATAGGAGACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTATCCAAAGCAAAAGTTAACTTTCTCTTTTCAAGATAGGAGACAA  500

seq1  TTCGGTAACTAAAACATTATGAACTAACCAGTACCCCGGAACGCTTGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGTAACTAAAACATTATGAACTAACCAGTACCCCGGAACGCTTGACT  550

seq1  CTAGCTGCATATGTATCAAAAGAGAAAGAAAGAGAGGCCCATTGGAGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGCATATGTATCAAAAGAGAAAGAAAGAGAGGCCCATTGGAGTTG  600

seq1  CAAACTTTATATGCCCCAGTACAGGGGAACGTCAGGGCCAAAAAAAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTTATATGCCCCAGTACAGGGGAACGTCAGGGCCAAAAAAAAGTT  650

seq1  CTCATTGACGAAATGTCAATTTGTTTGTGAGACATTGGCAGGAGTGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGACGAAATGTCAATTTGTTTGTGAGACATTGGCAGGAGTGGAAA  700

seq1  TATTTCCACCATAAACAGTTGCCAAACATTGCTTTATTCTCTGTGACTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCACCATAAACAGTTGCCAAACATTGCTTTATTCTCTGTGACTCC  750

seq1  ACCTACCACAAACCATTGTTTAGGCATTGATCTACTCACTCTTATTTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACCACAAACCATTGTTTAGGCATTGATCTACTCACTCTTATTTAAG  800

seq1  CAGAATATATAGAAGCCAAGCAGTGCAGACCAATTAGTGCTATTTAGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGAATATATAGAAGCCAAGCAGTGCAGACCAATTAGTGCTATTTAGAC-  849

seq1  ATAATATATTTGTCTGTCAGATGCTATGAAGACTGAAGAGATATCCAGGA  900
      |||||||| ||||||||||||||||||| |||||| ||||||||||||||
seq2  ATAATATA-TTGTCTGTCAGATGCTATG-AGACTG-AGAGATATCCAGGA  896

seq1  CTAGGACTTGAAGATATGAATTCAAAACACAGCAATATGAAGCAGGGTCT  950
      |||||||||| |||||||| ||| ||||||||| |||||||||| |||||
seq2  CTAGGACTTG-AGATATGATTTC-AAACACAGC-ATATGAAGCA-GGTCT  942

seq1  TTCAAACAAACACCACCAAAACCAAAAACAGGATTACTTTCAAGTTAAAG  1000
      ||| ||||||||||||| |||||||||||| |||||||||| ||||||||
seq2  TTC-AACAAACACCACC-AAACCAAAAACA-GATTACTTTC-AGTTAAAG  988

seq1  CCTAGTAAAGAGGGATAAGAAGCAGAGAAGAGAGGATGATCAGAAATATA  1050
      |||||| |||| ||||||| ||| ||||||||| ||||||| ||||||| 
seq2  CCTAGT-AAGA-GGATAAG-AGC-GAGAAGAGA-GATGATC-GAAATATT  1032

seq1  ATTCAAAGGAGAGTGAGGAATAGTAA  1076
      |||||     ||||||||||| ||||
seq2  ATTCA----GGAGTGAGGAAT-GTAA  1053