BAC Information

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BAC

Clone NameB6Ng01-123J20
Chromosome6 (Build37)2 (Build37)
Map Location 18,835,442 - 18,835,968123,545,075 - 123,546,247
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123J20.bB6Ng01-123J20.g
ACCDH926732DH926733
length8131,144
definitionDH926732|Mus musculus domesticus DNA, BAC clone: B6Ng01-123J20, 5' end.DH926733|Mus musculus domesticus DNA, BAC clone: B6Ng01-123J20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,442 - 18,835,968)(123,545,075 - 123,546,247)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttgtttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttatcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccagac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattctgccagaagttcttt
tatccttgagaagactttttgctatcgtaggtttttgttattccagacaa
atttgcaaattgctccttccaattcgttgaagaattgagttggaattttg
atggggattgcattgatctgtagatgcttttggcagatagccattttaca
tgtgatcctgcca
gaattccagcatgaagtgatttgtagaaaatagtacataatatatacatg
catgcatacagacatgcatgcatatacacataatacataatatatttatg
catatagagatggattagtggaaagcacacttgctgttctttcaaaggat
ctaagtttgagttccaagatccatgtcaggatgcttacaatctcctataa
ttccagtttgaggatattcaatgctgtcttccaattactacaaggggaaa
tatacacacatgctcctaaagacacagagagacacatggacacacaaata
aataataaaatgcattttaaattctctgatgaaccaaattatatctgaaa
aacacaaaaaattctcaaaattaaaaaatttcagtaaaaaagcaatttaa
caataagcaagaatcctatataggctcttaccaccaccaccaccaccacc
accaccaccaccaccaccaccccgcaaaaatatatagatataagtaaatt
caagtgtgagtagcaccatttgtcaataagaaactgaaaagcaatacatg
gtatgtatatgaagtccaacaacctaacagtatcaaatatagacaaggat
acagagtacctgactctcactggttagttaggcaggaaatattttattta
cagttagatagaaataatgttttataaaaaagatgtcttgatttgacaaa
gcaatggtttgttttctccccacattagacaaaatggagtatagcagatg
cagtgtggtttgggagtacatggtggcgaaccaaggctatgaaaaacact
tgtacctatctttcatggttgccttctgatcccagagaaagaaggtcatc
tttaaaggttgtgcagccacattgtcaggggaacaggctacatgcacagg
attcttggaagtttcttgctttgttcactatgtaaagtagtagtaaggaa
gaaggggaagtggggtgcctctgacttgtagctgctgcgccaatctagca
tcatgccttgagctggaacccatgcaccacctaaaaactgattgcaactg
tgtacagagatgatccatatccagattcaggtcaaattgtctgtcactgt
gttagctgtagaaccccatgacctaggtactcttattcagaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835442_18835968
seq2: B6Ng01-123J20.b_44_571 (reverse)

seq1  CCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50

seq1  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100

seq1  ACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCT  150
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  ACAACTGGTTGTTATCGTGTAGAAGAATGCGAATCGATCCATACTTATCT  150

seq1  CCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  AGAGACACTGAAACTTATAGAGGAGAAAGTCTGGAAAAGCCTTGAAGATA  250

seq1  TGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTG  299
      |||||| ||||||||| ||||||||||||||||||||||| |||||||| 
seq2  TGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  300

seq1  AGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  349
      || | |||||| || |||||||||||||||||||||||||||||||||||
seq2  AGATCGAGAATTGATAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  350

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  400

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  450

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAA  499
      ||| |||||||||||||||||| |||||||||||||||||||||||| ||
seq2  AAACAACTCAAGAAGGTGGACTCCAGAAAATCAAATAACCCCATTAAAAA  500

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  527
      ||||||||||||||||||||||||||||
seq2  ATGGGGCTCAGAACTGAACAAAGAATTC  528

seq1: chr2_123545075_123546247
seq2: B6Ng01-123J20.g_67_1210 (reverse)

seq1  ACTTCTGATTCAACACTTTCCTTGATAAGAGTTACCTTGGTCATGGTGTC  50
      ||||||||                ||||||| ||||| |||||||| || 
seq2  ACTTCTGA----------------ATAAGAG-TACCTAGGTCATGGGGT-  32

seq1  TCTTCACAGCTACAACAGTGACTAAGACAATTTTGAACACTGAAATCTTG  100
      |||  |||||||  ||||||||  |||||| |||||   ||| ||||| |
seq2  TCT--ACAGCTAACACAGTGAC--AGACAA-TTTGA--CCTG-AATCTGG  74

seq1  ATAT-GATCAATCTCTGT-CACAGTTGCAATCAGTTTTTAGTTGTGCCAT  148
      |||| |||| |||||||| |||||||||||||||||||||| ||   |||
seq2  ATATGGATC-ATCTCTGTACACAGTTGCAATCAGTTTTTAGGTGGTGCAT  123

seq1  GTGTTCCAGCTCAAAGCCATGATGCTAGATT-GCGCAGCAGCTACAAGTC  197
      | |||||||||| ||| |||||||||||||| ||||||||||||||||||
seq2  GGGTTCCAGCTC-AAGGCATGATGCTAGATTGGCGCAGCAGCTACAAGTC  172

seq1  AGA-GCA-CCCACTTCCCCCTTCTTCCTTACTACTAACTTTACATAGTGA  245
      ||| ||| ||||||| ||||||||||||||||||| ||||||||||||||
seq2  AGAGGCACCCCACTT-CCCCTTCTTCCTTACTACT-ACTTTACATAGTGA  220

seq1  ACAAAGCAAGAAACTTCCAAGAATTCCTTGTGCATGTAGCCTGTTCCCCT  295
      ||||||||||||||||||||||||  | ||||||||||||||||||||| 
seq2  ACAAAGCAAGAAACTTCCAAGAAT--CCTGTGCATGTAGCCTGTTCCCC-  267

seq1  TGACAATGTTGGCTGCACAACCTTTTAAAGATGACCTTCTTTCTCTGGGA  345
      |||||||| ||||||||||||| |||||||||||||||||||||||||||
seq2  TGACAATG-TGGCTGCACAACC-TTTAAAGATGACCTTCTTTCTCTGGGA  315

seq1  TCAGAAGGCAACCATGAAAGATAGGTACAAGTGTTTATCATAGCCTTGGT  395
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCAGAAGGCAACCATGAAAGATAGGTACAAGTGTTTTTCATAGCCTTGGT  365

seq1  TCGCCACCATGTACTCCCAAACCACACTGCATCTGCTATACTCCATTTTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCACCATGTACTCCCAAACCACACTGCATCTGCTATACTCCATTTTG  415

seq1  TCTAATGTGGGGAGAAAACAAACCATTGCTTTGTCAAATCAAGACATCTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGTGGGGAGAAAACAAACCATTGCTTTGTCAAATCAAGACATCTT  465

seq1  TTTTATAAAACATTA-TTCTATCTAACTGTAAATAAAATATTTCCTGCCT  544
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTTATAAAACATTATTTCTATCTAACTGTAAATAAAATATTTCCTGCCT  515

seq1  AACTAACCAGTGAGAGTCAGGTACTCTGTATCCTTGTCTATATTTGATAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACCAGTGAGAGTCAGGTACTCTGTATCCTTGTCTATATTTGATAC  565

seq1  TGTTAGGTTGTTGGACTTCATATACATACCATGTATTGCTTTTCAGTTTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGTTGTTGGACTTCATATACATACCATGTATTGCTTTTCAGTTTC  615

seq1  TTATTGACAAATGGTGCTACTCACACTTGAATTTACTTATATCTATATAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGACAAATGGTGCTACTCACACTTGAATTTACTTATATCTATATAT  665

seq1  TTTTGCGGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCGGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGT  715

seq1  AAGAGCCTATATAGGATTCTTGCTTATTGTTAAATTGCTTTTTTACTGAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCTATATAGGATTCTTGCTTATTGTTAAATTGCTTTTTTACTGAA  765

seq1  ATTTTTTAATTTTGAGAATTTTTTGTGTTTTTCAGATATAATTTGGTTCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAATTTTGAGAATTTTTTGTGTTTTTCAGATATAATTTGGTTCA  815

seq1  TCAGAGAATTTAAAATGCATTTTATTATTTATTTGTGTGTCCATGTGTCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAATTTAAAATGCATTTTATTATTTATTTGTGTGTCCATGTGTCT  865

seq1  CTCTGTGTCTTTAGGAGCATGTGTGTATATTTCCCCTTGTAGTAATTGGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTCTTTAGGAGCATGTGTGTATATTTCCCCTTGTAGTAATTGGA  915

seq1  AGACAGCATTGAATATCCTCAAACTGGAATTATAGGAGATTGTAAGCATC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCATTGAATATCCTCAAACTGGAATTATAGGAGATTGTAAGCATC  965

seq1  CTGACATGGATCTTGGAACTCAAACTTAGATCCTTTGAAAGAACAGCAAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATGGATCTTGGAACTCAAACTTAGATCCTTTGAAAGAACAGCAAG  1015

seq1  TGTGCTTTCCACTAATCCATCTCTATATGCATAAATATATTATGTATTAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTTCCACTAATCCATCTCTATATGCATAAATATATTATGTATTAT  1065

seq1  GTGTATATGCATGCATGTCTGTATGCATGCATGTATATATTATGTACTAT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATATGCATGCATGTCTGTATGCATGCATGTATATATTATGTACTAT  1115

seq1  TTTCTACAAATCACTTCATGCTGGAATTC  1173
      |||||||||||||||||||||||||||||
seq2  TTTCTACAAATCACTTCATGCTGGAATTC  1144