BAC Information

Click to search

BAC

Clone NameB6Ng01-124F23
Chromosome6 (Build37)
Map Location 91,484,739 - 91,588,247
singlet/doubletdoublet
Overlap genenone
Upstream geneAldh1l1, Slc41a3, Iqsec1, LOC100043646, EG665685, Nup210, Hdac11, Fbln2, LOC665716, Wnt7a, LOC100043659, LOC625420, Chchd4, Tmem43, Xpc, Lsm3
Downstream geneSlc6a6, Grip2, C130022K22Rik, 4930590J08Rik, Fgd5, Nr2c2, Mrps25, Zfyve20, Trh, LOC665805, Prickle2, LOC545866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124F23.bB6Ng01-124F23.g
ACCDH927298DH927299
length1,134766
definitionDH927298|Mus musculus domesticus DNA, BAC clone: B6Ng01-124F23, 5' end.DH927299|Mus musculus domesticus DNA, BAC clone: B6Ng01-124F23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,587,073 - 91,588,247)(91,484,739 - 91,485,499)
sequence
gaattcagtaagaaaacaccaacgggtctccctccacccccacctcccac
acacactcagacttagccctgccggaggggctttgcaaggggccatttgg
gctagaaggagctgagaaccccagcagcccaggctccgtttttttgttgt
tctttgtctttggaagtacctggatagaaccctggagcatgatgggcaaa
tagaccccacactgagctgcaccccagtcccaaacccagccaagcgatat
gggggcagattagcctggaggtactcccttcgggcatgcctgtggtttgg
gggctttgaaggcagactctagctgtatttttggctctgagaggaaaccc
actcagcaaccttaggggtgtaggaaaagtcctaactgggggatactcag
gccagcacacttttgttattcttctcagaagcctattttttttttctaac
aaggtccaggaagctcatacagcaaatgattatcttaaccattttgaaaa
tcagattcggtgaaatatgaatccgattccagcagtaggaaggtggaggc
aggaggattacaagttgaagctcattcttagatacatagtaaattagagg
ccaacctgggagacatgagaccctgactcaaaaaaaaaagaaaagaaaag
aaaggaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga
aagaaagaaagagaaacaagcaagtaaatagcccagatgagagcctgggc
taacccagagctggcgtggtctgagactattgaatgaaccatatgaggaa
acatgccaactaggtggtcagagtcttgtgctgtaccccccagatccctg
tagggcttcatggagacaggagagctgtctcagcccagagctaagtctag
accaggcaagggaagtctaggtggcttcagccattgatatggatagagtg
cgacctacacgtcacgggcccacttatttcacaggcaaggctcagctgcc
aagtggtgttaagctgccctcattctaacccagtcagagccagggattaa
accttggattgggccagtgctagggaagtactagtcctgtgctccctcct
ctaacccttcccttctggtggctccacccagccc
gaattccagtggcctatgagatcattctggctatagatttcagccacagg
aggcctcatcgatgtatggtggatgaacccgtatatgaaacccatatatg
agcacagtggtagactatgaggatattgatatgagtgtggtaacatctgt
aatcccagcattcaggaggatgctaagcagaaggctgccatgagtttgag
gctagcctaggctacagagtaagactctgtaagtctcaaaaaaaaaagtg
tgaaaaagagaaaagaaggtggatctatttgttctttttccatgggcatt
tttaatctctgccagattaagatagtacagaatgtgccacacacaggcgt
caatcacattttttttttatgattgatcataagggttgctaaggaattaa
ttagttttctctctggcatgtgcaagaaaatgactgtttagttcattctg
cttcttacctttctcagggacaatgtgggattagttttctgcgtctagag
tctccacagaaactttattaataggctttttgcattttggtgctaccaga
cgggaaacctaaagagtttcaaaataaagaaaagtatgtaaagtaagtct
aggacagcccaggcacactgcagcaactgcccagcacaaccagacaaggg
cagacccatttcagctcagaactgcccaatcttgcttctgagtcattgac
tggttgttgaccaaagctctgctctctgtccacatggggactctcatttc
tacaaagtgggccttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_91587073_91588247
seq2: B6Ng01-124F23.b_46_1179 (reverse)

seq1  GGGCTGGGTGGGTGCTGGGAGAAGCAGAGATGCTACAGTTGGCTGGTTGG  50
                                              |||||| |||
seq2  ---------------------------------------GGGCTGGGTGG  11

seq1  AGCAACAGGAAAGGGGAGGGT--GAGGAGGGAG-ACAGGGCTTAGTACTT  97
      ||| ||  | ||||| |||||  |||||||||| ||||| | |||||| |
seq2  AGCCACCAG-AAGGGAAGGGTTAGAGGAGGGAGCACAGGAC-TAGTAC-T  58

seq1  TCCCTAGCACTGGCCC-ATC--AAGTTTAATCCCTTGCTCTGGCTTGGGT  144
      |||||||||||||||| |||  | ||||||||||| |||||| | |||||
seq2  TCCCTAGCACTGGCCCAATCCAAGGTTTAATCCCTGGCTCTGAC-TGGGT  107

seq1  TAGAATGAGG--CGCTTAAACACCACTTGGCAGCTGAGCCTTGCCTGTGA  192
      ||||||||||   |||| ||||||||||||||||||||||||||||||||
seq2  TAGAATGAGGGCAGCTT-AACACCACTTGGCAGCTGAGCCTTGCCTGTGA  156

seq1  AATTAGTGGGGCCCGTGGACGTTGTAGGTCGGCACTCTATCCATATCAAT  242
      ||| ||| |||||||| |||| |||||||| |||||||||||||||||||
seq2  AATAAGT-GGGCCCGT-GACG-TGTAGGTC-GCACTCTATCCATATCAAT  202

seq1  GGCTGAAGCCACCTAGACTTCCCTTGCCTGGTCTAGACTTAGCTCTGGGC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAAGCCACCTAGACTTCCCTTGCCTGGTCTAGACTTAGCTCTGGGC  252

seq1  TGGAGACAGCTCTCCTGTCTCCATGAAGCCCTACAGGGATCTGGGGGGTA  342
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-GAGACAGCTCTCCTGTCTCCATGAAGCCCTACAGGGATCTGGGGGGTA  301

seq1  CAGCACAAGACTCTGACCACCTAGTTGGCATGTTTCCTCATATGGTTCAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAAGACTCTGACCACCTAGTTGGCATGTTTCCTCATATGGTTCAT  351

seq1  TCAATAGTCTCAGACCACGCCAGCTCTGGGTTAGCCCAGGCTCTCATCTG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAGTCTCAGACCACGCCAGCTCTGGGTTAGCCCAGGCTCTCATCTG  401

seq1  GGCTATTTACTTGCTTGTTTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTTACTTGCTTGTTTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  451

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTTCTTTTCTTTTCTTTTTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTTCTTTTCTTTTCTTTTTT  501

seq1  TTTTGAGTCAGGGTCTCATGTCTCCCAGGTTGGCCTCTAATTTACTATGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGTCAGGGTCTCATGTCTCCCAGGTTGGCCTCTAATTTACTATGT  551

seq1  ATCTAAGAATGAGCTTCAACTTGTAATCCTCCTGCCTCCACCTTCCTACT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGAATGAGCTTCAACTTGTAATCCTCCTGCCTCCACCTTCCTACT  601

seq1  GCTGGAATCGGATTCATATTTCACCGAATCTGATTTTCAAAATGGTTAAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAATCGGATTCATATTTCACCGAATCTGATTTTCAAAATGGTTAAG  651

seq1  ATAATCATTTGCTGTATGAGCTTCCTGGACCTTGTTAGAAAAAAAAAATA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCATTTGCTGTATGAGCTTCCTGGACCTTGTTAGAAAAAAAAAATA  701

seq1  GGCTTCTGAGAAGAATAACAAAAGTGTGCTGGCCTGAGTATCCCCCAGTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTGAGAAGAATAACAAAAGTGTGCTGGCCTGAGTATCCCCCAGTT  751

seq1  AGGACTTTTCCTACACCCCTAAGGTTGCTGAGTGGGTTTCCTCTCAGAGC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTTTCCTACACCCCTAAGGTTGCTGAGTGGGTTTCCTCTCAGAGC  801

seq1  CAAAAATACAGCTAGAGTCTGCCTTCAAAGCCCCCAAACCACAGGCATGC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATACAGCTAGAGTCTGCCTTCAAAGCCCCCAAACCACAGGCATGC  851

seq1  CCGAAGGGAGTACCTCCAGGCTAATCTGCCCCCATATCGCTTGGCTGGGT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAGGGAGTACCTCCAGGCTAATCTGCCCCCATATCGCTTGGCTGGGT  901

seq1  TTGGGACTGGGGTGCAGCTCAGTGTGGGGTCTATTTGCCCATCATGCTCC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACTGGGGTGCAGCTCAGTGTGGGGTCTATTTGCCCATCATGCTCC  951

seq1  AGGGTTCTATCCAGGTACTTCCAAAGACAAAGAACAACAAAAAAACGGAG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTCTATCCAGGTACTTCCAAAGACAAAGAACAACAAAAAAACGGAG  1001

seq1  CCTGGGCTGCTGGGGTTCTCAGCTCCTTCTAGCCCAAATGGCCCCTTGCA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCTGCTGGGGTTCTCAGCTCCTTCTAGCCCAAATGGCCCCTTGCA  1051

seq1  AAGCCCCTCCGGCAGGGCTAAGTCTGAGTGTGTGTGGGAGGTGGGGGTGG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCTCCGGCAGGGCTAAGTCTGAGTGTGTGTGGGAGGTGGGGGTGG  1101

seq1  AGGGAGACCCGTTGGTGTTTTCTTACTGAATTC  1175
      |||||||||||||||||||||||||||||||||
seq2  AGGGAGACCCGTTGGTGTTTTCTTACTGAATTC  1134

seq1: chr6_91484739_91485499
seq2: B6Ng01-124F23.g_72_837

seq1  GAATTCCAGTGGCCTATGAGATCATTCTGGCTATAGATTTCAGCCACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGGCCTATGAGATCATTCTGGCTATAGATTTCAGCCACAGG  50

seq1  AGGCCTCATCGATGTATGGTGGATGAACCCGTATATGAAACCCATATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCATCGATGTATGGTGGATGAACCCGTATATGAAACCCATATATG  100

seq1  AGCACAGTGGTAGACTATGAGGATATTGATATGAGTGTGGTAACATCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGTGGTAGACTATGAGGATATTGATATGAGTGTGGTAACATCTGT  150

seq1  AATCCCAGCATTCAGGAGGATGCTAAGCAGAAGGCTGCCATGAGTTTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCATTCAGGAGGATGCTAAGCAGAAGGCTGCCATGAGTTTGAG  200

seq1  GCTAGCCTAGGCTACAGAGTAAGACTCTGTAAGTCTCAAAAAAAAAAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCCTAGGCTACAGAGTAAGACTCTGTAAGTCTCAAAAAAAAAAGTG  250

seq1  TGAAAAAGAGAAAAGAAGGTGGATCTATTTGTTCTTTTTCCATGGGCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAGAGAAAAGAAGGTGGATCTATTTGTTCTTTTTCCATGGGCATT  300

seq1  TTTAATCTCTGCCAGATTAAGATAGTACAGAATGTGCCACACACAGGCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCTCTGCCAGATTAAGATAGTACAGAATGTGCCACACACAGGCGT  350

seq1  CAATCACA-TTTTTTTTTATGATTGATCATAAGGGTTGCTAAGGAATTAA  399
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAATCACATTTTTTTTTTATGATTGATCATAAGGGTTGCTAAGGAATTAA  400

seq1  TTAGTTTTCTCTCTGGCATGTGCAAGAAAATGACTG-TTAGTTCATTCTG  448
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTAGTTTTCTCTCTGGCATGTGCAAGAAAATGACTGTTTAGTTCATTCTG  450

seq1  CTTCTTACCTTTCTCAGGGACAATGTGGGATTAGTTTTCTGCGTCTAGAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTACCTTTCTCAGGGACAATGTGGGATTAGTTTTCTGCGTCTAGAG  500

seq1  TCTCCACAG-AACTTTATTAATAGGCTTTTTGCATTTTGGTGCTACCAGA  547
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACAGAAACTTTATTAATAGGCTTTTTGCATTTTGGTGCTACCAGA  550

seq1  CGGGAAACCTAAAGAGTTTCAAAATAAAGAAAAGTATGT-AAGTAAGTCT  596
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CGGGAAACCTAAAGAGTTTCAAAATAAAGAAAAGTATGTAAAGTAAGTCT  600

seq1  AGGACAGCCCAGGCACACTGCAGCAACTGCCCAGCACAACCAGACAAGGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGCCCAGGCACACTGCAGCAACTGCCCAGCACAACCAGACAAGGG  650

seq1  CAGACCCATTTCAGCTCAGAACTGCCCAATCTGGC-TCTGAGTCATTGAC  695
      |||||||||||||||||||||||||||||||| || ||||||||||||||
seq2  CAGACCCATTTCAGCTCAGAACTGCCCAATCTTGCTTCTGAGTCATTGAC  700

seq1  TGGCTGTTGACCAAAGCTCTGCTCTCTTGTCCACATGGGGACTCTCATTT  745
      ||| |||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGGTTGTTGACCAAAGCTCTGCTCTC-TGTCCACATGGGGACTCTCATTT  749

seq1  CTACAAAGT-GGCCTTC  761
      ||||||||| |||||||
seq2  CTACAAAGTGGGCCTTC  766