BAC Information

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BAC

Clone NameB6Ng01-124H07
Chromosome6 (Build37)
Map Location 8,308,511 - 8,472,561
singlet/doubletdoublet
Overlap geneLOC100036521, LOC667028, A430035B10Rik, Glcci1
Upstream geneTac1, LOC667511, Asns, EG667529, C1galt1, LOC100040661, Col28a1, BC020002, Rpa3
Downstream geneIca1, LOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124H07.bB6Ng01-124H07.g
ACCDH927360DH927361
length1,107609
definitionDH927360|Mus musculus domesticus DNA, BAC clone: B6Ng01-124H07, 5' end.DH927361|Mus musculus domesticus DNA, BAC clone: B6Ng01-124H07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,308,511 - 8,309,619)(8,471,953 - 8,472,561)
sequence
gaattctctccacgtttgttttcagatattattattccctgtatctttct
tctggctctttctaatgattcatttcttttatcatttgtttgtttgtatg
catataatatgtagatgtccatgaaatattgtcttatttttatcttctca
aagaaaatgtgtatatatgttttaatatactctgttgcatataaaataaa
aatgaaattttcatcagttcaatttacctttatataccttatattgatgt
ttcccttaatatgtaaaactttaaaatgtattatttcattatttcctctg
taattattttaaattgtatgttctttctttaaaggtcggttgctttaagt
acctagaaacttgaaccacaaatttaatcagaaaataatactttaatcct
agctaatccacattattgaccttctgtgcctgcagcaacaacaatagctg
aatgtctcctgtataatctcttgtgtagacccacagactcactggcaaag
gctgtgccagagattaactgccctcctttgagatggtagtttgctgattt
ttaggaggagactttagagggtctcgtttaatcctttcaaagacaagctg
tttgtatccatcttgtctaatttgtaaaatgaaactaggtcagatcaatt
atagatagctgtgtcttgctctgagtggccttcttgccaagaagattatt
aaaatacaaattttgctggtcaaaaaaaaattactgtccctgctgaaaat
agaatgggaatataatagctcgatggtgctctacttccatattatcttca
tagtatagaagactcaaacagagaaacacaactcaagtatgtgtgcatac
atgcagacactttaaaagcacgtgcacatacatgcacattttaaaacatt
ctttgactttatgctttgtggaagaggtgagatgtataaagacaagcact
catagtgggacatgacccatctgagaggcacattcttgagaaccagagct
gtgctcagctgtatttagaattgaagttggtggggttaaaaggacgatag
cttatgaagctgaggggtgacgaaatgatgtaggatcttattcttcctat
acttgaa

gaattctgagacagaacaacatacggacagaagggagaaatgagttagaa
ggaaaggcaagctttatgctggtacaaaacaaatcatcattatgatcatc
gtcaccaccaccaccactaccacccagtactctaggtttaccatgactgt
gttccacagtgccaacaaagaaaccatttctacatcaagtccttgacttt
aaaacttgaatcactcaacattctgatcttgataactgttcttctaaatt
atatctctgtacaaatgaatcattaaaagatgattcaaacttgaaactac
agttaaatacttataaaattattttattctcttagtaccacaaaacaatt
ctagtccactttttcaaagcatgtatcctgaacaattaatttccacccta
aaagagtgtagtgtactctactttgtgaaaacataggtccaagaaaaaag
gtactaacaaacttcccaaagacagttctatttaaaaatatttagatttt
taagtttacagaatatagggaggtcagtattacctatgagaataattact
ctgctccacagaaatgccacacttgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_8308511_8309619
seq2: B6Ng01-124H07.b_45_1151

seq1  GAATTCTCTCCACGTTTGTTTTCAGATATTATTATTCCCTGTATCTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCACGTTTGTTTTCAGATATTATTATTCCCTGTATCTTTCT  50

seq1  TCTGGCTCTTTCTAATGATTCATTTCTTTTATCATTTGTTTGTTTGTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTCTTTCTAATGATTCATTTCTTTTATCATTTGTTTGTTTGTATG  100

seq1  CATATAATATGTAGATGTCCATGAAATATTGTCTTATTTTTATCTTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAATATGTAGATGTCCATGAAATATTGTCTTATTTTTATCTTCTCA  150

seq1  AAGAAAATGTGTATATATGTTTTAATATACTCTGTTGCATATAAAATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATGTGTATATATGTTTTAATATACTCTGTTGCATATAAAATAAA  200

seq1  AATGAAATTTTCATCAGTTCAATTTACCTTTATATACCTTATATTGATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATTTTCATCAGTTCAATTTACCTTTATATACCTTATATTGATGT  250

seq1  TTCCCTTAATATGTAAAACTTTAAAATGTATTATTTCATTATTTCCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTAATATGTAAAACTTTAAAATGTATTATTTCATTATTTCCTCTG  300

seq1  TAATTATTTTAAATTGTATGTTCTTTCTTTAAAGGTCGGTTGCTTTAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTTTAAATTGTATGTTCTTTCTTTAAAGGTCGGTTGCTTTAAGT  350

seq1  ACCTAGAAACTTGAACCACAAATTTAATCAGAAAATAATACTTTAATCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGAAACTTGAACCACAAATTTAATCAGAAAATAATACTTTAATCCT  400

seq1  AGCTAATCCACATTATTGACCTTCTGTGCCTGCAGCAACAACAATAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATCCACATTATTGACCTTCTGTGCCTGCAGCAACAACAATAGCTG  450

seq1  AATGTCTCCTGTATAATCTCTTGTGTAGACCCACAGACTCACTGGCAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTCCTGTATAATCTCTTGTGTAGACCCACAGACTCACTGGCAAAG  500

seq1  GCTGTGCCAGAGATTAACTGCCCTCCTTTGAGATGGTAGTTTGCTGATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCCAGAGATTAACTGCCCTCCTTTGAGATGGTAGTTTGCTGATTT  550

seq1  TTAGGAGGAGACTTTAGAGGGTCTCGTTTAATCCTTTCAAAGACAAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGGAGACTTTAGAGGGTCTCGTTTAATCCTTTCAAAGACAAGCTG  600

seq1  TTTGTATCCATCTTGTCTAATTTGTAAAATGAAACTAGGTCAGATCAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATCCATCTTGTCTAATTTGTAAAATGAAACTAGGTCAGATCAATT  650

seq1  ATAGATAGCTGTGTCTTGCTCTGAGTGGCCTTCTTGCCAAGAAGATTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAGCTGTGTCTTGCTCTGAGTGGCCTTCTTGCCAAGAAGATTATT  700

seq1  AAAATACAAATTTTGCTGGTCAAAAAAAAATTACTGTCCCTGCTGAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACAAATTTTGCTGGTCAAAAAAAAATTACTGTCCCTGCTGAAAAT  750

seq1  AGAATGGGAATATAATAGCTCGATGGTGCTCTACTTCCATATTATCTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGGAATATAATAGCTCGATGGTGCTCTACTTCCATATTATCTTCA  800

seq1  TAGTATAGAAGACTCAAACAGAGAAACACAACTCAAGTATGTGTGCATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATAGAAGACTCAAACAGAGAAACACAACTCAAGTATGTGTGCATAC  850

seq1  ATGCAGACAC-TTAAAAGCACGTGCACATACATGCACATTTTAAAACATT  899
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGACACTTTAAAAGCACGTGCACATACATGCACATTTTAAAACATT  900

seq1  CTTTGACTTTATGCTTTGTGGAAGAGGTGAGATGTTATAAAGACAAGCAC  949
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTTTGACTTTATGCTTTGTGGAAGAGGTGAGATG-TATAAAGACAAGCAC  949

seq1  TCATAGTGGGACATGACCCATCTGAGAGGCAACATTCTTGAGAAACAGAG  999
      |||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  TCATAGTGGGACATGACCCATCTGAGAGGC-ACATTCTTGAGAACCAGAG  998

seq1  CTGTGCTCAGGCTGGAATATAGAATTGAAGTTGGTGGGGTTAAAAGGACG  1049
      ||||||||| ||| | || |||||||||||||||||||||||||||||||
seq2  CTGTGCTCA-GCT-GTATTTAGAATTGAAGTTGGTGGGGTTAAAAGGACG  1046

seq1  ATAGC-TATGAAGCTGAGGGGTGACAGAAATGAGTGAGGATCATATTC-T  1097
      ||||| ||||||||||||||||||| |||||||   |||||| ||||| |
seq2  ATAGCTTATGAAGCTGAGGGGTGAC-GAAATGATGTAGGATCTTATTCTT  1095

seq1  CCTAGACTTGAA  1109
      |||| |||||||
seq2  CCTATACTTGAA  1107


seq1: chr6_8471953_8472561
seq2: B6Ng01-124H07.g_66_674 (reverse)

seq1  CACACACACACACACACACACACACACACACACACAAGTGTGGCATTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACAAGTGTGGCATTTCT  50

seq1  GTGGAGCAGAGTAATTATTCTCATAGGTAATACTGACCTCCCTATATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGCAGAGTAATTATTCTCATAGGTAATACTGACCTCCCTATATTCT  100

seq1  GTAAACTTAAAAATCTAAATATTTTTAAATAGAACTGTCTTTGGGAAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTTAAAAATCTAAATATTTTTAAATAGAACTGTCTTTGGGAAGTT  150

seq1  TGTTAGTACCTTTTTTCTTGGACCTATGTTTTCACAAAGTAGAGTACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTACCTTTTTTCTTGGACCTATGTTTTCACAAAGTAGAGTACACT  200

seq1  ACACTCTTTTAGGGTGGAAATTAATTGTTCAGGATACATGCTTTGAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTTTTAGGGTGGAAATTAATTGTTCAGGATACATGCTTTGAAAAA  250

seq1  GTGGACTAGAATTGTTTTGTGGTACTAAGAGAATAAAATAATTTTATAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACTAGAATTGTTTTGTGGTACTAAGAGAATAAAATAATTTTATAAG  300

seq1  TATTTAACTGTAGTTTCAAGTTTGAATCATCTTTTAATGATTCATTTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAACTGTAGTTTCAAGTTTGAATCATCTTTTAATGATTCATTTGTA  350

seq1  CAGAGATATAATTTAGAAGAACAGTTATCAAGATCAGAATGTTGAGTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATATAATTTAGAAGAACAGTTATCAAGATCAGAATGTTGAGTGAT  400

seq1  TCAAGTTTTAAAGTCAAGGACTTGATGTAGAAATGGTTTCTTTGTTGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTTTAAAGTCAAGGACTTGATGTAGAAATGGTTTCTTTGTTGGCA  450

seq1  CTGTGGAACACAGTCATGGTAAACCTAGAGTACTGGGTGGTAGTGGTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAACACAGTCATGGTAAACCTAGAGTACTGGGTGGTAGTGGTGGT  500

seq1  GGTGGTGACGATGATCATAATGATGATTTGTTTTGTACCAGCATAAAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGACGATGATCATAATGATGATTTGTTTTGTACCAGCATAAAGCT  550

seq1  TGCCTTTCCTTCTAACTCATTTCTCCCTTCTGTCCGTATGTTGTTCTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTCCTTCTAACTCATTTCTCCCTTCTGTCCGTATGTTGTTCTGTC  600

seq1  TCAGAATTC  609
      |||||||||
seq2  TCAGAATTC  609


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