BAC Information

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BAC

Clone NameB6Ng01-124K21
Chromosome6 (Build37)
Map Location 85,609,222 - 85,610,042
singlet/doubletsinglet
Overlap geneAlms1
Upstream geneExoc6b, LOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4
Downstream geneLOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124K21.bB6Ng01-124K21.g
ACCDH927524DH927525
length921500
definitionDH927524|Mus musculus domesticus DNA, BAC clone: B6Ng01-124K21, 5' end.DH927525|Mus musculus domesticus DNA, BAC clone: B6Ng01-124K21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcaagatcaattgttatatctcccttttcatttctgattttct
taattaggatgttgtcactgtgccctctagtgagtctagctaagggttta
tctatctagtttctttttggaggcatcagagctatgagtttccctctaag
aaatgtgtcccataggtttgggtattttgtggcttcattttcattaaact
ctaaaaagtctttaatttctttctttattccttccttgatcaaggtatca
ttgagaagagtgttgttcagtttccacttaaatgttggctttccattatt
tatgttgttattgaagatcagccctagtccatggtgatctgatagcatgc
atgggacaatttcaacatttttgtatatgttgaggcttgttttgtgagca
attatatggtcaattttggggaaggtacaatggggtgctgagaagaaggt
atatccttttgttttaggataaaatgttctgtagatatctgttaagtcca
tttgtttcatcacttctgttagtttcactgtgtccctgtttagtttctgt
ttccatgatctgtccattggtgaaagtggtgtgttgtagtctcccactat
tattgtgtgaggtgcaatgtgtgctttgaggtttactaaagtttctttaa
tgaatgtggctgcccttgtgtttggagcatagatattcaggattgagagt
tcctctttgaggattttaatttgatgagtatgaagtgcctctccttgtct
tttttgattattttgggtttgaagtcgattttgttagatattagaatggc
tactccagcttgtttcttcataacatttgcttggaaaatgttttccagcc
tttcattcttagtagtgtctatctttttttctgagatgagtttctgtaag
cagcaaaatgttgggtctggt
ctcgagctgccagagggattggttctactggaaatgattctgcttactta
ataatgcctttagattccaggccatccttggagttagttatagaagggaa
acaatttgagggaattttagatacaggagcacacaaaagtattatttctt
ctcactggtggccaaaatcctggcccgtaactcagtcatcacactcttta
caagggctaggctatcagtcctgctccactattagctctcgttctttgag
ctggcaaatggatgtcatgcatatttcctcctttgggaaaaatcaatatt
tccatgtttgctaatctgtctaggcagatttctttgtatcttgcaggaaa
ttggtctgaaagattcgatgagacccttgaggccctgagagcagctgttc
tcaggatcaactcgacacgagtggacctgtcattaacagagggtctctcc
tcctggatttcatctgctttttcttattttaggtaatgggtgggggtggt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_85609222_85610042
seq2: B6Ng01-124K21.b_49_675 (reverse)

seq1  CTCAAAGCACACATTGCACCTCACACAATAATAGTAGGAGACTTCAACAC  50
      ||||||||||||||||||||||||||||||||||| ||||||| ||||||
seq2  CTCAAAGCACACATTGCACCTCACACAATAATAGTGGGAGACTACAACAC  50

seq1  ACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACA  100

seq1  CAGTGAAACTAACAGAAGTGATGAAACAAATGGACTTAACAGATATCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAACTAACAGAAGTGATGAAACAAATGGACTTAACAGATATCTAC  150

seq1  AGAACATTTTATCCTAAAAC-AAAGGATATACCTTCTTCTCAGCACCTCA  199
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  AGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCCCA  200

seq1  TGGTACCTTCTCTAAAATTGACCACATAATTGGTCACAAAACAAGCCTCA  249
      | |||||||| | ||||||||||| ||||||| |||||||||||||||||
seq2  TTGTACCTTCCCCAAAATTGACCATATAATTGCTCACAAAACAAGCCTCA  250

seq1  ACATATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGATCACCAT  299
      |||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  ACATATACAAAAATGTTGAAATTGTCCCATGCATGCTATCAGATCACCAT  300

seq1  GGACTAAGGCTGATCTTCAATAACAAAATAAATAATAGAAAGCCAACATT  349
      |||||| ||||||||||||||||||| ||||||||| |||||||||||||
seq2  GGACTAGGGCTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATT  350

seq1  CATGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAG  399
       | ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAAGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGATCAAGGAAG  400

seq1  GAATAAAGAAAGAAATTAAGGACTTTTTGGAGTTTAATGAAAATGAAGCC  449
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  GAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCC  450

seq1  ACAACATACCCAAACTTATGGGACACAATGAAAGCATTCCTAAGAGGAAA  499
      |||| |||||||||| |||||||||         |||| || ||||| ||
seq2  ACAAAATACCCAAACCTATGGGACA---------CATTTCTTAGAGGGAA  491

seq1  ACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACACATTA  549
      |||||||||||||| ||||||||||||||||||                 
seq2  ACTCATAGCTCTGA-TGCCTCCAAAAAGAAACT-----------------  523

seq1  GCAGCTTGACAACACACCTAAAAGCTCTAGATCAAAAGGAAGCAAATTCA  599
                                                        
seq2  --------------------------------------------------  523

seq1  CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGACGAAATCAA  649
                                                        
seq2  --------------------------------------------------  523

seq1  CCAAGTGGAAACAAGAACTATTCAAAGAATCAACCAATCGAGGAGCTGGT  699
                                                        
seq2  --------------------------------------------------  523

seq1  TCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGA  749
                        ||||||||||||||||||||||||||||||||
seq2  ------------------AGATAGATAAACCCTTAGCTAGACTCACTAGA  555

seq1  GGGCACAGGGAAAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGA  799
      |||||||| || | |||||||||||| |||||||||||||||||||||||
seq2  GGGCACAGTGACAACATCCTAATTAAGAAAATCAGAAATGAAAAGGGAGA  605

seq1  TATAACAACAGATCCTGAAGAA  821
      ||||||||  |||| |||||||
seq2  TATAACAATTGATCTTGAAGAA  627