BAC Information

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BAC

Clone NameB6Ng01-125E16
Chromosome6 (Build37)
Map Location 71,946,548 - 72,036,574
singlet/doubletdoublet
Overlap geneLOC668057
Upstream geneLOC619547, Thnsl2, Fabp1, Smyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4
Downstream geneSt3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3, Kcmf1, Tmsb10, Dnahc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125E16.bB6Ng01-125E16.g
ACCDH927969DH927970
length529323
definitionDH927969|Mus musculus domesticus DNA, BAC clone: B6Ng01-125E16, 5' end.DH927970|Mus musculus domesticus DNA, BAC clone: B6Ng01-125E16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,946,548 - 71,947,082)(72,036,261 - 72,036,574)
sequence
caagtttcatactttcgcagaaactatctgcagctggcaaaagcacactc
ctgctagagcatgaggcaaatcataatcagctgctgtgaacaatttgaag
cagccccgtatcccatgcctggaattaaaaaggagaacacatttttatac
tatttctgtgtttgtaaagaaaccataattctcactgtaattctccctct
cctagcagctaccgatggccagtagctcctcatcaagggcagggacctca
ggagggcctcttggggactacttttagagagtactcagaaaagtgtctct
tgattcaacctgagacctgtcttctgtctgtagaagagtattctgtatca
gcatagagtgcactaatcccagaagctaggactttaaaaatatgtgaggt
gcctccctgagccctttgtttatatatacaaaaccctttttctttgcatt
tgtctatcatttatccatccatctatcatctatctatctatgtatgtgtg
tgtgtgtgtttatgtatgtgtgtgtgtta
tcagtgaacacatcatgtggccactcaagtcaagtcaagaccaaaggaca
caggtgatctgaagacagcctgtggctccttctggtcaccaacctcaccc
tcctcttatgttgatattctctcttctgccaccccatagggtagtttatc
ccactgtctccttactctgtataaaggaagtcctatagcagacaatttta
tgtctgtgttctcttggaagagataattgggtttgtggaagaagcatata
tatatatatgtatatatgtatatatatatatatatatatatatatatata
tatatatatatatatatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_71946548_71947082
seq2: B6Ng01-125E16.b_47_581

seq1  GAATTCCAAGTTTCATACTTTCGCAGAAACTATCTGCAGCTGGCAAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTTTCATACTTTCGCAGAAACTATCTGCAGCTGGCAAAAGC  50

seq1  ACACTCCTGCTAGAGCATGAGGCAAATCATAATCAGCTGCTGTGAACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCTGCTAGAGCATGAGGCAAATCATAATCAGCTGCTGTGAACAAT  100

seq1  TTGAAGCAGCCCCGTATCCCATGCCTGGAATTAAAAAGGAGAACACATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCAGCCCCGTATCCCATGCCTGGAATTAAAAAGGAGAACACATTT  150

seq1  TTATACTATTTCTGTGTTTGTAAAGAAACCATAATTCTCACTGTAATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTATTTCTGTGTTTGTAAAGAAACCATAATTCTCACTGTAATTCT  200

seq1  CCCTCTCCTAGCAGCTACCGATGGCCAGTAGCTCCTCATCAAGGGCAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCCTAGCAGCTACCGATGGCCAGTAGCTCCTCATCAAGGGCAGGG  250

seq1  ACCTCAGGAGGGCCTCTTGGGGACTACTTTTAGAGAGTACTCAGAAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGGAGGGCCTCTTGGGGACTACTTTTAGAGAGTACTCAGAAAAGT  300

seq1  GTCTCTTGATTCAACCTGAGACCTGTCTTCTGTCTGTAGAAGAGTATTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTGATTCAACCTGAGACCTGTCTTCTGTCTGTAGAAGAGTATTCT  350

seq1  GTATCAGCATAGAGTGCACTAATCCCAGAAGCTAGGACTTTAAAAATATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGCATAGAGTGCACTAATCCCAGAAGCTAGGACTTTAAAAATATG  400

seq1  TGAGGTGCCTCCCTGAGCCCTTTGTTTATATATACAAAACCCTTTTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGCCTCCCTGAGCCCTTTGTTTATATATACAAAACCCTTTTTCTT  450

seq1  TGCATTTGTCTATCATTTATCCATCCATCTATCATCTATCTATCTATGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTGTCTATCATTTATCCATCCATCTATCATCTATCTATCTATGTA  500

seq1  TGTGTGTGTGTGTGTTTATGTATGTGTGTGTGTTA  535
      |||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTTTATGTATGTGTGTGTGTTA  535

seq1: chr6_72036261_72036574
seq2: B6Ng01-125E16.g_68_382 (reverse)

seq1  ATAT-TATATATATATATATATATATATATATATATATATACATATATAC  49
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATATACATATATAC  50

seq1  ATATATATATATATGCTTCTTCCACAAACCCAATTATCTCTTCCAAGAGA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATGCTTCTTCCACAAACCCAATTATCTCTTCCAAGAGA  100

seq1  ACACAGACATAAAATTGTCTGCTATAGGACTTCCTTTATACAGAGTAAGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACATAAAATTGTCTGCTATAGGACTTCCTTTATACAGAGTAAGG  150

seq1  AGACAGTGGGATAAACTACCCTATGGGGTGGCAGAAGAGAGAATATCAAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTGGGATAAACTACCCTATGGGGTGGCAGAAGAGAGAATATCAAC  200

seq1  ATAAGAGGAGGGTGAGGTTGGTGACCAGAAGGAGCCACAGGCTGTCTTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGGAGGGTGAGGTTGGTGACCAGAAGGAGCCACAGGCTGTCTTCA  250

seq1  GATCACCTGTGTCCTTTGGTCTTGACTTGACTTGAGTGGCCACATGATGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACCTGTGTCCTTTGGTCTTGACTTGACTTGAGTGGCCACATGATGT  300

seq1  GTTCACTGAGAATTC  314
      |||||||||||||||
seq2  GTTCACTGAGAATTC  315