BAC Information

Click to search

BAC

Clone NameB6Ng01-125K06
Chromosome6 (Build37)
Map Location 19,427,497 - 19,428,238
singlet/doubletsinglet
Overlap genenone
Upstream geneCttnbp2, EG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125K06.bB6Ng01-125K06.g
ACCDH928219DH928220
length1,2631,097
definitionDH928219|Mus musculus domesticus DNA, BAC clone: B6Ng01-125K06, 5' end.DH928220|Mus musculus domesticus DNA, BAC clone: B6Ng01-125K06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaaatccaaaatccccaaattcaaattcttctaaacaaaactag
ggtcaggcctatcatagaaatatcccaatccttggtaccatcttctgcct
tagggttttactggtgtgaaaagacaccatgattaaagcaagtcttataa
ggacaacatttgattggggatggctaacaggtagagtttcagtatgttgt
catcaaggtgggagtatggcagtgtccaggtaaacatgattcaggaggag
ctgagattctacgtcttcatctgaaggccaattgaagactgtttttgttc
tttttaggaagagtgtctcattggccacccctaaggtgacatacttcccc
ccaaaaggccatacttactccaacaagccacctcctaatagtgacaatcc
ctgggacaagtatgtttaaatgaacatagggaactttgaagttggacaga
atgcattttgcactgtaatatagctataaccttattggggtcagaaagtg
aaatgtagtaatttgaataaaaatcacactcctaggaccctagggagtgg
cattattagttaatatggtcatgttggagaaactatgtcactagggggtg
ggaactgcattttcaaatgttcatgacagattgttttctatttcttcctg
cagccagaggatctaagctacttcactactacaatgtctgtctaaatgac
accatgcttctcaccataaaaataaggaactaaacctctgaactataagt
cattcccaagtaaatgcttttctttctaaaacttgctgtggtaatggttt
ctattaacaacaatgaaacactaaataagagatggtttcatactctagat
gatgtccattagatagtgttttcagttaatatagtatcagccctggaagt
atcatcattttaattgttttttcagagaaaacatgactcaaattaaaact
aaaatttcagaactttttagtgttttataaatatgaagcttgagataaat
gttatttgtaaactacaccaccttattctgtttcatttgctgtttatttc
ctcaaatattcacctgaattgcaccttttgaatgttttaatatgagtttg
tctgcttcaggaaattcattgactttcttataattttggctgtcataggt
cagaaagtactggatccatatcaccatgatttttaagccattagctaaga
atactgcatgctacggtcaatctatactaagaatagcctccgagaaaact
agtcgatgtacga

gaattcaatgaaaatgcagggaaacacccaaacttatgggacataaggaa
agcagcaataagagaaaagttcctagccctaaaagccttcataaaaatct
gcagcattttcatactagcaacttaacagcacaccagaaagctttagaac
aaaaagaagcaaacacacccaagaagagtagatggcaggaaatagtcaaa
ctcagtgctgaaataatcaattagagacaaagaaaagaatacaaacaatc
aacaaaaccaacagctgttcctttgagaaaaattaataaagcagaggaat
gctcagccaaactaactgataaggcagagagacagcaaccaaattaatat
aatcagaaacaaaaaggaagatataacaacagaaaatgaagaaataataa
taaaaaacattaggtattacttcaaaaacatgtaacacaaaactggaaca
tgccaaattcatcttacaaaatcagttactttgataagtaaaaccagcaa
agatgccccaaagaaaatttcagaacaatttttataaacattaatccaaa
aatcttcaataaaattctcacaaaccaaatcaaagcacaaatcaaaaacc
tccttcaccatcatcaagtaggcttcatctcagtgaatcacaggtggctc
aatatacaaaaatctttcaacataatccaccatgtaaacaatctgaaaga
aaataaatcacatgaccatttcactagatgctgagaaagcctttgacaga
atccatcacctctttatgttacatttcttggacagattagggatgaaaac
acacaactaaacttaataaaagcaaaatatagcaagccagtttccaaaat
tggattctctgggaaattaggaggagggtagttttgattgtagaaacccg
catagcctttatggttggtatttaccagttttaaaacttatagagtctct
atttgtcatatatatttttttaaattataaagataggtgtaggttaggga
ctggtggggtttatatgacccttatctagctgtatgtttttatagctgag
gtagcttctgtactaaaagaaaaaagaaaaaaaccaaacaaacaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_19427497_19428238
seq2: B6Ng01-125K06.g_425_1161

seq1  AAAAAGGAAGATATAACAACAGAAAATGAAGAAATAATAATAAAAAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAAGATATAACAACAGAAAATGAAGAAATAATAATAAAAAACAT  50

seq1  TAGGTATTACTTCAAAAACATGTAACACAAAACTGGAACATGCCAAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATTACTTCAAAAACATGTAACACAAAACTGGAACATGCCAAATTC  100

seq1  ATCTTACAAAATCAGTTACTTTGATAAGTAAAACCAGCAAAGATGCCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACAAAATCAGTTACTTTGATAAGTAAAACCAGCAAAGATGCCCCA  150

seq1  AAGAAAATTTCAGAACAATTTTTATAAACATTAATCCAAAAATCTTCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATTTCAGAACAATTTTTATAAACATTAATCCAAAAATCTTCAAT  200

seq1  AAAATTCTCACAAACCAAATCAAAGCACAAATCAAAAACCTCCTTCACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTCACAAACCAAATCAAAGCACAAATCAAAAACCTCCTTCACCA  250

seq1  TCATCAAGTAGGCTTCATCTCAGTGAATCACAGGTGGCTCAATATACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAAGTAGGCTTCATCTCAGTGAATCACAGGTGGCTCAATATACAAA  300

seq1  AATCTTTCAACATAATCCACCATGTAAACAATCTGAAAGAAAATAAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTCAACATAATCCACCATGTAAACAATCTGAAAGAAAATAAATCA  350

seq1  CATGACCATTTCACTAGATGCTGAGAAAGCCTTTGACAGAATCCATCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCATTTCACTAGATGCTGAGAAAGCCTTTGACAGAATCCATCACC  400

seq1  TCTTTATGTTACATTTCTTGGACAGATTAGGGATGAAAACACACAACTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATGTTACATTTCTTGGACAGATTAGGGATGAAAACACACAACTAA  450

seq1  ACTTAATAAAAGCAAAATATAGCAAGCCAGTTTCCAAAATT-GAATCTCT  499
      ||||||||||||||||||||||||||||||||||||||||| || |||||
seq2  ACTTAATAAAAGCAAAATATAGCAAGCCAGTTTCCAAAATTGGATTCTCT  500

seq1  GGGAAATTAGGA-GAGGGTAGTTTTGATTGTAGAAACCCGCATAGCCTTT  548
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGGAAATTAGGAGGAGGGTAGTTTTGATTGTAGAAACCCGCATAGCCTTT  550

seq1  ATGGTT-GTATTTACCAGTTTTAAAACTTATAAGAGTCTCTATTTGTCAT  597
      |||||| |||||||||||||||||||||||| ||||||||||||||||||
seq2  ATGGTTGGTATTTACCAGTTTTAAAACTTAT-AGAGTCTCTATTTGTCAT  599

seq1  ATATATTTTTTTAAATTATAAAGATAGGTGTAGTTTAGGGACTGGTGGGT  647
      ||||||||||||||||||||||||||||||||| ||||||||||||||| 
seq2  ATATATTTTTTTAAATTATAAAGATAGGTGTAGGTTAGGGACTGGTGGGG  649

seq1  TTAATATGACCCTTATCTAGCTGTATGTTTTTATAAGCTGA-GTAGCCTT  696
      || ||||||||||||||||||||||||||||||| |||||| |||| |||
seq2  TTTATATGACCCTTATCTAGCTGTATGTTTTTAT-AGCTGAGGTAG-CTT  697

seq1  CTGTAACTTAAAAAAAGAAAAAAAGAAAAAAAAAACAAAAACAAAA  742
      |||| |||    ||||| ||||||||||||||  | | ||||||||
seq2  CTGT-ACT----AAAAG-AAAAAAGAAAAAAACCAAACAAACAAAA  737


| Home | SequenceCutter | Blast | Download |