BAC Information

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BAC

Clone NameB6Ng01-125M11
Chromosome6 (Build37)12 (Build37)
Map Location 18,836,102 - 18,836,50113,835,075 - 13,835,731
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125M11.bB6Ng01-125M11.g
ACCDH928319DH928320
length915773
definitionDH928319|Mus musculus domesticus DNA, BAC clone: B6Ng01-125M11, 5' end.DH928320|Mus musculus domesticus DNA, BAC clone: B6Ng01-125M11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,836,102 - 18,836,501)(13,835,075 - 13,835,731)
sequence
gaattcacactgttgtcaaccaaagttgaccctatgggaaaacatctgaa
agctgtgtcaacagtgaatgaaatctgaccgtactgatttatcatttcaa
attgacatagtcactctgttgtccctattcatttgatcttagaaatctca
gtggctttccactccctcattcagttctatttttaaaaatattgaatgtg
ctgtttgacacttctatacatgtgcattctaattccccattaccctgacc
ctctctagtctcctcccatacctgttatcactcctctttcctttaagtcc
tttcccacattcatgtctttgttgattggggggggtgactttattttcta
ttttattgaaaaactattctcctttcttagaaaagagtctgacaacagtt
tcccctccctctactctttccccacatctcccttccccctcattgtacta
tcatgctctgtgttctcttgtgattgggttacctcacttaggatgatatc
ctccagatccatccatttgtctaagaatttcataaattcattgtttttaa
tagctgcatactattccattgtgtaaatgtaccacatttctgtatccact
cctctgttgagggacatatgggttctttccaacttctagctattataaat
aaggctgctatgaacatagtggagcatttgtccttatttcaagttggaac
atcttctgggtatatgcccaggagtggtattgctggatcctctgatagta
ctatgtccaattttctgtggaactgccaaactgatttccagattagttgt
accagcttgcaatctcaccagtatggaggagtgttcctctttctccacat
cctcactaacatctgctgtcacctggagtttctgatctagccaaaatggt
tacctcataaattgc
gaattcttgacaaagtaaataacggggacgatccattaattaatttaaag
cagaaaatacaaaaagatgaagaaaggactgattcttagatgaagaacct
ttagaagaaacccataatcttgtttataacaaaggtgcctctgtaaccct
tatgacacaatagtgataataataataattaataataataaataacagaa
taaaaaagcagacttacatagatgtttctacaaagaagatgtatcagtat
ccaaaagcacatggaaagtgaacaccaacagtccttagtgaggtttcatg
gcttaagtgaggttatttcttatcattaatttttcatcaacatcatcacc
accatcaccataaaaaaaatgtaccgataaggctatattgaagttggatt
gttggcccattgccagcaggaattaaaacaatatagctactgtggagcat
gtcatgtcatacctcttaaagtaaaaaagaattaacataccaactagtaa
tattatcttcagacttaaatgaaaaagaattgaaagcaaggatccagtag
ataacatgtgccacagcattattcacagtagcccctaatccaatatccat
caggaggagtcgagaagcaaaatgtgatagaatcctacaatggagtattc
tccagccttagcaagaaaagccattttgacacttgcacaacatggctcta
ctttgaagacatcctgctaagtttctctctctctctctctctctctctct
ctctctcacacacacacactcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18836102_18836501
seq2: B6Ng01-125M11.b_527_924 (reverse)

seq1  CAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTC  50
      |||||||||||||||| | | | |||||||||||||||||||||||||||
seq2  CAGGTGACAGCAGATGTTAGTGAGGATGTGGAGAAAGAGGAACACTCCTC  50

seq1  CATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTG  100
      || |  ||||| ||||||| ||| ||||||| | |||||||||| || ||
seq2  CA-TACTGGTGAGATTGCAAGCTGGTACAACTAATCTGGAAATCAGTTTG  99

seq1  GCGGTTGCTCAGAAAATTGGACATAGTACTACTGGAGGATCCAGCATTAC  150
      || ||| | ||||||||||||||||||||||   |||||||||||| |||
seq2  GCAGTTCCACAGAAAATTGGACATAGTACTATCAGAGGATCCAGCAATAC  149

seq1  CTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACA  200
      | |||||||||||||| ||||||||||  |||||| | || ||||||| |
seq2  CACTCCTGGGCATATACCCAGAAGATGTTCCAACTTGAAATAAGGACAAA  199

seq1  TGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAA  250
      |||||||||||||||||||||||||||||||||||||| ||||| |||||
seq2  TGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCTAGAAGTTGGAA  249

seq1  AGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACA  300
      |||||||| ||| |||||||||||||| ||||||||| ||||||||||||
seq2  AGAACCCATATGTCCCTCAACAGAGGAGTGGATACAG-AAATGTGGTACA  298

seq1  TTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAA  350
      ||||||||||||| || ||  ||||||||||||| |||||||||||||||
seq2  TTTACACAATGGAATAGTATGCAGCTATTAAAAACAATGAATTTATGAAA  348

seq1  TTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAAC  400
      ||| ||| |||||||||||| |||||||  |||||||| |||||||||||
seq2  TTCTTAGACAAATGGATGGATCTGGAGGATATCATCCTAAGTGAGGTAAC  398

seq1: chr12_13835075_13835731
seq2: B6Ng01-125M11.g_68_724

seq1  GAATTCTTGACAAAGTAAATAACGGGGACGATCCATTAATTAATTTAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGACAAAGTAAATAACGGGGACGATCCATTAATTAATTTAAAG  50

seq1  CAGAAAATACAAAAAGATGAAGAAAGGACTGATTCTTAGATGAAGAACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATACAAAAAGATGAAGAAAGGACTGATTCTTAGATGAAGAACCT  100

seq1  TTAGAAGAAACCCATAATCTTGTTTATAACAAAGGTGCCTCTGTAACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGAAACCCATAATCTTGTTTATAACAAAGGTGCCTCTGTAACCCT  150

seq1  TATGACACAATAGTGATAATAATAATAATTAATAATAATAAATAACAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACACAATAGTGATAATAATAATAATTAATAATAATAAATAACAGAA  200

seq1  TAAAAAAGCAGACTTACATAGATGTTTCTACAAAGAAGATGTATCAGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAGCAGACTTACATAGATGTTTCTACAAAGAAGATGTATCAGTAT  250

seq1  CCAAAAGCACATGGAAAGTGAACACCAACAGTCCTTAGTGAGGTTTCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGCACATGGAAAGTGAACACCAACAGTCCTTAGTGAGGTTTCATG  300

seq1  GCTTAAGTGAGGTTATTTCTTATCATTAATTTTTCATCAACATCATCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAGTGAGGTTATTTCTTATCATTAATTTTTCATCAACATCATCACC  350

seq1  ACCATCACCATAAAAAAAATGTACCGATAAGGCTATATTGAAGTTGGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCACCATAAAAAAAATGTACCGATAAGGCTATATTGAAGTTGGATT  400

seq1  GTTGGCCCATTGCCAGCAGGAATTAAAACAATATAGCTACTGTGGAGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCCCATTGCCAGCAGGAATTAAAACAATATAGCTACTGTGGAGCAT  450

seq1  GTCATGTCATACCTCTTAAAGTAAAAAAGAATTAACATACCAACTAGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTCATACCTCTTAAAGTAAAAAAGAATTAACATACCAACTAGTAA  500

seq1  TATTATCTTCAGACTTAAATGAAAAAGAATTGAAAGCAAGGATCCAGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCTTCAGACTTAAATGAAAAAGAATTGAAAGCAAGGATCCAGTAG  550

seq1  ATAACATGTGCCACAGCATTATTCACAGTAGCCCCTAATCCAATATCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATGTGCCACAGCATTATTCACAGTAGCCCCTAATCCAATATCCAT  600

seq1  CAGGAGGAGTCGAGAAGCAAAATGTGATAGAATCCTACAATGGAGTATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGAGTCGAGAAGCAAAATGTGATAGAATCCTACAATGGAGTATTC  650

seq1  TCCAGCC  657
      |||||||
seq2  TCCAGCC  657